TCONS_00070285 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070285
Unique Name	TCONS_00070285
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1129

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_52:16307..23454+
coding sequence from alignment at scaffold_52:16307..23454+

transcript sequence

>TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=transcript|length=1129bp
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAAT
TTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATA
CCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCT
CGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACC
GTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAA
GCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGC
TCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGT
TATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGG
AAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAG
CTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCC
ATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCAT
GCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGT
CAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACG
ACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAG
AAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGG
GGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAA
TAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTA
AAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAA
GTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAA
ACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGAC
CTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGA
GAAGAGAGAAGGAAGCTCTGGGAAGGAGG

Run BLAST on NCBI

protein sequence of TCONS_00070285-protein

>TCONS_00070285-protein ID=TCONS_00070285-protein|Name=TCONS_00070285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
DQIVTRDRKLTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASI
PVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAK
AMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDG
KPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNH
ATAWGEGGGKKGTEIDVKKVVAELIRTRKDKSYDDATGGQDENRATAKSE
KDNNNHRQSKKLKTDDGGSVEVKTEITSNSSNSIDADANQKSKVQNGCSL
KGVRETDNIKTNGTSDKLSHLNIQKANSTECETNSTTESETSAMENKVKD
LSTLKCEENSNKESVAEKREGSSGKE

Run BLAST on NCBI

transcript from alignment at scaffold_52:16307..23454+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=transcript|length=7148bp|location=Sequence derived from alignment at scaffold_52:16307..23454+ (Clytia hemisphaerica)
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGGTAAAAGCATGAGACTTTATGAGTTATTCCCACTG
ACCTTCATAAACCCTTggccaagctatatccgccatctttaatcAGAGCT
ATCTTTATGAAAAAGGGTTTCTGCAATGAATCCATTGCAGTGTTGAAGCC
TTGCCTAATGTTGAACTTAACCCGAAAATCAATACTATGTGtgttgaatt
tttcaaatttgcaacatttttgcaacttttcCAACGATTCGAACGTTCTA
CAGCCAAACTCACTAAGTTAACTTTATATTTacgaatttgttttttttaa
tatggtAAGTGCAACCAACCATAGGAAATCGGGAAATAGGCAGGAAAGTC
AGTAATCGGCAGATCGGGATCCCCCCGACAacaagaaagtaaacaaaaca
tttttgtcaacaaaaccaaaaaagAACTGAAAACCTTTTGTTTAAGGTGA
CACTACTGATTGGCTGGGTTTGTCTTGCTACTTTGACTACATTGAATTGA
TTCAATTTGCTTTAAAATTATCAACAACattaaaaagtgcaattaattTC
AATAGGCAATTAAGATTAAAcattattctcaacttcagttgagttagaat
ctgagaatgtgtgtctgtctgtgtgtctgtctgtgtgtgtgtatgtccca
aaactttggggcagcctggagacttcaaAAATTGTTCGATGTGGCTGAAA
TTTGGCACACTTGTTCCTTGGGTGAATATCTGGAGTTTTTCTTTTTCATT
TTTCAAAATTTCTGATTTTTGGGGCCTGGGGACGAGTTTTCGCCAAAACG
Aggctaaaactttggggcagcctggagacttcaaaaatggtcggatttgg
ctgaaattttgcacacttgttccttgggtgaatatctgggggtgtttttt
cccattttttaaaagttttgatttttggggactggggacgagtttttcgc
caaaacgaggctaaaactttggggcaggctggagacttcaaaaatagtcG
GATTTGcttaaattttgcacacttgttccttgggtgaatatctgggggtg
ctttttaaatttttcaaaaattttgatttttggggcctgggaaggagttt
ttttgccaaaacgaggctaaagctttggagcagtctacaggcctccaaaa
tgatcggatttggttgaaattcggcacacttgttcatcgggtgaatatct
gggggtctacacctgggcctatgaatgatttgaagccactgaagttgagc
ccagtgcgttgcgcacgttcgactattagaATAGAGAATTGACATTAAAG
CAATAAAAGGAACTTGTTCCAAACGTCTCTTCCAAAATCATTACACATTT
CTTATCTCTAGACATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCT
ACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATACCGG
TCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGA
AAAGACCACGGGCTAGAGCGGCTGCATAGTATGTATGTTTATCTGTGGGC
CATAGGTAGTTAGGACTGGTTGCGCTCTAGTAACGACTTCCGGTTGGTTA
GACgcaaagatcgaattagagaagattttaaattgaagattttcaacatt
tttcaaaactttagaCCAATAGTTAGTCgacattagcgcgcagtggccCT
GATTACCCATCATGCTTTGTGACTATGAAGTGACCTATTCGACTGACCGT
GTTGTGGTAAACAGTATGGAAATACTTAATTGTTGAATCCATCTTTTATG
CGAATCTTAATCTGTGTTGAGTCACGTCTCTACAATACGCATGTTGAAAG
GTATAGAGTTTTTTTAACGTAATTCCCGCCATTAtagaagcaaacgttcg
aatctgtagaggggatcccttacgcaaatcgaacgtttgcttccataatg
gcggaagttaCGTAATTTAACAAAACATGAGAAACCTCTATTTTTGTCTT
GATTATTCTTCGATCATCCGATCGTTTTTACTCTTTCCTTTTGTTTTAGC
GATCCATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAGT
CAGTATTATTTCGACTTAAGCTAAATTATTTAAATACCATACgctggtct
aatctcgacatccgtcATCTAATTAGGACACCCTTCTTTACAGTTGGGAA
TAAAAGGACGGTCGGAATAATACATCAGTCGGAGTTGCTGATAGAGAAAC
TATAATTTTGCTTAGAAAAAATctttgtctatcagtgattccgacctttc
tattattcctatctttaaagaagggtgtcgaaattagatgaaggatgtcg
aaattagacaaACTCACGGTAGTATCTTTGAaactatatttttgtttttg
cttagcgatcagggaggaaaaaatcttttgtctatcagtgattctgacct
tcctattattcctatctttaaagaagggtgtcgaaattagatgaaggatg
tcgaaattagacaaACTCACGGTAGTATCTTTGAaactatatttttgttt
ttgcttagcgatcagataggaaaaaatcttttgtgtatcagtgatttcga
ccttctcattattcctatctttaaagaagaaTATCGGAACTAgaagaggg
gtgtcgacattagaccaacttacagtagtATTTTTGAATCCTTCACAACA
GATGAATATCTGGTCAGAAGCAGAATAAGATACCCAACCTCGTCCACGTG
TAACCTAGGCTTTATTTACGATAaatgatggacgccagagattATCATTT
GGGTGTcaattgtctgtacacaaacccgatatctacggcttatttcaaaa
ttcattgccgtatagggtctgttgtcattgtcttcaaaccgaccgctgcg
atggagtgttggtaaGAGAGGGGAGACGAAGAGAGAaatgttgctattta
taaatcatacttcatcgcagaggtctccgtgggggaatttttttatcaaa
cagacaatgcgcacagagtgtactacgaagcgataaacgtgagatacact
ctggcaCAGAGTAGGTATAAgtaagtatcaagtatcaaaagCCGATAATA
CACGGGGTACGAGGTTTTTGGCCACCGTATCAGGTAAAATGGTCTGTTTC
TCAAATTTTTACCCCCTTTTCTTCGATAAGATAAGATTTCTTTCACCGAA
AGAAAAACACATTTAGTATCTATCTTGAaacaacccagctggcacacaac
gttttttcgacgtttatctaacgttcacaacgtccatataacgttagatg
aacgttgaaacaacgttgtgggcCAGCTGGGAAAGGGCAAAATGTTCCCT
TTCAGAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACG
GAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGGT
AAGTGGAAAGTTGTTTGTTTTTGTCAATACTGTTTGGCAACATATATACT
CTTTTCTCgagttcttttcttttttgtcgatAAAAGTTTGACCCATCATG
TAATAGATTTTTTCTTGACTTACCCTTAGTTTCTGAgaatctttttatag
aatttttcTCGAGTCTGAGAACTTTTGTGTCACGTGAACAGCAGCTCTCA
CTTGAAAAATAATGATCATAAGAAACTATGAAAAATGATCAAACATATTT
CTTTAGTCCGCCCATTATTAACGACTTTTAAAGAAAACCTCATTTTTTCA
TTACTAAGCAATGAATATAAAGTGCTCATTAAAAAACATTATCCAAATGA
AACCGGACAGGCTGTAAATTTCgcatctacaatcagtgccaaaatacttg
gcacaaaagggaaattccccacgaaATTCTATAaacacaaacaatttgga
agcgctctaaattaggttggaagggtagagttttaactctgagttttaac
gctagacttaagatcttaggatctgaggatccaaaagttcaaaaatggtc
cggtagggcttgaaatatagcctagaaaccaataaatccctcacagatcg
aaatattcgatgaagccaagttgaaggcccgaaattaacattctcgctcg
aacttcaattttcgaaaaatggtagaatagccaaaattgccaatatgtta
tggcactgattgttgGTCTGTTTGTGTCTGTGCTTGACCATCTAAACCTA
ATATGTGGTTAGACTGGagattcaaaaataattaactGGAATTTGgcgca
aagcttctgattgtctgtttttttttcatttttcttattttcacattttc
agGTCTGCGGACTTAATGATATTCTCTACAGTCAACACGGCATATTCTCT
TGTTACAAATTTTTCCAAACcattaagggaacttattttggtgagaacta
attttggcaaatttgatgagtttagacaaaattcgccaaaatgaattttt
gttgtttttttgtctcAATATCcttaaattcatcaaaattgcaaaaaagg
ACAGGTTTAGGTTattgtcattcgccaaaattagatctcgccaaatttac
caaattttGGACCATTCGTCAAAATAAGTTCTTgtcaatattaaaaattt
tcaaaatttagtaattcgccaaaattagttttcgCCGAAATAAGTTCGCT
AAATGTAATGAGCTGTTATTGAATAATTGCCAACTCCAGTGCAGGATTTC
TCGTTGTCAATCAATTTCGTTCACTTTGGTTTATATTTCTAGTGAAAGTA
TTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGT
CAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATC
GTTCAATGGTAAAAGCAGCTTGGTTCGTTGTAAGTTAATTCTCATGCTTC
ATTCTTTTtattagtgttttttttttcttttgcactgaggtttttaaatg
aaacaatagagtttCGAAatctaagccaatcagctgtgctttaaacattc
ttttgttttagatctctattgataaacttctttggttaaaaatttctatt
atgTTTAATCCTACTAATAGGTGAATTCCCGTTGGGGGTCatatatacag
tggagtctccataactcgaaaaccACACGTGTAAAACAaagttgttcgag
ttaaggataTTTCGAATTATGATTAACATTtaaaaggcattgttaactga
agggacgaggaAGCTTGTTCAAGTTAATAAGGAGATATTCAATTTAAAGA
GgttgagttaaagagactctattGTATTATTTCCAAAAGGATCTTTAGTC
CTTGTACACGAGCGTCACGGGTGATTTTTCNTTAAGGAGgttgagttaaa
gagactctattGTATTATTTCCAAAAGGATCTTTAGTCCTTGTACACGAG
CGTCACGGgtgatttttcacttttagaAAACTTGATAGGTTAGCCTCCGT
ACTTTTTCTTTCCGAAGAAGAagagttttgtttcatttttccataAATGt
acccgtttcatatcagacacatatttcatatcaggacagtgNTTCACATA
AGTGtacccgtttcatatcagacacatattttatatcaggacagtatcta
cctattgttatatcatgctgatataagcaaaaaatggttattatttcctc
tttctgaccaatcttgctccacatccgtttCAAACCaaagtgaaaaagct
tgtaaattaaaattgacgagtaagcaaacgatatcactcttatttaaaaa
caaaacctttaacatgtAAGATTAAATAATGTTTATTTCCAATCCTTTAT
TCGGTGTAGGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCCAT
TTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCATGC
CACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCA
AAAAGGTTTGAAATACGTGTTGGGTATAGCCTGGATATATTCTTTTTAAT
CAAGCCTGGAATCAGAAGCCTGATATAAGGCTGACggcaatagcgagttt
atgtattcgagataaatcgagggggacggtataaagcaaagctgacatgg
ggtcaaaatcgccgtccactttgctcgacgacggtaaaaacaccaagata
ccgtcgtctgtttaggtgagcaaaggcgatattgagccgtacatcaacta
tcgactttgttttgtatcgatttcacttaccgtcgccctcgatatcctcc
gatacataaactcggtaatatagCGTGTTTAGGTGGTGTGTTTAGCCTCT
ACGCTATATGTCTTTTTAATCAAGCCTTGAATCATAAGGCTTAGCTAAAG
CTGATGGCACTAAAGCGTCATCGGCGCTTagcttttttaagcttttttaa
ttCTAGTAAGTGAAACTAGCTTGGATTCCTAGGATATTCTAGAGATTATT
ATGATCAAATCTAGAATCACAGGCTCATAGGTACGGAAAAGTTTATACCG
ATAGAAATTGGGCTTAAAATTGGGAAACCGGTCTCTCGGAAGACGCTCTT
TTTCAGACCTGTACAAATAAAACGATGCTAGTATTTTGTTTGATGAGAAA
TAATAGAATTGCTGAACAAATTCCAGGTGGTGGCTGAACTCATCCGAACA
CGTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAG
AGCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAA
AGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACG
TCTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGT
TCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAA
CGAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAAC
TCAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAAT
GGAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTA
ATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGG

Coding sequence (CDS) from alignment at scaffold_52:16307..23454+

>TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=CDS|length=7896bp|location=Sequence derived from alignment at scaffold_52:16307..23454+ (Clytia hemisphaerica)
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAAT
TTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATA
CCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCT
CGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACC
GTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAA
GCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGC
TCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGT
TATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGG
AAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAG
CTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCC
ATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCAT
GCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGT
CAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACG
ACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAG
AAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGG
GGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAA
TAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTA
AAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAA
GTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAA
ACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGAC
CTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGA
GAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTGTGACAAGAGATC
GCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACCGACATGAA
CCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAACGACCAAGATAT
GATTGTCATCAACAAACCAGCCTCCATACCGGTCCATCCCTGTGGCCGGT
ACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGACCACGGGCTAGAG
CGGCTGCATACGATCCATCGAATCGACCGTTTGACATCTGGTATACTTAT
GTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACG
GACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCT
AGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAAT
CGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTC
ACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGT
ACAGGACGTATGCATCAGATACGAGTCCATTTGCAATGGCTTGGTCACCC
CATTCTAAACGATCCGATTTACAATCATGCCACAGCTTGGGGTGAAGGTG
GTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTGGTGGCTGAACTC
ATCCGAACACGTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGA
CGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTC
AGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACG
GAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAA
AAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACA
ATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAG
AAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAAC
TTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAG
AAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGG
AAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACAT
CCTCAAGACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTT
TCGAATTTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCC
TCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTT
CATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAA
TCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAA
GCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATA
CTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAG
AACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTA
GACGGGAAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAA
AAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATAC
GAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTAC
AATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGAT
TGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGT
CGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAA
TCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGA
CGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGA
ATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGT
TCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTC
AGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTG
AAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTT
AAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGT
GGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTGTGACAA
GAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACCGA
CATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAACGACCA
AGATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCCATCCCTGTG
GCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGACCACGGG
CTAGAGCGGCTGCATACGATCCATCGAATCGACCGTTTGACATCTGGTAT
ACTTATGTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAG
TTCACGGACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGAT
TTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCATGTCTCA
TAAAATCGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCTCTACCA
CTTTTCACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTA
CCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCAATGGCTTGG
TCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAGCTTGGGGTG
AAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTGGTGGCT
GAACTCATCCGAACACGTAAGGACAAGTCGTACGACGACGCCACTGGTGG
TCAGGACGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATAATAATC
ATCGTCAGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTA
AAAACGGAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGATGCTAA
TCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAA
CAGACAATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCATTTAAAT
ATTCAGAAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGACAGAGAG
CGAAACTTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTCTAAAAT
GTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGC
TCTGGGAAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAA
AGACATCCTCAAGACAATTGTTCACCGACATGAACCACCTGTTGTGCACG
AACCTTTCGAATTTCTACAGAACGACCAAGATATGATTGTCATCAACAAA
CCAGCCTCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGT
GGTCTTCATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCC
ATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAAACACCA
GAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAA
AGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCG
TTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTT
CATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATCGTTCAA
TGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATC
AGATACGAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCG
ATTTACAATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGAC
AGAGATTGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGG
ACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACG
GCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAA
AACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATT
CTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAAT
GGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGG
TACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTG
AGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAAC
AAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGA
GAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTG
TGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTT
CACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAA
CGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCCATC
CCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGAC
CACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACCGTTTGACATC
TGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGA
CAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAA
GGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCAT
GTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCT
CTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGT
TGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCAATG
GCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAGCTT
GGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTG
GTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACGACGACGCCAC
TGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATA
ATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTC
GAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGA
TGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGA
GAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCAT
TTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGAC
AGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTC
TAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAA
GGAAGCTCTGGGAAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGAC
AAGTAAAGACATCCTCAAGACAATTGTTCACCGACATGAACCACCTGTTG
TGCACGAACCTTTCGAATTTCTACAGAACGACCAAGATATGATTGTCATC
AACAAACCAGCCTCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAA
TACCGTGGTCTTCATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATA
CGATCCATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAA
ACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGT
GGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTA
TTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGT
CAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATC
GTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTA
TGCATCAGATACGAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAAC
GATCCGATTTACAATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAA
AGGGACAGAGATTGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACAC
GTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGA
GCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAA
GCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGT
CTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTT
CAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAAC
GAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACT
CAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATG
GAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAA
TAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043769	XLOC_043769	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070285-protein	TCONS_00070285-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:16307..23454 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.84658	7.28345	1.40946	2.75788	9.93262	8.75308	11.2031	16.5701	6.29398	8.29184	9.45893	8.26979	12.2079	8.59782	14.8008	14.0335	12.5059	16.318	7.27807	5.95929	6.01782	6.81981	11.4184	10.381	13.3654	10.7353	1.70691	3.64333	7.59917	6.33465

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006145	PsdUridine_synth_RsuA/RluD
IPR006225	PsdUridine_synth_RluC/D
IPR006224	PsdUridine_synth_RluC/D_CS
IPR020103	PsdUridine_synth_cat_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0009451	RNA modification
GO:0001522	pseudouridine synthesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0009982	pseudouridine synthase activity
GO:0003723	RNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding

Blast

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BLAST of TCONS_00070285 vs. Swiss-Prot (Human)
Match: RUSD2 (RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.878e-85
Identity = 123/217 (56.68%), Postives = 161/217 (74.19%), Query Frame = 1

Query:   28 LTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASIPVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAKAMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDGKPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNHATAWGEGGGKKGTEIDVKKVVAELIR 678
            L   D L+  VHRHEPPV  EP   L  ++D++V++KP+SIPVHPCGR+RHNTV+FILGK+H L+ LH +HR+DRLTSG+LMFAKT   ++ +   V  R +EK Y  RVEG+FP+E +  +EP+L +S+K+GVC+V   GKPC T F ++S+NG+SS+VRC P TGR HQIRVHLQ+LGHPILNDPIYN + AWG   G+ G    + K   EL+R
Sbjct:  201 LKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN-SVAWGPSRGRGGY---IPKTNEELLR 413

The following BLAST results are available for this feature:

BLAST of TCONS_00070285 vs. Swiss-Prot (Human)

BLAST of TCONS_00070285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RUSD2	1.878e-85	56.68	RNA pseudouridylate synthase domain-containing pro...	[more]

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TCONS_00070285 (transcript) - C. hemisphaerica