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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065208 ID=TCONS_00065208|Name=TCONS_00065208|organism=Clytia hemisphaerica|type=transcript|length=1444bp
gtaaaacaacttaTTAAATTGCTCTCTCCTTAAGAAGGAAGACAAGATGa
agatctttgttttgcttttatttcaaagtttcaTGGTATTGGCCTTTAAT
AAGTCAATAAATTGAACTTAAGAATACTTGTATGATGAATTTATTAAAAT
AACTAATTTCATAATCCACCgttttttgttcttttagtaaaaatatATCT
CcataaaaacgcaaaaaataataaaaacacgATGGGTGATGGAAAATGGG
AATGCTCAGTATGTACGTACAAAAACAAATCCGAAGCTTTCAAATGTGAA
ATATGCGACACTAGGAAAGGTACCTCTACAAGGAAACCACGAGTGACAGC
TACAATGGTGGCTCAACAAATCATATCTTCTTTCCCTCCAATCCCTCCTA
TGCCACCGAGCAATAAATATCAAAAGTCCAATTCTGGTGGAAAACGATCA
CGGAAAAGtaTGCAATCTGCCAGTAAACTGAAGAATATCGATCGAGAAAC
TGGTAAAGACATCCAAGTCACTGTAAATGGGATCACTATCACAATCACTG
ACTACAAATTATCTCCACACGCCATGGAAAGTGAAACACCCGAACGTGAA
TCGTCGCCTATCGAACCATCTACTGGAGGTGCTTCTTCACAGAGTACAGA
AACAGAATGAACGACTTCATTGGTTCAAACGTTCGTATTTGAATGGTCTC
GTGTTAGTATTCTTCGGATGAATTTTGTTCGAGGTATAATGTGCAGAATG
AAGCATTTTCTTTCCTCATCATGAGTCTTatgaaaaacaatttgaaagaa
GACTTTGACGACATGCGATAGAAATACCAGAAATGCTATTATTCGCTTTA
TTGTTGACATTGTGTCGTTCATATTTTGATTGATCGGAGAGCATTACGAA
TAAATGCTTTTTTCGCTAACAAACTTGTGTTTTTCCAAACTGGCTTTTGA
AACGGTTTTCATAGAGGTTTTTTTATTCGCAAAGGTCAATGGTTTGTATC
AAGGTCTTGTGAGAATGAGTAACTTTACATAAACCTAATATTGATGGAGT
TTTCAATGAAGTGATTGAGGAATCAAGGAGGAGATGGATATTATTGTCAG
TACCAATCTTTACCGAAGAATTTAACATTGATTGGCTTTACTCCAAACGC
TCTAAGTAAATTTTATATCCAGTCAACTGTAATTCAGTTAAACTAATTGA
AAATTTAACTGTCTGTAACTTAATATTGAGAGCTGTAGTCTCTTGAACAT
TGCTCACCAAATGAACGTGGCTGGAATGGCCCTTTCGAATGGATTTGAAC
ATGTCAACAGAAATGCTTTGTAcccaaaaaaaacaattcttttACATTTA
GCATGATTTTTAATACTTGTAACTTTTGTATCTTTATGTCTAATTATTTG
ATATGAAAAAGAGCCTTTTAAAAAGGTTATATGATAAGCATTCG Run BLAST on NCBI protein sequence of TCONS_00065208-protein >TCONS_00065208-protein ID=TCONS_00065208-protein|Name=TCONS_00065208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MGDGKWECSVCTYKNKSEAFKCEICDTRKGTSTRKPRVTATMVAQQIISS
FPPIPPMPPSNKYQKSNSGGKRSRKSMQSASKLKNIDRETGKDIQVTVNG
ITITITDYKLSPHAMESETPERESSPIEPSTGGASSQSTETE Run BLAST on NCBI transcript from alignment at scaffold_433:351462..356052- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065208 ID=TCONS_00065208|Name=TCONS_00065208|organism=Clytia hemisphaerica|type=transcript|length=4591bp|location=Sequence derived from alignment at scaffold_433:351462..356052- (Clytia hemisphaerica)
GTAAAACAACTTATTAAATTGCTCTCTCCTTAAGAAGGAAGACAAGATGA
AGATCTTTGTTTTGCTTTTATTTCAAAGTTTCATGGTATTGGCCTTTAAT
AAGTCAATAAATTGAACTTAAGAATACTTGTATGATGAATTTATTAAAAT
AACTAATTTCATAATCCACCGTTTTTTGTTCTTTTAGTAAAAATATATCT
CCATAAAAACGCAAAAAATAATAAAAACACGATGGGTGATGGAAAATGGG
AATGCTCAGTATGTACGTACAAAAACAAATCCGAAGCTTTCAAATGTGAA
ATATGCGACACTAGGAAAGGTACCTCTACAAGGTATGTCTCCATAAAGGA
GAATGGTACAAACTTGTTCTTTGGACTGCATCATTTTCAAAATCATAATT
CATATCATATTTAAATTTTTTGTTTTTAAATAAGGGTGATGTCATTTGCT
TACTTACTTAGATTTCACATTCACATTGGATTGATACGGATGTGAAGCAA
GATTGGTCAGAAAGATTAAAAAAACATTTTTTTGCTTATTTATCAGCATA
ATATAACAATAGGCGGACACTGTCCCGATATGAAATATGTGTCTGATATG
AAACGAGAACACTTATGTAAAAACAAAACCTTTAAAATAATTAAAAGTGC
CAATACTTTCTATAAAAATGTTTTCAGGTTATTGTTTTGTCTATGCTGTT
AAATTGAAGAGGTGATCTTCATTCTTTTCACTTCTCAAGTTAGTTTGTAA
TTTTTCACTTCTAGGAAACCACGAGTGACAGCTACAATGGTGGCTCAACA
AATCATATCTTCTTTCCCTCCAATCCCTCCTATGCCACCGAGCAATAAAT
ATCAAAAGTCCAATTCCGGTGGAAAACGATNCCCTCCTATGCCACCGAGC
AATAAATATCAAAGGTCCAATTCTGGTGGAAAACGATCACGGAAAAGGTT
TGTGTAATCCCTTATTTTTGTCTTCTGTAATGATTATTGATATTGATATA
AATAAATAATAAAGTCAAAGATTTATTTTAATAGCTGATTCTTTGTATTT
TCCAAGGAAAATCTGAAAAATCTGAATTTAACAACAAAAAAACTTGACCA
GTTTCCAACATGGATTTTTGAAAATTTTGATTCTAAATGTTAATTCTTGA
AAATTTTGTTGACCCTTCGAAAATATGTACAGTATCGATTAATAGAGATT
TCTTTAATAGGATAGAGATTTTTGAAAAGCTGATTATTTGTATTTTTAAA
GGAAAAATTTAATTTCTCTTCCCAAAAGATCTGCACGAAATTATTTTGTT
GACAAAGTTTCAGCAAGAAGATTTATCAAAATATTTTTTAAAGGGAAAGA
GAAGGATTGTTTTAAAGGAAAATTTATTTTATCCCTCCAAAATCCACACA
AAATAAAATTATCGGACAAGTTCTATTATATTCTATTTTTTAAACAGTGA
TTCTTGTATTTTGTAAGGAAAATCTATCTTCCCTTTAAAATATATGGTCA
ATTAGGGATTCTATCACGGAACTAGTTCTTTGTACTTTTGAAGGAAAATT
TCCCTGCAAATGTAACTTTTGGAATACCTGGTCTTTCATGGCCCGAAAGG
GATTGCTAAATTTTCATAAAGAATATACACAATACACGTTGCTATAATTC
TACAAAGGCCTACCTTAATCTCATTAATTTTCAGTGTGTCTTGTATTCTC
GCGCAATTCTTTGTATTATTCAAGGAAAATATAATTTTCTCAAAGAAATA
TATATCATGCTTAAAATCAAAAAGTTGTAATCCTACTATAGTCTATTTGA
GATTTTCTTTTAGACAAAAATTAGTTTTTGTATTTCTAAAGGAAAATATG
AAATCCCTTAAGAATACAGCAAAGATTACGGTAGTTTTGCTTTAGCTATG
TTTAAATTTAGATTTTTTAGGGAACTAATTCTTTGTTTCGGTATTTATTC
AATGGTCCAAACTTAGCGAAAATAAAAATTGCATGAAATTTAATGGGGTT
AAGCAGAATGTAAAGAGATGGAAAACAGCTTTTCTGATTACTCAAAGTTC
AACGATCACTTCTATTGAAAATTCTATTGTAAAAACGTTGATTAGGTCAT
TAAATGAAAGTCCAGAAAAGACGGCTCGCCATACAGATCGGACGGTTTCT
ACATGATTTAACGATAAAAATGAAAATTTGTTTTTCCTTTTTTGCCGATT
ACTAGTTCAATTGTTAAGAATAAGGAGCAATATTTTTACCAATGTATAAC
AAAAGAAATTCTTAACGCAATGATATTAAATTGGTTCTTGTAAAACTGTC
AGAAGTCGACTAAAATCAAGATGAAGTTATAATTTTCTCGAGCTCTAACT
TTCCATATTATGGTGGGGTCATGATGCGGTTATATCAGTAGAATCGCTAG
GAAATTCTGAGTAAGAAGATATAGGTACTATATTTCGTATAGGAGAGGTG
TACCCACAATATAAGTCCTAAAAATTTGCGCATAATCAGACTTGAAACAA
AAGAATTTTGTCACAACACGCTAATTATGCAGATTTTTTATAGCGACAAC
AAAAGAAACCTATTTACTCGACATAAACTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCGTTTTTCC
ATTGTTTTCAAAAAGCTGTTTTTCCATCTCTTTACATTCCTCTGGGTTAA
GGTAGATCATCTGCAAATCTGAGAAGTTTTCATTTCTTTTGCCAAGGTTC
AATTCTGATTCTTTTAGAAAACTTTTTCTTTTTCTACCGGGTGCGCCAGA
AAAAAGTATAAAAGTTTGTCGAGATATTGTAGGCTTTAGGATGAGAATTT
TTATTTGATTCTGTTTTCATTGTATAGGGGAAAATCGAACTTAAATCTTG
GTAGGTTCAGTCAATCAAAAGTTATGCTAAAAAGACTTACCCAAAAATTC
AAAATTCATTAGAAACAAGGAACAAAATTTTCTCTCTGTTTATTATCACT
TAAACAGTTAAATAGCCATAAATGAATAAAATTGTCAATTGGTAACTGTA
AAATGGTTGATTTAAGGTCGCTGAAGCTCAAACTTTGCTAAGAAAGTAAA
AATTTCCATAAAACTCGAAAATTCTTGCTAAATAGCTAAAAACTAAAAAA
AACATCCAATTTTCAAGTGAAACTTTCAAAATGGCACCATATCAATACTT
CGACGCCCTGATTTTAGTTTTGAGGCTTAATTTAAATTATTTTAATATCC
AATGAGTCGAGGAAAGCTTAAAGACCAATATTTTACCAAAAAAAATGCTT
AGAAAATGCCATTTTATCGAAATACCTTTGATAATAGTGGTAATTGTACA
TTCAAATTTTGTTATGAAGCATTGATTGACAAGCTTTTTAATATATCCTG
ATTCTTTTAGAAAACTTATTCTTTGTATTTTTAAAGGAAAATCACATCCT
TAAAATATACAAAACGAAACACTGATTTATATTCGATATTTTTCAAATCT
TTCAGTATGCAATCTGCCAGTAAACTGAAGAATATCGATCGAGAAACTGG
TAAAGACATCCAAGTCACTGTAAATGGGATCACTATCACAATCACTGACT
ACAAATTATCTCCACACGCCATGGAAAGTGAAACACCCGAACGTGAATCG
TCGCCTATCGAACCATCTACTGGAGGTGCTTCTTCACAGAGTACAGAAAC
AGAATGAACGACTTCATTGGTTCAAACGTTCGTATTTGAATGGTCTCGTG
TTAGTATTCTTCGGATGAATTTTGTTCGAGGTATAATGTGCAGAATGAAG
CATTTTCTTTCCTCATCATGAGTCTTATGAAAAACAATTTGAAAGAAGAC
TTTGACGACATGCGATAGAAATACCAGAAATGCTATTATTCGCTTTATTG
TTGACATTGTGTCGTTCATATTTTGATTGATCGGAGAGCATTACGAATAA
ATGCTTTTTTCGCTAACAAACTTGTGTTTTTCCAAACTGGCTTTTGAAAC
GGTTTTCATAGAGGTTTTTTTATTCGCAAAGGTCAATGGTTTGTATCAAG
GTCTTGTGAGAATGAGTAACTTTACATAAACCTAATATTGATGGAGTTTT
CAATGAAGTGATTGAGGAATCAAGGAGGAGATGGATATTATTGTCAGTAC
CAATCTTTACCGAAGAATTTAACATTGATTGGCTTTACTCCAAACGCTCT
AAGTAAATTTTATATCCAGTCAACTGTAATTCAGTTAAACTAATTGAAAA
TTTAACTGTCTGTAACTTAATATTGAGAGCTGTAGTCTCTTGAACATTGC
TCACCAAATGAACGTGGCTGGAATGGCCCTTTCGAATGGATTTGAACATG
TCAACAGAAATGCTTTGTACCCAAAAAAAACAATTCTTTTACATTTAGCA
TGATTTTTAATACTTGTAACTTTTGTATCTTTATGTCTAATTATTTGATA
TGAAAAAGAGCCTTTTAAAAAGGTTATATGATAAGCATTCG Coding sequence (CDS) from alignment at scaffold_433:351462..356052- >TCONS_00065208 ID=TCONS_00065208|Name=TCONS_00065208|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_433:351462..356052- (Clytia hemisphaerica)
TATGCAATCTGCCAGTAAACTGAAGAATATCGATCGAGAAACTGGTAAAG
ACATCCAAGTCACTGTAAATGGGATCACTATCACAATCACTGACTACAAA
TTATCTCCACACGCCATGGAAAGTGAAACACCCGAACGTGAATCGTCGCC
TATCGAACCATCTACTGGAGGTGCTTCTTCACAGAGTACAGAAACAGAAT
GAGTCCAATTCTGGTGGAAAACGATCACGGAAAAGGAAACCACGAGTGAC
AGCTACAATGGTGGCTCAACAAATCATATCTTCTTTCCCTCCAATCCCTC
CTATGCCACCGAGCAATAAATATCAAAAATGGGTGATGGAAAATGGGAAT
GCTCAGTATGTACGTACAAAAACAAATCCGAAGCTTTCAAATGTGAAATA
TGCGACACTAGGAAAGGTACCTCTACAAGTATGCAATCTGCCAGTAAACT
GAAGAATATCGATCGAGAAACTGGTAAAGACATCCAAGTCACTGTAAATG
GGATCACTATCACAATCACTGACTACAAATTATCTCCACACGCCATGGAA
AGTGAAACACCCGAACGTGAATCGTCGCCTATCGAACCATCTACTGGAGG
TGCTTCTTCACAGAGTACAGAAACAGAATGAGTCCAATTCTGGTGGAAAA
CGATCACGGAAAAGGAAACCACGAGTGACAGCTACAATGGTGGCTCAACA
AATCATATCTTCTTTCCCTCCAATCCCTCCTATGCCACCGAGCAATAAAT
ATCAAAAATGGGTGATGGAAAATGGGAATGCTCAGTATGTACGTACAAAA
ACAAATCCGAAGCTTTCAAATGTGAAATATGCGACACTAGGAAAGGTACC
TCTACAAGTATGCAATCTGCCAGTAAACTGAAGAATATCGATCGAGAAAC
TGGTAAAGACATCCAAGTCACTGTAAATGGGATCACTATCACAATCACTG
ACTACAAATTATCTCCACACGCCATGGAAAGTGAAACACCCGAACGTGAA
TCGTCGCCTATCGAACCATCTACTGGAGGTGCTTCTTCACAGAGTACAGA
AACAGAATGAGTCCAATTCTGGTGGAAAACGATCACGGAAAAGGAAACCA
CGAGTGACAGCTACAATGGTGGCTCAACAAATCATATCTTCTTTCCCTCC
AATCCCTCCTATGCCACCGAGCAATAAATATCAAAAATGGGTGATGGAAA
ATGGGAATGCTCAGTATGTACGTACAAAAACAAATCCGAAGCTTTCAAAT
GTGAAATATGCGACACTAGGAAAGGTACCTCTACAAGTATGCAATCTGCC
AGTAAACTGAAGAATATCGATCGAGAAACTGGTAAAGACATCCAAGTCAC
TGTAAATGGGATCACTATCACAATCACTGACTACAAATTATCTCCACACG
CCATGGAAAGTGAAACACCCGAACGTGAATCGTCGCCTATCGAACCATCT
ACTGGAGGTGCTTCTTCACAGAGTACAGAAACAGAATGAGTCCAATTCTG
GTGGAAAACGATCACGGAAAAGGAAACCACGAGTGACAGCTACAATGGTG
GCTCAACAAATCATATCTTCTTTCCCTCCAATCCCTCCTATGCCACCGAG
CAATAAATATCAAAAATGGGTGATGGAAAATGGGAATGCTCAGTATGTAC
GTACAAAAACAAATCCGAAGCTTTCAAATGTGAAATATGCGACACTAGGA
AAGGTACCTCTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00065208-exon-scaffold_433-1575043694:355721..356052 | TCONS_00065208-exon-scaffold_433-1575043694:355721..356052 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1575043694:355196..355288 | TCONS_00065208-exon-scaffold_433-1575043694:355196..355288 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1575043694:355106..355138 | TCONS_00065208-exon-scaffold_433-1575043694:355106..355138 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1575043694:351462..352447 | TCONS_00065208-exon-scaffold_433-1575043694:351462..352447 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1510915933:355721..356052 | TCONS_00065208-exon-scaffold_433-1510915933:355721..356052 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1510915933:355196..355288 | TCONS_00065208-exon-scaffold_433-1510915933:355196..355288 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1510915933:355106..355138 | TCONS_00065208-exon-scaffold_433-1510915933:355106..355138 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1510915933:351462..352447 | TCONS_00065208-exon-scaffold_433-1510915933:351462..352447 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1491911889:355721..356052 | TCONS_00065208-exon-scaffold_433-1491911889:355721..356052 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1491911889:355196..355288 | TCONS_00065208-exon-scaffold_433-1491911889:355196..355288 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1491911889:355106..355138 | TCONS_00065208-exon-scaffold_433-1491911889:355106..355138 | Clytia hemisphaerica | exon |
| TCONS_00065208-exon-scaffold_433-1491911889:351462..352447 | TCONS_00065208-exon-scaffold_433-1491911889:351462..352447 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:351462..356052 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065208 vs. Swiss-Prot (Human)
Match: YAF2 (YY1-associated factor 2 OS=Homo sapiens GN=YAF2 PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 1.042e-19 Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 223 KNTMGDGKWECSVCTYKNKSEAFKCEICDTRKGTSTRKPRVTATMVAQQXXXXXXXXXXXXXXNKYQXXXXXXXXXXXXMQSASK-----LKNIDRETGKDIQVTVNGITITITDYK 558
K + +G W+CSVCT++N +EAFKC +CD RKGTSTRKPR + +VAQQ+ F P K + ++ S +++ K LKN+DR + + ++VTV +T+ ITD+K
Sbjct: 15 KPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFK 131
The following BLAST results are available for this feature:
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