TCONS_00049247-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049247-protein
Unique Name	TCONS_00049247-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	472

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049247-protein ID=TCONS_00049247-protein|Name=TCONS_00049247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MASYASQIVFMFIGIFCSVIIQKWDQKYLFDALVWLQNYYMPNSTSVGTS
IALLTLVEQKKKSFSVAVLPTKEVATETDWILNNEVQSILNKAIMYKNQG
KTEKALKLLKQCKALNPKHPDVLNFYGEGIESKDVITAEHHYALALVIQP
GHLKATANRRRCLPRVKELDLKMLRRIEQKREALMKIPEGNSALKRAKLE
SYYKHIYHSNGIEGNTMTLSMTRSILETKMAVGGKSVLEHNEVLGMDAAL
QYINITLLNEIGPVTIQHMLQIHKRVLGYAQPLDAGLFRDSQVYVGEHIP
PSPVDVHQYMEAFQRWLLSTDVEHLHPIELAALAHYKLVYIHPFTDGNGR
TSRLLMNLFLMRAGYPPVIIRKEDRFKYYQHLQTANIGDVRPFIRFVATC
TEETLDEYLSSVTVGKLQMQDPSDSAKKRTDIIDYKEECFNPFHQASSLT
DPEDLELKGRCEEIMKSENYEE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031266	XLOC_031266	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049247	TCONS_00049247	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR003812	Fido
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 86..119 e-value: 0.0076 score: 25.5
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 86..119 score: 8.378
IPR003812	Fido domain	PFAM	PF02661	Fic	coord: 263..360 e-value: 2.0E-25 score: 89.4
IPR003812	Fido domain	GENE3D	1.10.3290.10		coord: 171..426 e-value: 2.0E-69 score: 233.3
IPR003812	Fido domain	PROSITE	PS51459	FIDO	coord: 264..399 score: 25.558
IPR003812	Fido domain	SUPERFAMILY	140931	Fic-like	coord: 239..411
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 56..170 e-value: 1.8E-7 score: 31.0
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 85..166
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 86..119 score: 9.362

Blast

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BLAST of TCONS_00049247-protein vs. Swiss-Prot (Human)
Match: FICD (Adenosine monophosphate-protein transferase FICD OS=Homo sapiens GN=FICD PE=1 SV=2)

HSP 1 Score: 375.555 bits (963), Expect = 1.170e-126
Identity = 191/349 (54.73%), Postives = 240/349 (68.77%), Query Frame = 0

Query:   85 EVQSILNKAIMYKNQGKTEKALKLLKQCKALNPKHPDVLNFYG-EGIESKDVITAEHHYALALVIQPGHLKATANRRRCLPRVKELDLKMLRRIEQKREALMKIPEGNSALKRAKLESYYKHIYHSNGIEGNTMTLSMTRSILETKMAVGGKSVLEHNEVLGMDAALQYINITLLNEIGPVTIQHMLQIHKRVLGYAQPLDAGLFRDSQVYVGEHIPPSPVDVHQYMEAFQRWLLSTDVEHLHPIELAALAHYKLVYIHPFTDGNGRTSRLLMNLFLMRAGYPPVIIRKEDRFKYYQHLQTANIGDVRPFIRFVATCTEETLDEYLSSVTVGKLQMQD--PSDSAKKRT 430
            E ++ LN+A+  K QGK EKA KL      ++P   D L  +G    E KD+I A++ Y  AL I P H KA  NR R LP V+E+D +    I+ K + +M IP+GNSAL+R   E+YY HIYH+  IEGNT+TLS  R ILET+ AV GKS+ E NEV+GM AA++YIN TL++ IG VTI  +L+IH+RVLGY  P++AG FR +QV VG HIPP P DV + M+ F +WL S +  +LHP+E AALAHYKLVYIHPF DGNGRTSRLLMNL LM+AGYPP+ IRKE R  YY  L+ AN GDVRPFIRF+A CTE TLD  L + T   + + +  P+ S  K T
Sbjct:  105 EARAALNQALEMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNRDRTLPLVEEIDQRYFSIIDSKVKKVMSIPKGNSALRRVMEETYYHHIYHTVAIEGNTLTLSEIRHILETRYAVPGKSLEEQNEVIGMHAAMKYINTTLVSRIGSVTISDVLEIHRRVLGYVDPVEAGRFRTTQVLVGHHIPPHPQDVEKQMQEFVQWLNSEEAMNLHPVEFAALAHYKLVYIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAANEGDVRPFIRFIAKCTETTLDTLLFATTEYSVALPEAQPNHSGFKET 453

The following BLAST results are available for this feature:

BLAST of TCONS_00049247-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049247-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FICD	1.170e-126	54.73	Adenosine monophosphate-protein transferase FICD O...	[more]

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TCONS_00049247-protein (polypeptide) - C. hemisphaerica