TCONS_00066227-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066227-protein
Unique NameTCONS_00066227-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066227-protein ID=TCONS_00066227-protein|Name=TCONS_00066227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
MSLLKIYLMFLAIINQCWKVQLFNRLDAVTYLINYGFLQSKHHPNDPQVT
FALRKFQEYNKLRQTGVLDRKTLEIMNSPRCGMKDVDKYQQNKSSSYTQG
NLFTNTKHTQTNHFKLTNTDNIFWYYVSNATIPSYLDEDLVYKALEYAFN
RWSSITNVRFKNGAMHGKPDIYIGFYAGNHSDPSPFDGVGGKVAHAANLD
LSYRKIGFIHFDLAEHWLINQTSEYYFEVPKHDNKPGSGVDFVYTAIHEV
GHVLGLNHVPNRIKSVMNTVLPTPVLGDYRLFDYDVLQIQASYGKCQPKK
FDSIFSINDQTYIIVGPFVYLFDSIKHTVDRKRPWPRLTKEIFGMDLIRE
GFSFEGFLYLFQKTKYNVLQTQNTIPMKKILQYNTPAWYSMITFSIDAAF
THIDGYTYLFQQSFVYRWNSTGPPYDRLPNGKVADGWPKKISAVFPGLPN
SIDTAFRWPLDGRTYFFKGPHFYIWDPVSNKADGLYSIAQWRNVCDVFVC
RKHSNPFCINSDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041445XLOC_041445Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066227TCONS_00066227Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR018487Hemopexin-like_repeat
IPR006026Peptidase_Metallo
IPR000585Hemopexin-like_dom
IPR002477Peptidoglycan-bd-like
IPR001818Pept_M10_metallopeptidase
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021190Peptidase M10APRINTSPR00138MATRIXINcoord: 145..160
score: 35.75
coord: 76..89
score: 47.3
coord: 245..270
score: 36.12
coord: 281..294
score: 46.17
coord: 169..197
score: 50.88
IPR018487Hemopexin-like repeatsSMARTSM00120HX_rpt_3coord: 452..495
e-value: 0.23
score: 20.2
coord: 396..450
e-value: 8.5E-4
score: 28.6
coord: 301..345
e-value: 2.9
score: 12.0
IPR018487Hemopexin-like repeatsPFAMPF00045Hemopexincoord: 452..477
e-value: 1.6E-5
score: 24.6
coord: 396..449
e-value: 2.2E-5
score: 24.2
IPR018487Hemopexin-like repeatsPROSITEPS51642HEMOPEXIN_2coord: 298..347
score: 8.356
IPR018487Hemopexin-like repeatsPROSITEPS51642HEMOPEXIN_2coord: 449..495
score: 13.986
IPR018487Hemopexin-like repeatsPROSITEPS51642HEMOPEXIN_2coord: 393..448
score: 9.997
IPR006026Peptidase, metallopeptidaseSMARTSM00235col_5coord: 120..295
e-value: 1.2E-18
score: 77.9
IPR000585Hemopexin-like domainGENE3D2.110.10.10coord: 366..508
e-value: 1.8E-19
score: 70.0
IPR000585Hemopexin-like domainGENE3D2.110.10.10coord: 298..365
e-value: 0.0072
score: 16.1
IPR000585Hemopexin-like domainSUPERFAMILY50923Hemopexin-like domaincoord: 295..487
NoneNo IPR availablePIRSFPIRSF001191MMP_stromelysincoord: 14..495
e-value: 1.9E-63
score: 212.7
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 120..294
IPR002477Peptidoglycan binding-likePFAMPF01471PG_binding_1coord: 28..76
e-value: 1.7E-9
score: 37.7
IPR002477Peptidoglycan binding-likeSUPERFAMILY47090PGBD-likecoord: 24..86
IPR001818Peptidase M10, metallopeptidasePFAMPF00413Peptidase_M10coord: 125..294
e-value: 1.1E-28
score: 99.9
IPR024079Metallopeptidase, catalytic domainGENE3D3.40.390.10coord: 21..297
e-value: 2.4E-49
score: 167.4

Blast
[Close]
BLAST of TCONS_00066227-protein vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.445e-32
Identity = 144/487 (29.57%), Postives = 208/487 (42.71%), Query Frame = 0 
Query:   39 QSKHHPNDPQVTFALRKFQEYNKLRQTGVLDRKTLEIMNSPRCGMKDVDKYQQNKSSSYTQGNLFTNTKHTQTNHFKLTNTDNIFWYYVSNATIPSYLDEDLVYKALEYAFNRWSSITNVRFKNGAMHGKPDIYIGFYAGNHSDPSPFDGVGGKVAHAANLDLSYRKIGFIHFDLAEHWLINQTSEYYFEVPKHDNKPGSGVDFVYTAIHEVGHVLGLNHVPNRIKSVMNTVLPTPVL-GDYRLFDYDVLQIQASYGKCQ----------PKKFDSIFSINDQTYIIVGPFVYLFDSIKHTVDRKRP----------WPRLTKEIFGMDLIREGFSFEGFLYLFQKTKYNVLQTQNTIPMKKILQYNTPAWYSMITFSIDAAFTHID-GYTYLFQQSFVYRWNSTGPPYDRLPNGKVADGWPKKISAVFPGLPNSIDTAFRWPLDGRTYFFKGPHFYIWDPVSNKADGLYSIAQWRNVCDVFVCRKH 503
            Q +   N   V   L++ QE+  L+ TG  D +TL++M  PRCG+ DV ++        T+GN      H       LT       Y + N T P     D+ + A+E AF  WS++T + F      G+ DI I F  G+H D SPFDG GG +AHA          G  HFD  E W  N   EY               +    A HE+GH LGL+H  + I ++M    P+    GD +L   D+  IQA YG+ Q          PK  DS  +  D    I G  ++  D      +   P          WP+L     G++   E F+    +  F+  KY  +Q QN +       Y++  +   +   IDAA +  + G TY F  +  +R++     Y R     +  G+PK I+  FPG+ + +D  F    DG  YFF G   Y +DP + +   L     W      F CRK+
Sbjct:   50 QVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQF------VLTEGNPRWEQTH-------LT-------YRIENYT-PDLPRADVDH-AIEKAFQLWSNVTPLTFTK-VSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIG--GDAHFDEDERW-TNNFREY---------------NLHRVAAHELGHSLGLSHSTD-IGALM---YPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTF-DAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYE-FADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVK-HIDAALSEENTGKTYFFVANKYWRYDE----YKR----SMDPGYPKMIAHDFPGIGHKVDAVFM--KDGFFYFFHGTRQYKFDPKTKRILTLQKANSW------FNCRKN 469
The following BLAST results are available for this feature:
BLAST of TCONS_00066227-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP12.445e-3229.57Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
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