TCONS_00002700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002700
Unique NameTCONS_00002700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=transcript|length=767bp
CCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTG
AAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAA
AATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTG
CAAGATTAATGAAATCAACGAATGCAAACTTAATTTACACACTTGTCATG
CGAATGCGACTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAAA
GATGGGTTCATTGGGAATGGAACGATTTGTGAAGattttgatgaatgcAA
AGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACCTTATTG
GATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAAAACACG
TGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATGTCATGC
AAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCTGCCAAA
AGGGATATTCAGGTGATGGATACCAATGTGGAGATCTCAATGAATGCAGC
AACAACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACTGA
AgGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAAtggaagaa
aatgttttgatttcaatgaatgttattctCCAACAACTCATAATTGTCAT
CAACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAG
GAATGGCTTTATAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00002700-protein

>TCONS_00002700-protein ID=TCONS_00002700-protein|Name=TCONS_00002700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
HDFHFHLCILDEFICGENYTKCHEKALCILDDENSSCQCKQGYIGNGESC
KINEINECKLNLHTCHANATCIDTHEHYQCSCKDGFIGNGTICEDFDECK
AEVAHCPTNSTCVNLIGSFDCFCNSGYQKCENTCKDVDECSDPDLNRCHA
KAKCENTIGSYMCFCQKGYSGDGYQCGDLNECSNNSMNNCHQNALCLNTE
GSYQCYCQKGFYGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCR
NGFIK
Run BLAST on NCBI

transcript from alignment at sc0000021:592892..598387-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=transcript|length=5496bp|location=Sequence derived from alignment at sc0000021:592892..598387- (Clytia hemisphaerica)
CCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTG
AAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAA
AATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTG
CAAGATTAATGGCAAGTCGAGCATGTGTTTTGGAATGTATTTCTTTTCAC
GAAATAGACGCCTGGTTTGAACCTCTTTTAACAATTTGGCCCTAAAATTA
AGCTTGACAATTTTTGACAATTTTACCGATTTTTTATTTAATTTATTGAC
AGCTTTTGGAACCAGGCCAAACACTTTAAATTTTCTTTAAACCTTAAAGT
TCAGGCCCGGTGGAACAGCCGTAAAGGTGGGGAGGCTGAAGGCTCAAAAT
GAAATGAAATTCGCTAGAAATTTGAGAAAGAAACCTCATTTGCTCAAAAG
TTGGGAGGCTGAAGTCTCCCCAGTCTCCCCGCTTCCAACGGGCCTGAAAT
TAACGAAATTTGACGGGGATAATAGCCACAATTTTCTATTTCGTTCAACA
GCAAGATTATCGATTATATAAGACAATTGATTTCATTTTTTATTCCTCTC
AGAAATCAACGAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGA
CTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTC
ATTGGGAATGGAACGATTTGTGAAGGTAAGTGTGGATAGTTCATGAGTTT
CACACGTTTTCGTCTTTCTTAGAATTTATAAATGGTGTGGGGACACGTTC
GAGCGAATGTATGTCTTCCTTCTGCGCGGACCTGCCTGAATGATAGAACG
GTGCCCAATAGTAAAACTTCAAACTAATTCGCTAGAGGACAGAATCAAGT
AATGCAGGACCAATTTAGGAGGTTCTTGGATCACTCGTTGACTTTTTGGC
TCAAAATCTTGCTGGAAAGACTCACTTTTGATTTTTTTTGCTTGACCATG
AAACCCAATCCAATTTCTACGAGTTAGACAAAAAATGACGATTTCTAACT
CAAACTGGACATTACAGGAGGGCTTCGTCCTCCTACATAGCCCATGTCTA
GTATACTCGTAATTTGTACTTAAAGGGTTAAAAGTTCACATTATTTCGGA
CACAGTTAGCTATCAAACCTTTATACTTTTTCTGGGTACACCCAGTATGT
GAGTGATTTAAGTACATCTGACACTCTTTTATTCGGTTTTCAAGGGAATC
GGATTTTCATCGAACAAGGGATATGACTGCATCGAATAGTAGAACATCGT
TCATGAGAGTTTCTAGTTGACGTCGACTTTCAATATTATTGCATAGTGGA
GCGTGTCGAATAGTAGAACGCCGAATAAAAGAGCGTCAACTGTATTACAC
CCCTGTGTCACAGACCCACTGGGGAATTGAGTTTGATTTCTTCCCCACTC
GAAATCCGATGTTTTAAAAATTGCACTCCAAAACCATCCCCACTGGATTT
TTTAACTTTGGAACAATATAATTTCTATCCCCATCGGGATTTCAATAGGA
AGTTTTATCCCCACTGAGGAAAAAAGTTCCACCGGGGCTGTGAGACAGGG
GTGTTGTATTGCTAGTTTTTCTTTGATCATTTGACCATAGATTTTGATGA
ATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACC
TTATTGGATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAA
AACACGTGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATG
TCATGCAAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCT
GCCAAAAGGGATATTCAGGTATTGGGCAGAACATGTCTTTTTATAAGAAC
AATTGTATAAGAATAAACAGCTTATATTAAGGACAAATCTAGAGCATTTT
TAGCCTTTTGGACTCTAAAACACCACAATTTTTTAGAAAATCGTAAAAAA
TGATCACAAAATACTTAAAACGTTTTAAGAGCATATTTAGGCTTAACCTT
TCCAGCGCGCAACATTTTTATATCTTCAGCCCGTCTGCGCGCAACGTTTT
TTGATGAAAATACAATTTTCACGATAACCGTTATAACTTTTTGAAAAATT
AACTTCAGAAAAAAACCCTTATATTTTTGGAAAGCCCTACCTTTCCCCTT
TCTAAATATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAAATTATAGAGAACTGAAAAATTGATAAAAACACTTACTTTT
TTCTTTAGAAGGTTTCTTTATAGTTAGGTAATACAATTCCATACTTTTGA
AAAGCCAAATTAAACTCTAAAACACTTTTATAAACCCTTACTTTCATAGC
TAACTTTCTGCCTCCTCCAAAATCACGCAACACAGCTTGGTCTACCATTT
CTATTTTTGAAAAATGTTGCGTCATACCAAAACAAACCCCGATTGTTTCT
TATCGGAAATTTCACGCTGATTCCGATTTTTTAATCGGTTTTACCGTACC
TCTGACGGTTGGGGCGTAATCCGACCAAATATAAAGGTCACCTTAAAAAC
GTATCAGATACGTCTTTCGGAACGTATGGCGAACGTATCAGATACGTCTT
TCGGAACGTATGGCGAACGTATCAGATACGTCTTTCGGGGCGGAAAGGTT
AAAACTAAAAAAGATAAGAAAATCTGAAGGTTTCGAAAACCTTTGACGTT
CTTATAAAAAAAATTGTAATGCTCAATGAACAATGGTAACCCCCCCCAGA
TACCAAGGTGAAGTTATAAGCTTACTTTTACGAAAGATTAGCCTATACAT
CACAGCTTTTTTTCTTACACAGTAACGCACGTCTGTTCCACTTTACGATT
TTTTCGAATGTTTGGAGCCCAGGTTTTCGTACCGTGAGTATCACAGCTCG
AATAAATTCGATAATTAATATTTTCTCTTTGAAAACTTGACCTCTGATAC
TCAGGGTAAGGTTTTCGGGCTCTGAATATTCGATTGTTTGACGTCACTTT
ATGCTTTTTAAGTCCTCATAGTAGCGAAAAAATCGAATATGAATCAAAAC
ACCTGAAGACAGGCTTTCGAAAAGACTTATAGTGTAACTCACTCAAAAAA
CGGAATAAAAAATCCTTTTGATAACGTAATCGTGGCGTAATCGCTATCCA
ATGACGTGATTTAGTCAATTCTGTAAACCGATCCAACGTTATCTTTTGCA
CCCATATTAGCGAGGAGCATGGGAGAAAGAATAACATGATTATTTGGTAA
CACTATTTAGTTAGAAAATTTGGTAGAAATTCCGTCCCCGGTGGGGAAAA
TACCCTAGAATTTTAGCCCCGCTGAGAAAATTTCTTTAATTTCACCCCCA
TTTGAAATTAAATGTTGCACTCCAAAACCGTCCTGCTGGATTTTTTAACC
TTGGTACAATAGACTTTTCATCCCGATTGGGATTTCAGTAAGAAATCTTT
ATCTCCGCTTGCGGGAAATAGATCCACCGGGGCTTGTGAGACAGGGTGTA
TTTACCCTTCACTTAGAATCACTGATTGAATCTAGCGCTTTCTTTGATTT
CACGCACATTTTCGATGGAAAATAAGTGACCTCATTTTCCATTTAAAAGT
TTCATCTCTAGCTCCTTCAGGGCTTTGAACTTAATAGACAACACTTTATA
CTCAGCTAGCAGATGTTGTATCATTTTAAGAATGAAGAGGATTGATTAGT
AACACCATGCAGTTTAAAACTGGAAGGGGTAGATTGGAATCTCCAACCAT
TCCCAAGCAAAAAAAGCGAAGCCTTAAGATTTATTCAGCACTTAGAATAG
TGGATTGAATCTAGCGCTTTCTTTGATTTCACACACGTTTCCGATGGTAA
ATAAGTGACCTCATTTTCCATTTAAAAGTTTCATCTCTAGCTCCTTCAGG
GCTTTGAACTTAATAGACAACACTTTATACTCAGCTAGCAGATATTGTAT
CATTTTCTGTGCGAAAAGTAACGGGATTAAAGTATGCCACAACGAATTAG
ACCTGATATCTACAAAAATTTCTAAATTCATTGACGTACTAAGCTATGTT
ATACGCGAAATACACTCTTGTATATAAAGTACAACGAACTGTATTTGTTT
ATTTTCTCCTTACTAGGTGATGGATATCAATGCGCATTTAGGATAGGAAA
TAAGTGACCATCCAAGAGTTTTATCCCTAGCTCCTTTGGGCTTTAATTAT
GTCACAACAAACTGTATCGGGTTTTCTCCTTTCTAGGTGATGGATACCAA
TGTGGAGATCTCAATGAATGCAGCAACAACTCGATGAATAATTGTCATCA
AAATGCTCTTTGTTTGAATACTGAAGGTAACACCCCTGTCTCACAGCCCT
GGTGGAATTTTTTCCAGAGTTGGGATAAAAATTCCTCTTGAAATCCCGAT
GGGGATAGAAATTCTATTGTTCCAAAATCCAGTGGGGGTGGTGTTGGAGT
GCATATTTTAAACATTGAATTTTGAGTGGGAATGAAATCAAAGTCAATTT
CTCAGTGTGACTAAATTTCCAGGGTATTTTCCCACCGGGTGCAAAATATT
TGCCAAATTTTCCAGTGTGGCTGGGGGTACCAGCGGGTATTTCTGTCTAC
CGTGAGTGGTGAGTATCACAATGTATAAATCTAGACTGTTATAGCGAATC
GAAGTAAAGTTTAGTGCCTATGACAATAAATGATACAGAAATCTCGTCAA
AGTTCAGAAAAAAGGTTTTCAGAGCATTAATTTTAGAATCTCTTTTATTT
CTATTTCCCGCAATAAGTAGTAGAGTGCAAACTGTTCTTGCCCTCGCTTT
GATTGGACGATCTCTATCGGATAGTACTTTCATCGTACAAGGGTGTTAAC
AAAATATTAGTAATTTTTAGGTTTTGCTTCTTCGATCCTAGTTCCAAGCG
TTAAAGATTCAAATAATAACTTTTTCTTCAGGCTCCTATCAATGTTATTG
TCAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTTTGATTTCAATGAAT
GTTATTCTCCAACAACTCATAATTGTCATCAACATTCTAATTGTGTCAAC
AACATCGGTTCTTATACATGCCAATGTAGGAATGGCTTTATAAAAA

Coding sequence (CDS) from alignment at sc0000021:592892..598387-

>TCONS_00002700 ID=TCONS_00002700|Name=TCONS_00002700|organism=Clytia hemisphaerica|type=CDS|length=3825bp|location=Sequence derived from alignment at sc0000021:592892..598387- (Clytia hemisphaerica)
GCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAATGGAAGAAAA
TGTTTTGATTTCAATGAATGTTATTCTCCAACAACTCATAATTGTCATCA
ACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAGGA
ATGGCTTTATAAAAGTGATGGATACCAATGTGGAGATCTCAATGAATGCA
GCAACAACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACT
GAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTC
GACATGTGTCAACCTTATTGGATCATTCGATTGTTTTTGCAACTCTGGTT
ACCAGAAGTGTGAAAACACGTGCAAAGATGTCGATGAATGTTCGGACCCA
GACCTCAATAGATGTCATGCAAAGGCGAAGTGTGAAAACACTATTGGATC
TTACATGTGTTTCTGCCAAAAGGGATATTCAGAAATCAACGAATGCAAAC
TTAATTTACACACTTGTCATGCGAATGCGACTTGTATCGATACTCATGAA
CATTATCAATGTTCTTGCAAAGATGGGTTCATTGGGAATGGAACGATTTG
TGAAGCACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGT
GGTGAAAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGA
CGAAAATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAA
GTTGCAAGATTAATGGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTAC
GGGAATGGAAGAAAATGTTTTGATTTCAATGAATGTTATTCTCCAACAAC
TCATAATTGTCATCAACATTCTAATTGTGTCAACAACATCGGTTCTTATA
CATGCCAATGTAGGAATGGCTTTATAAAAGTGATGGATACCAATGTGGAG
ATCTCAATGAATGCAGCAACAACTCGATGAATAATTGTCATCAAAATGCT
CTTTGTTTGAATACTGAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCA
TTGCCCTACGAATTCGACATGTGTCAACCTTATTGGATCATTCGATTGTT
TTTGCAACTCTGGTTACCAGAAGTGTGAAAACACGTGCAAAGATGTCGAT
GAATGTTCGGACCCAGACCTCAATAGATGTCATGCAAAGGCGAAGTGTGA
AAACACTATTGGATCTTACATGTGTTTCTGCCAAAAGGGATATTCAGAAA
TCAACGAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGACTTGT
ATCGATACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTCATTGG
GAATGGAACGATTTGTGAAGCACGATTTCCATTTTCACTTGTGTATTTTA
GATGAATTTATTTGTGGTGAAAATTATACTAAATGTCACGAAAAAGCACT
ATGCATATTAGATGACGAAAATTCCTCATGTCAATGCAAACAAGGATATA
TTGGAAATGGTGAAAGTTGCAAGATTAATGGCTCCTATCAATGTTATTGT
CAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTTTGATTTCAATGAATG
TTATTCTCCAACAACTCATAATTGTCATCAACATTCTAATTGTGTCAACA
ACATCGGTTCTTATACATGCCAATGTAGGAATGGCTTTATAAAAGTGATG
GATACCAATGTGGAGATCTCAATGAATGCAGCAACAACTCGATGAATAAT
TGTCATCAAAATGCTCTTTGTTTGAATACTGAAGATTTTGATGAATGCAA
AGCTGAGGTTGCTCATTGCCCTACGAATTCGACATGTGTCAACCTTATTG
GATCATTCGATTGTTTTTGCAACTCTGGTTACCAGAAGTGTGAAAACACG
TGCAAAGATGTCGATGAATGTTCGGACCCAGACCTCAATAGATGTCATGC
AAAGGCGAAGTGTGAAAACACTATTGGATCTTACATGTGTTTCTGCCAAA
AGGGATATTCAGAAATCAACGAATGCAAACTTAATTTACACACTTGTCAT
GCGAATGCGACTTGTATCGATACTCATGAACATTATCAATGTTCTTGCAA
AGATGGGTTCATTGGGAATGGAACGATTTGTGAAGCACGATTTCCATTTT
CACTTGTGTATTTTAGATGAATTTATTTGTGGTGAAAATTATACTAAATG
TCACGAAAAAGCACTATGCATATTAGATGACGAAAATTCCTCATGTCAAT
GCAAACAAGGATATATTGGAAATGGTGAAAGTTGCAAGATTAATGGCTCC
TATCAATGTTATTGTCAGAAAGGTTTCTACGGGAATGGAAGAAAATGTTT
TGATTTCAATGAATGTTATTCTCCAACAACTCATAATTGTCATCAACATT
CTAATTGTGTCAACAACATCGGTTCTTATACATGCCAATGTAGGAATGGC
TTTATAAAAGTGATGGATACCAATGTGGAGATCTCAATGAATGCAGCAAC
AACTCGATGAATAATTGTCATCAAAATGCTCTTTGTTTGAATACTGAAGA
TTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCCCTACGAATTCGACAT
GTGTCAACCTTATTGGATCATTCGATTGTTTTTGCAACTCTGGTTACCAG
AAGTGTGAAAACACGTGCAAAGATGTCGATGAATGTTCGGACCCAGACCT
CAATAGATGTCATGCAAAGGCGAAGTGTGAAAACACTATTGGATCTTACA
TGTGTTTCTGCCAAAAGGGATATTCAGAAATCAACGAATGCAAACTTAAT
TTACACACTTGTCATGCGAATGCGACTTGTATCGATACTCATGAACATTA
TCAATGTTCTTGCAAAGATGGGTTCATTGGGAATGGAACGATTTGTGAAG
CACGATTTCCATTTTCACTTGTGTATTTTAGATGAATTTATTTGTGGTGA
AAATTATACTAAATGTCACGAAAAAGCACTATGCATATTAGATGACGAAA
ATTCCTCATGTCAATGCAAACAAGGATATATTGGAAATGGTGAAAGTTGC
AAGATTAATGGCTCCTATCAATGTTATTGTCAGAAAGGTTTCTACGGGAA
TGGAAGAAAATGTTTTGATTTCAATGAATGTTATTCTCCAACAACTCATA
ATTGTCATCAACATTCTAATTGTGTCAACAACATCGGTTCTTATACATGC
CAATGTAGGAATGGCTTTATAAAAGTGATGGATACCAATGTGGAGATCTC
AATGAATGCAGCAACAACTCGATGAATAATTGTCATCAAAATGCTCTTTG
TTTGAATACTGAAGATTTTGATGAATGCAAAGCTGAGGTTGCTCATTGCC
CTACGAATTCGACATGTGTCAACCTTATTGGATCATTCGATTGTTTTTGC
AACTCTGGTTACCAGAAGTGTGAAAACACGTGCAAAGATGTCGATGAATG
TTCGGACCCAGACCTCAATAGATGTCATGCAAAGGCGAAGTGTGAAAACA
CTATTGGATCTTACATGTGTTTCTGCCAAAAGGGATATTCAGAAATCAAC
GAATGCAAACTTAATTTACACACTTGTCATGCGAATGCGACTTGTATCGA
TACTCATGAACATTATCAATGTTCTTGCAAAGATGGGTTCATTGGGAATG
GAACGATTTGTGAAGCACGATTTCCATTTTCACTTGTGTATTTTAGATGA
ATTTATTTGTGGTGAAAATTATACTAAATGTCACGAAAAAGCACTATGCA
TATTAGATGACGAAAATTCCTCATGTCAATGCAAACAAGGATATATTGGA
AATGGTGAAAGTTGCAAGATTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001459XLOC_001459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002700-exon-sc0000021-1575043694:598227..598387TCONS_00002700-exon-sc0000021-1575043694:598227..598387Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1575043694:597663..597785TCONS_00002700-exon-sc0000021-1575043694:597663..597785Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1575043694:596520..596747TCONS_00002700-exon-sc0000021-1575043694:596520..596747Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1575043694:593662..593751TCONS_00002700-exon-sc0000021-1575043694:593662..593751Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1575043694:592892..593056TCONS_00002700-exon-sc0000021-1575043694:592892..593056Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1510915933:598227..598387TCONS_00002700-exon-sc0000021-1510915933:598227..598387Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1510915933:597663..597785TCONS_00002700-exon-sc0000021-1510915933:597663..597785Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1510915933:596520..596747TCONS_00002700-exon-sc0000021-1510915933:596520..596747Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1510915933:593662..593751TCONS_00002700-exon-sc0000021-1510915933:593662..593751Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1510915933:592892..593056TCONS_00002700-exon-sc0000021-1510915933:592892..593056Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1491911889:598227..598387TCONS_00002700-exon-sc0000021-1491911889:598227..598387Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1491911889:597663..597785TCONS_00002700-exon-sc0000021-1491911889:597663..597785Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1491911889:596520..596747TCONS_00002700-exon-sc0000021-1491911889:596520..596747Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1491911889:593662..593751TCONS_00002700-exon-sc0000021-1491911889:593662..593751Clytia hemisphaericaexon
TCONS_00002700-exon-sc0000021-1491911889:592892..593056TCONS_00002700-exon-sc0000021-1491911889:592892..593056Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002700-proteinTCONS_00002700-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:592892..598387 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0635802	0	0	0	4.28707	2.71016	66.1296	69.3327	52.1848	87.336	26.4747	62.2458	0.0422852	0	0	0	0	0	0	0	0	0	0	0	0.0682632	0	0	0	0	0.0718987
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR024731EGF_dom
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00002700 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.798e-39
Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 2 
Query:  110 CQCKQGYI--GNGESCKINEINECKLNLHTCHANATCIDTHEHYQC--SCKDGF--IGNGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCFCNSGYQKCENTCKDVDECSDPDLNRCHAKAKCENTIGSYMC--FCQKGYS-GDGYQCGDLNECSNNSMNNCHQNALCLNTEGSYQCYCQKGF--YGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNG 757
            C C +G     +G +C+  +I+EC L  HTCHA   C +T   Y+C   C  GF    +G  C+D +EC+      P +  C N IGSF C C  GYQ     C DV+EC     N C     C+NT G Y C   C  G +  +   C D++EC + + + C  N +C NT GSY+C C +G+   G GR C D NEC        HQ   C N  GS+ C C  G
Sbjct: 5130 CSCPKGLTIAADGRTCQ--DIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES---SPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECRQ---NVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGT-HQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAHQ---CSNTPGSFKCICPPG 5344

HSP 2 Score: 123.635 bits (309), Expect = 5.778e-31
Identity = 77/230 (33.48%), Postives = 107/230 (46.52%), Query Frame = 2 
Query:  101 NSSCQCKQGYIGNGESCKINEINECKLNLHTCHANATCIDTHEHYQCSCKDGFI--GNGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCF--CNSGYQKCEN--TCKDVDECSDPDLNRCHAKAKCENTIGSYMCFCQKGYSGDGYQCGDLNECSNNSMNNCHQNALCLNTEGSYQC--YCQKGFYG--NGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNGF 760
            + S QC  G+  +       + +EC       H   +C +    Y CSC  G     +G  C+D DEC      C     C N IGS+ C   C SG+++  +  +C+D++EC +   + CH +  C N IGS+ C C+ GY   G +C D+NEC  N    C  +  C NT G Y+C   C  G     NG  C D +EC    TH C  +  C N  GSY C C  G+
Sbjct: 5087 DRSNQCPSGFTLDSVGPFCADEDECAAGNPCSH---SCHNAMGTYYCSCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES--SPCHQR--CFNAIGSFHCGCEPGYQLKGRKCMDVNECRQNV---CRPDQHCKNTRGGYKCIDLCPNGMTKAENG-TCIDIDEC-KDGTHQCRYNQICENTRGSYRCVCPRGY 5304

HSP 3 Score: 95.9005 bits (237), Expect = 1.274e-21
Identity = 85/281 (30.25%), Postives = 112/281 (39.86%), Query Frame = 2 
Query:   44 CGENYTKCHEKALCILDDENSSCQCKQGYIGNGESCKINEINECKLNLHTCHANATCIDTHEHYQCS--CKDGFIG--NGTICEDFDECKAEVAHCPTNSTCVNLIGSFDCFCNSGY--QKCENTCKDVDECSDPDLNRCHAKAKCENTIGSYMCFCQKGYS--GDGYQCGDLNECSN-----NSMNNCHQNALCLNTE------------GSYQCY-----------------CQKGFYGNGRKCFDFNECYSPTTHNCHQHSNCVNNIGSYTCQCRNGF 760
            C E+ + CH++  C     +  C C+ GY   G  C   ++NEC+ N+  C  +  C +T   Y+C   C +G     NGT C D DECK     C  N  C N  GS+ C C  GY  Q     C D++EC        H   +C NT GS+ C C  G    GDG  C  L    N     +S N    + +  N +             SY  Y                 C +G   +   C D +EC    T  C QH  C N  GSY C C  G+
Sbjct: 5196 CQES-SPCHQR--CFNAIGSFHCGCEPGYQLKGRKCM--DVNECRQNV--CRPDQHCKNTRGGYKCIDLCPNGMTKAENGT-CIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAH---QCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPNYGTQYSSYNLARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDEC--ENTDAC-QHE-CKNTFGSYQCICPPGY 5461
The following BLAST results are available for this feature:
BLAST of TCONS_00002700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN16.798e-3937.44Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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