TCONS_00065208-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065208-protein
Unique NameTCONS_00065208-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length142

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065208-protein ID=TCONS_00065208-protein|Name=TCONS_00065208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MGDGKWECSVCTYKNKSEAFKCEICDTRKGTSTRKPRVTATMVAQQIISS
FPPIPPMPPSNKYQKSNSGGKRSRKSMQSASKLKNIDRETGKDIQVTVNG
ITITITDYKLSPHAMESETPERESSPIEPSTGGASSQSTETE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040883XLOC_040883Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065208TCONS_00065208Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR033774YAF2_RYBP
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 4..28
e-value: 4.4E-8
score: 42.8
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 4..29
e-value: 7.0E-9
score: 34.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 6..25
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 2..31
score: 9.665
IPR001876Zinc finger, RanBP2-typeSUPERFAMILY90209Ran binding protein zinc finger-likecoord: 4..29
IPR033774Yaf2/RYBP C-terminal binding motifPFAMPF17219YAF2_RYBPcoord: 81..110
e-value: 1.7E-11
score: 43.3
NoneNo IPR availableGENE3D4.10.1060.10coord: 1..83
e-value: 1.7E-9
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..142

Blast
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BLAST of TCONS_00065208-protein vs. Swiss-Prot (Human)
Match: YAF2 (YY1-associated factor 2 OS=Homo sapiens GN=YAF2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 3.151e-26
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 0 
Query:    3 DGKWECSVCTYKNKSEAFKCEICDTRKGTSTRKPRVTATMVAQQIISSF-PPIPPMPPSNKYQKSNSGGKRSRKSMQSASK----LKNIDRETGKDIQVTVNGITITITDYK 109
            +G W+CSVCT++N +EAFKC +CD RKGTSTRKPR  + +VAQQ+   F PP           +     K +     S  K    LKN+DR + + ++VTV  +T+ ITD+K
Sbjct:   20 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFK 131
The following BLAST results are available for this feature:
BLAST of TCONS_00065208-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YAF23.151e-2642.86YY1-associated factor 2 OS=Homo sapiens GN=YAF2 PE... [more]
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