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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=transcript|length=1129bp
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAAT
TTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATA
CCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCT
CGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACC
GTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAA
GCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGC
TCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGT
TATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGG
AAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAG
CTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCC
ATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCAT
GCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGT
CAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACG
ACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAG
AAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGG
GGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAA
TAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTA
AAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAA
GTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAA
ACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGAC
CTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGA
GAAGAGAGAAGGAAGCTCTGGGAAGGAGG Run BLAST on NCBI protein sequence of TCONS_00070285-protein >TCONS_00070285-protein ID=TCONS_00070285-protein|Name=TCONS_00070285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
DQIVTRDRKLTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASI
PVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAK
AMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDG
KPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNH
ATAWGEGGGKKGTEIDVKKVVAELIRTRKDKSYDDATGGQDENRATAKSE
KDNNNHRQSKKLKTDDGGSVEVKTEITSNSSNSIDADANQKSKVQNGCSL
KGVRETDNIKTNGTSDKLSHLNIQKANSTECETNSTTESETSAMENKVKD
LSTLKCEENSNKESVAEKREGSSGKE Run BLAST on NCBI transcript from alignment at scaffold_52:16307..23454+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=transcript|length=7148bp|location=Sequence derived from alignment at scaffold_52:16307..23454+ (Clytia hemisphaerica)
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGGTAAAAGCATGAGACTTTATGAGTTATTCCCACTG
ACCTTCATAAACCCTTggccaagctatatccgccatctttaatcAGAGCT
ATCTTTATGAAAAAGGGTTTCTGCAATGAATCCATTGCAGTGTTGAAGCC
TTGCCTAATGTTGAACTTAACCCGAAAATCAATACTATGTGtgttgaatt
tttcaaatttgcaacatttttgcaacttttcCAACGATTCGAACGTTCTA
CAGCCAAACTCACTAAGTTAACTTTATATTTacgaatttgttttttttaa
tatggtAAGTGCAACCAACCATAGGAAATCGGGAAATAGGCAGGAAAGTC
AGTAATCGGCAGATCGGGATCCCCCCGACAacaagaaagtaaacaaaaca
tttttgtcaacaaaaccaaaaaagAACTGAAAACCTTTTGTTTAAGGTGA
CACTACTGATTGGCTGGGTTTGTCTTGCTACTTTGACTACATTGAATTGA
TTCAATTTGCTTTAAAATTATCAACAACattaaaaagtgcaattaattTC
AATAGGCAATTAAGATTAAAcattattctcaacttcagttgagttagaat
ctgagaatgtgtgtctgtctgtgtgtctgtctgtgtgtgtgtatgtccca
aaactttggggcagcctggagacttcaaAAATTGTTCGATGTGGCTGAAA
TTTGGCACACTTGTTCCTTGGGTGAATATCTGGAGTTTTTCTTTTTCATT
TTTCAAAATTTCTGATTTTTGGGGCCTGGGGACGAGTTTTCGCCAAAACG
Aggctaaaactttggggcagcctggagacttcaaaaatggtcggatttgg
ctgaaattttgcacacttgttccttgggtgaatatctgggggtgtttttt
cccattttttaaaagttttgatttttggggactggggacgagtttttcgc
caaaacgaggctaaaactttggggcaggctggagacttcaaaaatagtcG
GATTTGcttaaattttgcacacttgttccttgggtgaatatctgggggtg
ctttttaaatttttcaaaaattttgatttttggggcctgggaaggagttt
ttttgccaaaacgaggctaaagctttggagcagtctacaggcctccaaaa
tgatcggatttggttgaaattcggcacacttgttcatcgggtgaatatct
gggggtctacacctgggcctatgaatgatttgaagccactgaagttgagc
ccagtgcgttgcgcacgttcgactattagaATAGAGAATTGACATTAAAG
CAATAAAAGGAACTTGTTCCAAACGTCTCTTCCAAAATCATTACACATTT
CTTATCTCTAGACATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCT
ACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATACCGG
TCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGA
AAAGACCACGGGCTAGAGCGGCTGCATAGTATGTATGTTTATCTGTGGGC
CATAGGTAGTTAGGACTGGTTGCGCTCTAGTAACGACTTCCGGTTGGTTA
GACgcaaagatcgaattagagaagattttaaattgaagattttcaacatt
tttcaaaactttagaCCAATAGTTAGTCgacattagcgcgcagtggccCT
GATTACCCATCATGCTTTGTGACTATGAAGTGACCTATTCGACTGACCGT
GTTGTGGTAAACAGTATGGAAATACTTAATTGTTGAATCCATCTTTTATG
CGAATCTTAATCTGTGTTGAGTCACGTCTCTACAATACGCATGTTGAAAG
GTATAGAGTTTTTTTAACGTAATTCCCGCCATTAtagaagcaaacgttcg
aatctgtagaggggatcccttacgcaaatcgaacgtttgcttccataatg
gcggaagttaCGTAATTTAACAAAACATGAGAAACCTCTATTTTTGTCTT
GATTATTCTTCGATCATCCGATCGTTTTTACTCTTTCCTTTTGTTTTAGC
GATCCATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAGT
CAGTATTATTTCGACTTAAGCTAAATTATTTAAATACCATACgctggtct
aatctcgacatccgtcATCTAATTAGGACACCCTTCTTTACAGTTGGGAA
TAAAAGGACGGTCGGAATAATACATCAGTCGGAGTTGCTGATAGAGAAAC
TATAATTTTGCTTAGAAAAAATctttgtctatcagtgattccgacctttc
tattattcctatctttaaagaagggtgtcgaaattagatgaaggatgtcg
aaattagacaaACTCACGGTAGTATCTTTGAaactatatttttgtttttg
cttagcgatcagggaggaaaaaatcttttgtctatcagtgattctgacct
tcctattattcctatctttaaagaagggtgtcgaaattagatgaaggatg
tcgaaattagacaaACTCACGGTAGTATCTTTGAaactatatttttgttt
ttgcttagcgatcagataggaaaaaatcttttgtgtatcagtgatttcga
ccttctcattattcctatctttaaagaagaaTATCGGAACTAgaagaggg
gtgtcgacattagaccaacttacagtagtATTTTTGAATCCTTCACAACA
GATGAATATCTGGTCAGAAGCAGAATAAGATACCCAACCTCGTCCACGTG
TAACCTAGGCTTTATTTACGATAaatgatggacgccagagattATCATTT
GGGTGTcaattgtctgtacacaaacccgatatctacggcttatttcaaaa
ttcattgccgtatagggtctgttgtcattgtcttcaaaccgaccgctgcg
atggagtgttggtaaGAGAGGGGAGACGAAGAGAGAaatgttgctattta
taaatcatacttcatcgcagaggtctccgtgggggaatttttttatcaaa
cagacaatgcgcacagagtgtactacgaagcgataaacgtgagatacact
ctggcaCAGAGTAGGTATAAgtaagtatcaagtatcaaaagCCGATAATA
CACGGGGTACGAGGTTTTTGGCCACCGTATCAGGTAAAATGGTCTGTTTC
TCAAATTTTTACCCCCTTTTCTTCGATAAGATAAGATTTCTTTCACCGAA
AGAAAAACACATTTAGTATCTATCTTGAaacaacccagctggcacacaac
gttttttcgacgtttatctaacgttcacaacgtccatataacgttagatg
aacgttgaaacaacgttgtgggcCAGCTGGGAAAGGGCAAAATGTTCCCT
TTCAGAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACG
GAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGGT
AAGTGGAAAGTTGTTTGTTTTTGTCAATACTGTTTGGCAACATATATACT
CTTTTCTCgagttcttttcttttttgtcgatAAAAGTTTGACCCATCATG
TAATAGATTTTTTCTTGACTTACCCTTAGTTTCTGAgaatctttttatag
aatttttcTCGAGTCTGAGAACTTTTGTGTCACGTGAACAGCAGCTCTCA
CTTGAAAAATAATGATCATAAGAAACTATGAAAAATGATCAAACATATTT
CTTTAGTCCGCCCATTATTAACGACTTTTAAAGAAAACCTCATTTTTTCA
TTACTAAGCAATGAATATAAAGTGCTCATTAAAAAACATTATCCAAATGA
AACCGGACAGGCTGTAAATTTCgcatctacaatcagtgccaaaatacttg
gcacaaaagggaaattccccacgaaATTCTATAaacacaaacaatttgga
agcgctctaaattaggttggaagggtagagttttaactctgagttttaac
gctagacttaagatcttaggatctgaggatccaaaagttcaaaaatggtc
cggtagggcttgaaatatagcctagaaaccaataaatccctcacagatcg
aaatattcgatgaagccaagttgaaggcccgaaattaacattctcgctcg
aacttcaattttcgaaaaatggtagaatagccaaaattgccaatatgtta
tggcactgattgttgGTCTGTTTGTGTCTGTGCTTGACCATCTAAACCTA
ATATGTGGTTAGACTGGagattcaaaaataattaactGGAATTTGgcgca
aagcttctgattgtctgtttttttttcatttttcttattttcacattttc
agGTCTGCGGACTTAATGATATTCTCTACAGTCAACACGGCATATTCTCT
TGTTACAAATTTTTCCAAACcattaagggaacttattttggtgagaacta
attttggcaaatttgatgagtttagacaaaattcgccaaaatgaattttt
gttgtttttttgtctcAATATCcttaaattcatcaaaattgcaaaaaagg
ACAGGTTTAGGTTattgtcattcgccaaaattagatctcgccaaatttac
caaattttGGACCATTCGTCAAAATAAGTTCTTgtcaatattaaaaattt
tcaaaatttagtaattcgccaaaattagttttcgCCGAAATAAGTTCGCT
AAATGTAATGAGCTGTTATTGAATAATTGCCAACTCCAGTGCAGGATTTC
TCGTTGTCAATCAATTTCGTTCACTTTGGTTTATATTTCTAGTGAAAGTA
TTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGT
CAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATC
GTTCAATGGTAAAAGCAGCTTGGTTCGTTGTAAGTTAATTCTCATGCTTC
ATTCTTTTtattagtgttttttttttcttttgcactgaggtttttaaatg
aaacaatagagtttCGAAatctaagccaatcagctgtgctttaaacattc
ttttgttttagatctctattgataaacttctttggttaaaaatttctatt
atgTTTAATCCTACTAATAGGTGAATTCCCGTTGGGGGTCatatatacag
tggagtctccataactcgaaaaccACACGTGTAAAACAaagttgttcgag
ttaaggataTTTCGAATTATGATTAACATTtaaaaggcattgttaactga
agggacgaggaAGCTTGTTCAAGTTAATAAGGAGATATTCAATTTAAAGA
GgttgagttaaagagactctattGTATTATTTCCAAAAGGATCTTTAGTC
CTTGTACACGAGCGTCACGGGTGATTTTTCNTTAAGGAGgttgagttaaa
gagactctattGTATTATTTCCAAAAGGATCTTTAGTCCTTGTACACGAG
CGTCACGGgtgatttttcacttttagaAAACTTGATAGGTTAGCCTCCGT
ACTTTTTCTTTCCGAAGAAGAagagttttgtttcatttttccataAATGt
acccgtttcatatcagacacatatttcatatcaggacagtgNTTCACATA
AGTGtacccgtttcatatcagacacatattttatatcaggacagtatcta
cctattgttatatcatgctgatataagcaaaaaatggttattatttcctc
tttctgaccaatcttgctccacatccgtttCAAACCaaagtgaaaaagct
tgtaaattaaaattgacgagtaagcaaacgatatcactcttatttaaaaa
caaaacctttaacatgtAAGATTAAATAATGTTTATTTCCAATCCTTTAT
TCGGTGTAGGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCCAT
TTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCATGC
CACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCA
AAAAGGTTTGAAATACGTGTTGGGTATAGCCTGGATATATTCTTTTTAAT
CAAGCCTGGAATCAGAAGCCTGATATAAGGCTGACggcaatagcgagttt
atgtattcgagataaatcgagggggacggtataaagcaaagctgacatgg
ggtcaaaatcgccgtccactttgctcgacgacggtaaaaacaccaagata
ccgtcgtctgtttaggtgagcaaaggcgatattgagccgtacatcaacta
tcgactttgttttgtatcgatttcacttaccgtcgccctcgatatcctcc
gatacataaactcggtaatatagCGTGTTTAGGTGGTGTGTTTAGCCTCT
ACGCTATATGTCTTTTTAATCAAGCCTTGAATCATAAGGCTTAGCTAAAG
CTGATGGCACTAAAGCGTCATCGGCGCTTagcttttttaagcttttttaa
ttCTAGTAAGTGAAACTAGCTTGGATTCCTAGGATATTCTAGAGATTATT
ATGATCAAATCTAGAATCACAGGCTCATAGGTACGGAAAAGTTTATACCG
ATAGAAATTGGGCTTAAAATTGGGAAACCGGTCTCTCGGAAGACGCTCTT
TTTCAGACCTGTACAAATAAAACGATGCTAGTATTTTGTTTGATGAGAAA
TAATAGAATTGCTGAACAAATTCCAGGTGGTGGCTGAACTCATCCGAACA
CGTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAG
AGCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAA
AGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACG
TCTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGT
TCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAA
CGAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAAC
TCAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAAT
GGAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTA
ATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGG Coding sequence (CDS) from alignment at scaffold_52:16307..23454+ >TCONS_00070285 ID=TCONS_00070285|Name=TCONS_00070285|organism=Clytia hemisphaerica|type=CDS|length=7896bp|location=Sequence derived from alignment at scaffold_52:16307..23454+ (Clytia hemisphaerica)
GATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAA
GACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAAT
TTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATA
CCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCT
CGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACC
GTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAA
GCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGC
TCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGT
TATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGG
AAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAG
CTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCC
ATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCAT
GCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGT
CAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACG
ACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAG
AAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGG
GGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAA
TAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTA
AAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAA
GTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAA
ACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGAC
CTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGA
GAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTGTGACAAGAGATC
GCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACCGACATGAA
CCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAACGACCAAGATAT
GATTGTCATCAACAAACCAGCCTCCATACCGGTCCATCCCTGTGGCCGGT
ACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGACCACGGGCTAGAG
CGGCTGCATACGATCCATCGAATCGACCGTTTGACATCTGGTATACTTAT
GTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACG
GACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCT
AGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAAT
CGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTC
ACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGT
ACAGGACGTATGCATCAGATACGAGTCCATTTGCAATGGCTTGGTCACCC
CATTCTAAACGATCCGATTTACAATCATGCCACAGCTTGGGGTGAAGGTG
GTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTGGTGGCTGAACTC
ATCCGAACACGTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGA
CGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTC
AGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACG
GAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAA
AAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACA
ATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAG
AAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAAC
TTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAG
AAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGG
AAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAAAGACAT
CCTCAAGACAATTGTTCACCGACATGAACCACCTGTTGTGCACGAACCTT
TCGAATTTCTACAGAACGACCAAGATATGATTGTCATCAACAAACCAGCC
TCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGTGGTCTT
CATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCCATCGAA
TCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAAACACCAGAGAAA
GCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAAAGTATA
CTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAG
AACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTTCATGTA
GACGGGAAACCATGCTCTACCACTTTTCACAAGATATCGTTCAATGGTAA
AAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATCAGATAC
GAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCGATTTAC
AATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGAT
TGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGGACAAGT
CGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACGGCAAAA
TCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAAAACAGA
CGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATTCTTCGA
ATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGT
TCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGGTACTTC
AGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTGAGTGTG
AAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAACAAAGTT
AAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGAGAGTGT
GGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTGTGACAA
GAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTTCACCGA
CATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAACGACCA
AGATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCCATCCCTGTG
GCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGACCACGGG
CTAGAGCGGCTGCATACGATCCATCGAATCGACCGTTTGACATCTGGTAT
ACTTATGTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGACAGCAG
TTCACGGACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAAGGTGAT
TTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCATGTCTCA
TAAAATCGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCTCTACCA
CTTTTCACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTA
CCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCAATGGCTTGG
TCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAGCTTGGGGTG
AAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTGGTGGCT
GAACTCATCCGAACACGTAAGGACAAGTCGTACGACGACGCCACTGGTGG
TCAGGACGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATAATAATC
ATCGTCAGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTCGAAGTA
AAAACGGAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGATGCTAA
TCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAA
CAGACAATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCATTTAAAT
ATTCAGAAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGACAGAGAG
CGAAACTTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTCTAAAAT
GTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGC
TCTGGGAAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGACAAGTAA
AGACATCCTCAAGACAATTGTTCACCGACATGAACCACCTGTTGTGCACG
AACCTTTCGAATTTCTACAGAACGACCAAGATATGATTGTCATCAACAAA
CCAGCCTCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAATACCGT
GGTCTTCATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATACGATCC
ATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAAACACCA
GAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGTGGAGAA
AGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTATTGTCG
TTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGTCAAGTT
CATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATCGTTCAA
TGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTATGCATC
AGATACGAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAACGATCCG
ATTTACAATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAAAGGGAC
AGAGATTGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACACGTAAGG
ACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGAGCTACG
GCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAAGCTGAA
AACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGTCTAATT
CTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTTCAAAAT
GGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAACGAACGG
TACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACTCAACTG
AGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATGGAGAAC
AAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAATAAGGA
GAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAGGATCAGATTG
TGACAAGAGATCGCAAGTTGACAAGTAAAGACATCCTCAAGACAATTGTT
CACCGACATGAACCACCTGTTGTGCACGAACCTTTCGAATTTCTACAGAA
CGACCAAGATATGATTGTCATCAACAAACCAGCCTCCATACCGGTCCATC
CCTGTGGCCGGTACCGTCATAATACCGTGGTCTTCATTCTCGGAAAAGAC
CACGGGCTAGAGCGGCTGCATACGATCCATCGAATCGACCGTTTGACATC
TGGTATACTTATGTTCGCCAAAACACCAGAGAAAGCTAAAGCAATGGAGA
CAGCAGTTCACGGACGGAATGTGGAGAAAGTATACTACGCTCGCGTCGAA
GGTGATTTCCCTAGTGAAAGTATTGTCGTTGAAGAACCGTTATTAACCAT
GTCTCATAAAATCGGTGTTTGTCAAGTTCATGTAGACGGGAAACCATGCT
CTACCACTTTTCACAAGATATCGTTCAATGGTAAAAGCAGCTTGGTTCGT
TGTTTACCACGTACAGGACGTATGCATCAGATACGAGTCCATTTGCAATG
GCTTGGTCACCCCATTCTAAACGATCCGATTTACAATCATGCCACAGCTT
GGGGTGAAGGTGGTGGAAAGAAAGGGACAGAGATTGATGTCAAAAAGGTG
GTGGCTGAACTCATCCGAACACGTAAGGACAAGTCGTACGACGACGCCAC
TGGTGGTCAGGACGAAAATAGAGCTACGGCAAAATCCGAGAAAGACAATA
ATAATCATCGTCAGTCGAAAAAGCTGAAAACAGACGACGGGGGTTCTGTC
GAAGTAAAAACGGAGATAACGTCTAATTCTTCGAATTCAATAGACGCTGA
TGCTAATCAGAAAAGTAAAGTTCAAAATGGCTGTTCACTAAAAGGGGTGA
GAGAAACAGACAATATAAAAACGAACGGTACTTCAGACAAGTTAAGTCAT
TTAAATATTCAGAAGGCAAACTCAACTGAGTGTGAAACAAACTCTACGAC
AGAGAGCGAAACTTCTGCAATGGAGAACAAAGTTAAAGACCTTTCTACTC
TAAAATGTGAAGAAAATTCTAATAAGGAGAGTGTGGCGGAGAAGAGAGAA
GGAAGCTCTGGGAAGGAGGATCAGATTGTGACAAGAGATCGCAAGTTGAC
AAGTAAAGACATCCTCAAGACAATTGTTCACCGACATGAACCACCTGTTG
TGCACGAACCTTTCGAATTTCTACAGAACGACCAAGATATGATTGTCATC
AACAAACCAGCCTCCATACCGGTCCATCCCTGTGGCCGGTACCGTCATAA
TACCGTGGTCTTCATTCTCGGAAAAGACCACGGGCTAGAGCGGCTGCATA
CGATCCATCGAATCGACCGTTTGACATCTGGTATACTTATGTTCGCCAAA
ACACCAGAGAAAGCTAAAGCAATGGAGACAGCAGTTCACGGACGGAATGT
GGAGAAAGTATACTACGCTCGCGTCGAAGGTGATTTCCCTAGTGAAAGTA
TTGTCGTTGAAGAACCGTTATTAACCATGTCTCATAAAATCGGTGTTTGT
CAAGTTCATGTAGACGGGAAACCATGCTCTACCACTTTTCACAAGATATC
GTTCAATGGTAAAAGCAGCTTGGTTCGTTGTTTACCACGTACAGGACGTA
TGCATCAGATACGAGTCCATTTGCAATGGCTTGGTCACCCCATTCTAAAC
GATCCGATTTACAATCATGCCACAGCTTGGGGTGAAGGTGGTGGAAAGAA
AGGGACAGAGATTGATGTCAAAAAGGTGGTGGCTGAACTCATCCGAACAC
GTAAGGACAAGTCGTACGACGACGCCACTGGTGGTCAGGACGAAAATAGA
GCTACGGCAAAATCCGAGAAAGACAATAATAATCATCGTCAGTCGAAAAA
GCTGAAAACAGACGACGGGGGTTCTGTCGAAGTAAAAACGGAGATAACGT
CTAATTCTTCGAATTCAATAGACGCTGATGCTAATCAGAAAAGTAAAGTT
CAAAATGGCTGTTCACTAAAAGGGGTGAGAGAAACAGACAATATAAAAAC
GAACGGTACTTCAGACAAGTTAAGTCATTTAAATATTCAGAAGGCAAACT
CAACTGAGTGTGAAACAAACTCTACGACAGAGAGCGAAACTTCTGCAATG
GAGAACAAAGTTAAAGACCTTTCTACTCTAAAATGTGAAGAAAATTCTAA
TAAGGAGAGTGTGGCGGAGAAGAGAGAAGGAAGCTCTGGGAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070285-exon-scaffold_52-1491911889:16307..16371 | TCONS_00070285-exon-scaffold_52-1491911889:16307..16371 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:16307..16371 | TCONS_00070285-exon-scaffold_52-1510915933:16307..16371 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:16307..16371 | TCONS_00070285-exon-scaffold_52-1575043694:16307..16371 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:17718..17884 | TCONS_00070285-exon-scaffold_52-1491911889:17718..17884 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:17718..17884 | TCONS_00070285-exon-scaffold_52-1510915933:17718..17884 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:17718..17884 | TCONS_00070285-exon-scaffold_52-1575043694:17718..17884 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:18406..18454 | TCONS_00070285-exon-scaffold_52-1491911889:18406..18454 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:18406..18454 | TCONS_00070285-exon-scaffold_52-1510915933:18406..18454 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:18406..18454 | TCONS_00070285-exon-scaffold_52-1575043694:18406..18454 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:19712..19804 | TCONS_00070285-exon-scaffold_52-1491911889:19712..19804 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:19712..19804 | TCONS_00070285-exon-scaffold_52-1510915933:19712..19804 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:19712..19804 | TCONS_00070285-exon-scaffold_52-1575043694:19712..19804 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:21099..21235 | TCONS_00070285-exon-scaffold_52-1491911889:21099..21235 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:21099..21235 | TCONS_00070285-exon-scaffold_52-1510915933:21099..21235 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:21099..21235 | TCONS_00070285-exon-scaffold_52-1575043694:21099..21235 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:22166..22311 | TCONS_00070285-exon-scaffold_52-1491911889:22166..22311 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:22166..22311 | TCONS_00070285-exon-scaffold_52-1510915933:22166..22311 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:22166..22311 | TCONS_00070285-exon-scaffold_52-1575043694:22166..22311 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1491911889:22983..23454 | TCONS_00070285-exon-scaffold_52-1491911889:22983..23454 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1510915933:22983..23454 | TCONS_00070285-exon-scaffold_52-1510915933:22983..23454 | Clytia hemisphaerica | exon |
| TCONS_00070285-exon-scaffold_52-1575043694:22983..23454 | TCONS_00070285-exon-scaffold_52-1575043694:22983..23454 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:16307..23454 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0001522 |
pseudouridine synthesis |
| biological_process |
GO:0009451 |
RNA modification |
| molecular_function |
GO:0009982 |
pseudouridine synthase activity |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00070285 vs. Swiss-Prot (Human)
Match: RUSD2 (RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2) HSP 1 Score: 272.707 bits (696), Expect = 1.878e-85 Identity = 123/217 (56.68%), Postives = 161/217 (74.19%), Query Frame = 1
Query: 28 LTSKDILKTIVHRHEPPVVHEPFEFLQNDQDMIVINKPASIPVHPCGRYRHNTVVFILGKDHGLERLHTIHRIDRLTSGILMFAKTPEKAKAMETAVHGRNVEKVYYARVEGDFPSESIVVEEPLLTMSHKIGVCQVHVDGKPCSTTFHKISFNGKSSLVRCLPRTGRMHQIRVHLQWLGHPILNDPIYNHATAWGEGGGKKGTEIDVKKVVAELIR 678
L D L+ VHRHEPPV EP L ++D++V++KP+SIPVHPCGR+RHNTV+FILGK+H L+ LH +HR+DRLTSG+LMFAKT ++ + V R +EK Y RVEG+FP+E + +EP+L +S+K+GVC+V GKPC T F ++S+NG+SS+VRC P TGR HQIRVHLQ+LGHPILNDPIYN + AWG G+ G + K EL+R
Sbjct: 201 LKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSSIPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQFLGHPILNDPIYN-SVAWGPSRGRGGY---IPKTNEELLR 413
The following BLAST results are available for this feature:
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