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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066227 ID=TCONS_00066227|Name=TCONS_00066227|organism=Clytia hemisphaerica|type=transcript|length=4383bpRun BLAST on NCBI protein sequence of TCONS_00066227-protein >TCONS_00066227-protein ID=TCONS_00066227-protein|Name=TCONS_00066227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MSLLKIYLMFLAIINQCWKVQLFNRLDAVTYLINYGFLQSKHHPNDPQVTRun BLAST on NCBI transcript from alignment at scaffold_451:338198..349677- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066227 ID=TCONS_00066227|Name=TCONS_00066227|organism=Clytia hemisphaerica|type=transcript|length=11480bp|location=Sequence derived from alignment at scaffold_451:338198..349677- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:338198..349677- >TCONS_00066227 ID=TCONS_00066227|Name=TCONS_00066227|organism=Clytia hemisphaerica|type=CDS|length=12336bp|location=Sequence derived from alignment at scaffold_451:338198..349677- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066227 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 8.663e-31 Identity = 144/487 (29.57%), Postives = 208/487 (42.71%), Query Frame = 2
Query: 164 QSKHHPNDPQVTFALRKFQEYNKLRQTGVLDRKTLEIMNSPRCGMKDVDKYQQNKSSSYTQGNLFTNTKHTQTNHFKLTNTDNIFWYYVSNATIPSYLDEDLVYKALEYAFNRWSSITNVRFKNGAMHGKPDIYIGFYAGNHSDPSPFDGVGGKVAHAANLDLSYRKIGFIHFDLAEHWLINQTSEYYFEVPKHDNKPGSGVDFVYTAIHEVGHVLGLNHVPNRIKSVMNTVLPTPVL-GDYRLFDYDVLQIQASYGKCQ----------PKKFDSIFSINDQTYIIVGPFVYLFDSIKHTVDRKRP----------WPRLTKEIFGMDLIREGFSFEGFLYLFQKTKYNVLQTQNTIPMKKILQYNTPAWYSMITFSIDAAFTHID-GYTYLFQQSFVYRWNSTGPPYDRLPNGKVADGWPKKISAVFPGLPNSIDTAFRWPLDGRTYFFKGPHFYIWDPVSNKADGLYSIAQWRNVCDVFVCRKH 1558
Q + N V L++ QE+ L+ TG D +TL++M PRCG+ DV ++ T+GN H LT Y + N T P D+ + A+E AF WS++T + F G+ DI I F G+H D SPFDG GG +AHA G HFD E W N EY + A HE+GH LGL+H + I ++M P+ GD +L D+ IQA YG+ Q PK DS + D I G ++ D + P WP+L G++ E F+ + F+ KY +Q QN + Y++ + + IDAA + + G TY F + +R++ Y R + G+PK I+ FPG+ + +D F DG YFF G Y +DP + + L W F CRK+
Sbjct: 50 QVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQF------VLTEGNPRWEQTH-------LT-------YRIENYT-PDLPRADVDH-AIEKAFQLWSNVTPLTFTK-VSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIG--GDAHFDEDERW-TNNFREY---------------NLHRVAAHELGHSLGLSHSTD-IGALM---YPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTF-DAITTIRGEVMFFKDRFYMRTNPFYPEVELNFISVFWPQLPN---GLEAAYE-FADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVK-HIDAALSEENTGKTYFFVANKYWRYDE----YKR----SMDPGYPKMIAHDFPGIGHKVDAVFM--KDGFFYFFHGTRQYKFDPKTKRILTLQKANSW------FNCRKN 469 The following BLAST results are available for this feature:
BLAST of TCONS_00066227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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