TCONS_00050000-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050000-protein
Unique NameTCONS_00050000-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050000-protein ID=TCONS_00050000-protein|Name=TCONS_00050000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MSASEPAPVEDVQGDGRWSSMHQRQVESCRLQKPNVLFVGDSLIQRLEDT
ETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCKPKVVVILCGTNN
HQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQI
NYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFC
VPIMSCVKKFLQEDAKKEKAFNNSIYTFHE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031678XLOC_031678Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050000TCONS_00050000Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013830SGNH hydrolase-type esterase domainPFAMPF13472Lipase_GDSL_2coord: 38..197
e-value: 6.4E-12
score: 46.1
IPR013830SGNH hydrolase-type esterase domainSUPERFAMILY52266SGNH hydrolasecoord: 3..209
NoneNo IPR availableGENE3D3.40.50.1110coord: 2..211
e-value: 1.2E-27
score: 96.3

Blast
[Close]
BLAST of TCONS_00050000-protein vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 9.173e-71
Identity = 96/198 (48.48%), Postives = 135/198 (68.18%), Query Frame = 0 
Query:    3 ASEPAPVEDVQGDGRWSSMHQRQVESCRLQKPNVLFVGDSLIQRLEDTETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCKPKVVVILCGTNNHQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFC 200
            AS+P PV+DVQGDGRW S+H R V   + ++P V+F+GDSL+Q +   E W +   PL+A+N GIGGD T+HVLWRL+NG L+H +PK+VV+  GTNNH H+++++   ++AI   V +     ++V++ LLPRG+  NPLR K  Q+N  +   ++  P  H ++ADPGFV SDG I   DM DYLHL+R GY   C
Sbjct:    8 ASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVC 205
The following BLAST results are available for this feature:
BLAST of TCONS_00050000-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PA1B39.173e-7148.48Platelet-activating factor acetylhydrolase IB subu... [more]
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