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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050000 ID=TCONS_00050000|Name=TCONS_00050000|organism=Clytia hemisphaerica|type=transcript|length=1614bp
tgatttcacCAATCCATAGAAAAAGCATATATATGAAAGAACGATGTCAG
CCTCTGAACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCC
AGTATGcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGT
CCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACTGAGACGT
GGGAAGATACAATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGC
GACCGGACTGAACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACA
TTGTAAACCTAAAGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGC
ATTCATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTG
GCAGATGTACTGAAAGACACTAAGATCGTTCTTATCGCTTTGCTACCACG
TGGAGAAAAAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACG
GTATCGAACAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCT
GACCCTGGGTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGC
TGACTATTTACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCA
TCATGTCGTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAA
GCTTTTAATAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACA
GCTACttcgataaattttttttaagcatGTATAAAATCGTAATTAGGNAA
TAATAGTATTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttc
gataaattttttttaagcatGTATAAAATCGTAATTAGGTTTTTAACAGT
GGCTCTATCTCTAAAGATCTAATCTTTAAGCATTACAGAGTCTGGCAAGG
GAAAGACACTTTAAAAAAACTGTATTTGGACTATGCAgcactgcaatgtc
ttccacggacccaatagctgattggttgaaagtgacgtaaaatcaatcaa
tactTCACTtgtaaccaatcagctgttgggtccgtggaagacattgcaat
ggtgcatatcatgaagaCGGACCAAGCTGCAAATGAGGTATTTTCGAGAT
TACTTCGACGAAATTTAGTAAACACTTTAATTGATACTTTGATGTCCTCG
ATTTCAGCGTTTGCATTTTGTTGACCTCTAACAATCAAATCGATTTGGTA
TTTGATTTTGCAATTTGTTCTGTTTGTTGGGAGCAGATGTATTTAATTCT
GGTAGTCAAATTGTTTTGGCATTTTTATATTAATCAAAACGaattttctt
gaatttattagataaattttcattttactaaataactaaaaatgacaata
taattttttgtaACTCTTCGttaatcattttttatttttacatgcaGTAC
ATTAGAATATTTCTTTAAAGTCTATTTATATCATCGATAATTCATCCATG
AATTTTTAgtatatctttttaattttacgtTATAAATTTCCTTCTAGAAG
ATGAACATTCAATAAATAGTTTGATAACATATATTTCCATTGCTCCAAtt
atttaatgttttct Run BLAST on NCBI protein sequence of TCONS_00050000-protein >TCONS_00050000-protein ID=TCONS_00050000-protein|Name=TCONS_00050000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MSASEPAPVEDVQGDGRWSSMHQRQVESCRLQKPNVLFVGDSLIQRLEDT
ETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCKPKVVVILCGTNN
HQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQI
NYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFC
VPIMSCVKKFLQEDAKKEKAFNNSIYTFHE Run BLAST on NCBI transcript from alignment at scaffold_167:1832248..1838945+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050000 ID=TCONS_00050000|Name=TCONS_00050000|organism=Clytia hemisphaerica|type=transcript|length=6698bp|location=Sequence derived from alignment at scaffold_167:1832248..1838945+ (Clytia hemisphaerica)
tgatttcacCAATCCATAGAAAAAGCATATATATGAAAGAACGATGTCAG
CCTCTGAACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCC
AGTATGGTGAGTtgctttatttttttaagaaaccaatattttattttagt
ttgaacGTTTCTCTTTTTGATGAACCCAATGTTTTAAGTCATGGTCCTCT
TCAAACACTCACTTTATTTCCTAAGGGGCTGCGAAGCCCAAGAATTGTAg
tgatgattttttttaccaaaaattcaattttgatcTATTTGAGAGCCGTT
GATTCGATAGCGTTTTTATAAAGCACTTTATATTGTTTTGCATTCTATTC
ATTGGGTCGGGATTGattcattttcaataaaactcaAATAGAAGAAAACT
TGAGATTGacgaaaaataacaaagaaGTTTTTAtatatagtagggggcca
agcctggggttccgtgacatcttttctatgacctagccatttttggtcta
ttccaaagaacagtatattacaaaatatttttgagagggagacgcggatt
aggcccgggaaaattttttatgaccaaaatagtgacgccatatgcaaaac
tgcaagggaaaataaggggtagagaaatagcttattttttaaagtcaaaa
taaacgaaaattatttgtaccatctgatagagcatgaaactccgagcaaa
aaattatattacaacaactctctgactaaaacacacaatggcgtatggcg
tcactatttttgtCATGAAAAGTTTCCCGGGCCTTTATttgcgtcctccc
tctcaaaaatatcttgtaatatactgttcttttgaatagactaaaaatgg
ctaggtcatagaaaagatgtcacggaacccaaggcttggccccctactaa
taaacatttaaaaaaaatggttgTTTGAGGCATATTAACATGTTTcatct
ttaaatttttagcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCC
AAATGTCCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACTG
AGGTTTCCTTTGTCTGCCCAATACTGTATTGTTATtaccatagtgtcctc
cagggtttgttccccccactaaattcttgatttttttaaatctccctcct
ctttttttttgcccctacagtatatggcccccaaaacggcgatcaaattt
gaaatttctctcaaatctagaggaaaagagattttacaaaaatttttgct
gtataaaaacctttaacatctctactttatttcctggaagttctttttca
aaattttcaatttcaacaatatttttcaatcgctttaagataggtagctt
ttttctaatggcccccaaaacggaggtttgaaattttagcgatttctcga
gttatctttaagatatgaatacagaattttgaccatagttttgaaatatg
atttagagggttttgggcataaatttatttgataaaatttttacagtata
cccctggttgtcaaaatgcaggtttggggcccccaaaacggaggggtagt
taaaatcaaattattaaggccagtggtaatagggggaaaaacgatgaaca
tatttgtgttttcccttaaattgaCGActcgatggatgtaaaatttatga
ttttaatgaaatatttgaagattttcgatattgcaaagtccaaactgaaa
atttagaaattttcaaaatgacaattttgatttaacaacgtctcaatcaa
gtttttgaaaacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaatagttccattca
tgtatggaataagctgtgaaaattttagaaaaaaagctcaactgaaactg
aaaatattaagctttaaagatatttttctcctatattttgcaaaaaattg
acagaatttgctgtttttgctgattcagcgaaaaattttatatataatgt
taattttttgttataaactattaactcaaggtaataggaatagaattcca
agatcttttctttttctcatatttagaattttcggttttgtcaaccacgc
atgctggaaaaactggaaaacctggaaaaactggaaaaatggcctttttc
tgaaaactagctggaaaaactggaaatagGTACATTTTCCAAACAGGaaa
gctggaaaaactggaaaagcttttttgaaatttcaatttcaactttATGT
CAGGAATTGGTTAGAATTATTATGTGATTATACatatatataattttcat
aAGATGTTATCTAGTATGagtttagccattttcagtttaGTTCATCAGAC
ATTCTTTTGTCAAAGCATAGATCTCTATgaccgatttgaaagaaatgtct
tttgaaaatctagaagtaccagtggataccccttaaaacctacaaagctG
CACTATGGGCTCTCTTAGCCAccaaattcaattcaatattgTTTAGTTCA
CTattttacaacctcttataaatgtactttcataaaatacctaatttcgA
GAATTTCAATTATCgcaaagtgttataaaattcaaagttatctaaatttt
atcaagaatcacatcaaaaaataagtggccccccactttttggtagacca
tgtcatacgtttttaagagttactattttaagctggtttgagaccaaatc
aaaccacatAAACTATTATTCTTCCCAattagatatcgttttaaggtgtt
ttgagggtgtaaaatgtgaaaaatcttcttcgtcgcccaaccatggtggg
cgacattctttttccaaaatgttggctccctcactcaaaatggctcgccg
gggcccatacgatggctagccacgatggctaaaaAGATCTATAGAATATC
TACAAGATCTATAAGAATatgaaaatataattcttcTAAGCCATTTACTT
AATCGTGGTTAAAGATTGCAATGcattgttatcttttttctcatttcttt
cataaaatgaaaTACCACAGACAGCGTACTTTCAACACATAAAGTTTCAG
CCTAAAATTCCACCTACGTTTTCTGATAGAGGGtacctttatttttttgt
aggtTTTGAGGGGTATCCGCTGGTAATGATTTTGCACTCGCTTATAGCTG
GAAAAAAGTACAGATTTTTGGGTTAAGGCTGGAAAAAGGTACATTTTCCA
GCTGAAAATACCTGGAAAAAAGGATGTTTTTGACCCAAAAAGCTGGattt
ttcatctaaaataaGTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaatccgtctcaaaccagcaaaaacatgc
tcattcttaagtataaccatcattctttcaaaataaacaaaaatcgttta
attctgataaatctgcAAGTCAGAAtctttattttaataaaaaccTCCGt
cttgggggccgtctccgttttgggggccatatactgtatgacttttcagt
tttttagtttcccccctcttttgctttacccccagaaaattctgaaaata
tcagttccccccatatacccatataaacttctcaaatttcaacctgacac
aaacggAACGAAAATGGGTTCCTACTGTAGATGCTAAATGCAACATATTC
AATAAACAGAAAAACTATAGGAACAATAGGAATTTTCAAATCAGTTCTTA
GCAGAATATTTTTATCAGAAAATAACAATTTCTTTGTTTATTCAGACGTG
GGAAGATACAATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGCG
ACCGGACTGAACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACAT
TGTAAACCTAAAGTATTTTTATTATGGTTTTTCAACAATATTCACGACTC
TCTGATTGACTTTATTACACTTATGTAtgttttattgacaaaatttcTTA
CTCCTAAAAACTAttacttttattcttttatcctttttATAATCATTTGT
CACAAAAAGTTATTGCAGCGAATTTTATAGCCTCTAGAAGGAAGCTCGTT
GGGGTCGGAAACTTTTTTCCACCTCAGCGCACCGTGTTCTAGAGGCTATG
ACTTTTGACACAATagttttaagtaaaaaaaaatatataaatttaatCTT
GTCAcgttatattttgttttctccAGGTCGTTGTTATTTTGTGTGGTACA
AATAATCACCAGCATTCATCTGATGAAATTGTGGATGCTCTTGAAGCAAT
CTGTTGGAGTGTGGCAGATGTACTGAAAGACACTAAGATCGTTCTTATCG
TAAGAATCATAACGTTCTCCTTTAAAATACTGAAATTATTATCTTAACTG
TATATTCGAACTTGGTAATTTGAAtctctttgtaattcgaacaaacaAGA
TTCCCTGTTCGAATTCGAATCCACGAAAGTCGACTTTAAAAGACTAACCC
TTTGACGGAAATCCCTCACAATCCCATGTTGCTCTATTTTTAAGTCTGCC
AGTGGCTTTGACGGATATGGCTCAGATAATTGCACTGAGTCGTAAAAATT
TATGATTTGTTGGTCCAGGATACAATAGATATGATGAAACTTTCACCGCG
CTGAATCTAaaaatagattttatttttgacataatcattactctcgatgt
gtttgtacgagttccaatcccatcaacctttgcgttaatctcttttgtAC
GTTAATTACATAATTTGACAAAGGATATTtaacaacttgcacgtatcttt
gattgagccgcattgaattgtgggattgcaactcgtacaaatgtctaaaa
aagtgaaaagtaataattatgacgtatatgttgcggagcgctattataat
acaccttttcgaccgtagccgccaattaccgcgcgggcatttttttgtcc
gcttcaTCCCAccaaaaccgtcccagtccttttttcgcacctatagacaa
tagaaaaatgtgtcaaaaaagggttggatcgagtttaaggggataattaa
ataattaagtggcacgcgcctgaccgcgcgactacggtcgaaaacgATAA
TTGATATATCTTTTCTGAAGGCTTTGCTACCACGTGGAGAAAAAGACAAT
CCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGAACAGATTAT
ATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTGGGTTTGTTC
GTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTATTTACATTTA
ACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCGTGTGTGAA
GAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAATAATAGTA
TTTATACTTTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaatt
ttttttaagcatGTATAAAATCGTAATTAGGNAATAATAGTATTTATACT
TTCCATGAGTGAAGATTTGTTGAACAGCTACttcgataaattttttttaa
gcatGTATAAAATCGTAATTAGGTTTTTAACAGTGGCTCTATCTCTAAAG
ATCTAATCTTTAAGCATTACAGAGTCTGGCAAGGGAAAGACACTTTAAAA
AAACTGTATTTGGACTATGCAgcactgcaatgtcttccacggacccaata
gctgattggttgaaagtgacgtaaaatcaatcaatactTCACTtgtaacc
aatcagctgttgggtccgtggaagacattgcaatggtgcatatcatgaag
aCGGACCAAGCTGCAAATGAGGTATTTTCGAGATTACTTCGACGAAATTT
AGTAAACACTTTAATTGATACTTTGATGTCCTCGATTTCAGCGTTTGCAT
TTTGTTGACCTCTAACAATCAAATCGATTTGGTATTTGATTTTGCAATTT
GTTCTGTTTGTTGGGAGCAGATGTATTTAATTCTGGTAGTCAAATTGTTT
TGGCATTTTTATATTAATCAAAACGaattttcttgaatttattagataaa
ttttcattttactaaataactaaaaatgacaatataattttttgtaACTC
TTCGttaatcattttttatttttacatgcaGTACATTAGAATATTTCTTT
AAAGTCTATTTATATCATCGATAATTCATCCATGAATTTTTAgtatatct
ttttaattttacgtTATAAATTTCCTTCTAGAAGATGAACATTCAATAAA
TAGTTTGATAACATATATTTCCATTGCTCCAAttatttaatgttttct Coding sequence (CDS) from alignment at scaffold_167:1832248..1838945+ >TCONS_00050000 ID=TCONS_00050000|Name=TCONS_00050000|organism=Clytia hemisphaerica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_167:1832248..1838945+ (Clytia hemisphaerica)
ATGTCAGCCTCTGAACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACG
GTGGTCCAGTATGcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGC
CAAATGTCCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACT
GAGACGTGGGAAGATACAATTAAACCATTGAATGCTGTGAACGCCGGGAT
AGGTGGCGACCGGACTGAACATGTTTTATGGCGACTACAAAATGGCCTTC
TTCAACATTGTAAACCTAAAGTCGTTGTTATTTTGTGTGGTACAAATAAT
CACCAGCATTCATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTG
GAGTGTGGCAGATGTACTGAAAGACACTAAGATCGTTCTTATCGCTTTGC
TACCACGTGGAGAAAAAGACAATCCATTGCGTAATAAAATCTATCAAATC
AATTACGGTATCGAACAGATTATATCAACCATTCCGAACACTCATTTAAT
CAATGCTGACCCTGGGTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAG
ACATGGCTGACTATTTACATTTAACACGCCGCGGGTATAAGAAGTTTTGT
GTCCCCATCATGTCGTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAA
GGAAAAAGCTTTTAATAATAGTATTTATACTTTCCATGAGTGAATGTCAG
CCTCTGAACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCC
AGTATGcaTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGT
CCTGTTTGTTGGAGACTCACTTATTCAACGTCTAGAAGATACTGAGACGT
GGGAAGATACAATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGC
GACCGGACTGAACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACA
TTGTAAACCTAAAGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGC
ATTCATCTGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTG
GCAGATGTACTGAAAGACACTAAGATCGTTCTTATCGCTTTGCTACCACG
TGGAGAAAAAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACG
GTATCGAACAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCT
GACCCTGGGTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGC
TGACTATTTACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCA
TCATGTCGTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAA
GCTTTTAATAATAGTATTTATACTTTCCATGAGTGAATGTCAGCCTCTGA
ACCAGCCCCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCCAGTATGc
aTCAAAGGCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTT
GTTGGAGACTCACTTATTCAACGTCTAGAAGATACTGAGACGTGGGAAGA
TACAATTAAACCATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGA
CTGAACATGTTTTATGGCGACTACAAAATGGCCTTCTTCAACATTGTAAA
CCTAAAGTCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTCATC
TGATGAAATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAGATG
TACTGAAAGACACTAAGATCGTTCTTATCGCTTTGCTACCACGTGGAGAA
AAAGACAATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGA
ACAGATTATATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTG
GGTTTGTTCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTAT
TTACATTTAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTC
GTGTGTGAAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTA
ATAATAGTATTTATACTTTCCATGAGTGAATGTCAGCCTCTGAACCAGCC
CCCGTAGAAGATGTTCAAGGTGATGGACGGTGGTCCAGTATGcaTCAAAG
GCAAGTGGAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTGGAG
ACTCACTTATTCAACGTCTAGAAGATACTGAGACGTGGGAAGATACAATT
AAACCATTGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGAACA
TGTTTTATGGCGACTACAAAATGGCCTTCTTCAACATTGTAAACCTAAAG
TCGTTGTTATTTTGTGTGGTACAAATAATCACCAGCATTCATCTGATGAA
ATTGTGGATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAGATGTACTGAA
AGACACTAAGATCGTTCTTATCGCTTTGCTACCACGTGGAGAAAAAGACA
ATCCATTGCGTAATAAAATCTATCAAATCAATTACGGTATCGAACAGATT
ATATCAACCATTCCGAACACTCATTTAATCAATGCTGACCCTGGGTTTGT
TCGTTCAGATGGTGTCATCTTTCCTGAAGACATGGCTGACTATTTACATT
TAACACGCCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCGTGTGTG
AAGAAGTTTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAATAATAG
TATTTATACTTTCCATGAGTGAATGTCAGCCTCTGAACCAGCCCCCGTAG
AAGATGTTCAAGGTGATGGACGGTGGTCCAGTATGcaTCAAAGGCAAGTG
GAAAGCTGCAGACTGCAAAAGCCAAATGTCCTGTTTGTTGGAGACTCACT
TATTCAACGTCTAGAAGATACTGAGACGTGGGAAGATACAATTAAACCAT
TGAATGCTGTGAACGCCGGGATAGGTGGCGACCGGACTGAACATGTTTTA
TGGCGACTACAAAATGGCCTTCTTCAACATTGTAAACCTAAAGTCGTTGT
TATTTTGTGTGGTACAAATAATCACCAGCATTCATCTGATGAAATTGTGG
ATGCTCTTGAAGCAATCTGTTGGAGTGTGGCAGATGTACTGAAAGACACT
AAGATCGTTCTTATCGCTTTGCTACCACGTGGAGAAAAAGACAATCCATT
GCGTAATAAAATCTATCAAATCAATTACGGTATCGAACAGATTATATCAA
CCATTCCGAACACTCATTTAATCAATGCTGACCCTGGGTTTGTTCGTTCA
GATGGTGTCATCTTTCCTGAAGACATGGCTGACTATTTACATTTAACACG
CCGCGGGTATAAGAAGTTTTGTGTCCCCATCATGTCGTGTGTGAAGAAGT
TTCTGCAAGAAGATGCGAAAAAGGAAAAAGCTTTTAATAATAGTATTTAT
ACTTTCCATGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050000-exon-scaffold_167-1491911889:1832248..1832353 | TCONS_00050000-exon-scaffold_167-1491911889:1832248..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1510915933:1832248..1832353 | TCONS_00050000-exon-scaffold_167-1510915933:1832248..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1575043694:1832248..1832353 | TCONS_00050000-exon-scaffold_167-1575043694:1832248..1832353 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1491911889:1833210..1833299 | TCONS_00050000-exon-scaffold_167-1491911889:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1510915933:1833210..1833299 | TCONS_00050000-exon-scaffold_167-1510915933:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1575043694:1833210..1833299 | TCONS_00050000-exon-scaffold_167-1575043694:1833210..1833299 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1491911889:1836443..1836559 | TCONS_00050000-exon-scaffold_167-1491911889:1836443..1836559 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1510915933:1836443..1836559 | TCONS_00050000-exon-scaffold_167-1510915933:1836443..1836559 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1575043694:1836443..1836559 | TCONS_00050000-exon-scaffold_167-1575043694:1836443..1836559 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1491911889:1836874..1836996 | TCONS_00050000-exon-scaffold_167-1491911889:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1510915933:1836874..1836996 | TCONS_00050000-exon-scaffold_167-1510915933:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1575043694:1836874..1836996 | TCONS_00050000-exon-scaffold_167-1575043694:1836874..1836996 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1491911889:1837768..1838945 | TCONS_00050000-exon-scaffold_167-1491911889:1837768..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1510915933:1837768..1838945 | TCONS_00050000-exon-scaffold_167-1510915933:1837768..1838945 | Clytia hemisphaerica | exon |
| TCONS_00050000-exon-scaffold_167-1575043694:1837768..1838945 | TCONS_00050000-exon-scaffold_167-1575043694:1837768..1838945 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1832248..1838945 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
BLAST of TCONS_00050000 vs. Swiss-Prot (Human)
Match: PA1B3 (Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 2.100e-65 Identity = 96/198 (48.48%), Postives = 135/198 (68.18%), Query Frame = 2
Query: 50 ASEPAPVEDVQGDGRWSSMHQRQVESCRLQKPNVLFVGDSLIQRLEDTETWEDTIKPLNAVNAGIGGDRTEHVLWRLQNGLLQHCKPKVVVILCGTNNHQHSSDEIVDALEAICWSVADVLKDTKIVLIALLPRGEKDNPLRNKIYQINYGIEQIISTIPNTHLINADPGFVRSDGVIFPEDMADYLHLTRRGYKKFC 643
AS+P PV+DVQGDGRW S+H R V + ++P V+F+GDSL+Q + E W + PL+A+N GIGGD T+HVLWRL+NG L+H +PK+VV+ GTNNH H+++++ ++AI V + ++V++ LLPRG+ NPLR K Q+N + ++ P H ++ADPGFV SDG I DM DYLHL+R GY C
Sbjct: 8 ASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVC 205
The following BLAST results are available for this feature:
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