TCONS_00005166-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005166-protein
Unique Name	TCONS_00005166-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1022

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005166-protein ID=TCONS_00005166-protein|Name=TCONS_00005166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp
MHLLFAVFSILLFSGANSLPILNKSLPQNAVTTSPVNNSTTTPIKAPTGK
TETKETLVTNDTQETTSSTTQQPTTAEEEITKPALVSLIKPTDNQVAFNT
STPLLQSTEFTQHYENESISATSAIWTNGYTFVYTSIDSNNEETYYVTST
LPSDVFQTTQPNDFPHSTIVSHHQPSTSLTHGNQNIEQTTSWATEQFSTS
TTSSSSPKETTQPTTSHFSPKETTHPTTSHFYSLNPTTSVGERTTTTIKQ
TTSTTSSTTDEQSTTKDIATPISTRPESSNSTTAPTTLSSSETTSTSTPT
STLFNNKTSNKTQQTFEGSTEPSTPSATNTIEPIYHCEEEWIRNERKGDY
FFARTTIWDEVKHRCQYGSTKKLFYVKRECNWDKKLERAYWGEVDLTYCL
TPTKEKGIIVDIEDMEFTSTNWKKGLTYVSTIMDNQRTIVQSALDFSVIV
KTIHSVLGVSTQALHTETVSKVLLVLGNLLQLDNELLQEVDSYKEMLKVF
DSIAYNFIHTTSRTTLSVNGKFIALSLRKVRSRQITFATTSALSGNISML
YENQVGAMNSVTLPQSVFDGLPGEETVLFHEMVPTEAMPTLSNETMVSNI
ISVRVLTEQKKFDQLKDPIKLTFHVGPLKHVNVSCAFWDIQNGLWSKEGC
QVTSWLQNEGVVECQCQHLTDFAVIAESAIISSMTKGDEGSGFAHIFAFI
GSFIAVLALGATLITYLCVKTIRSQIASKAIASFSLSLMLAFISFVAALT
FVKKETLCFIVGRFLHYFILTSFSWMFIQAILLYRTIVVMSTKLTDGFYF
KLMSVFAWGLPLVITGVTSFFSYQMSFKQNNEHDVKLCFVEKAQFYGAVL
APTVLLAIVNVLLFIPIVRNMGDSDLLLTNTIEKNKKENTKRAKATFLIT
AIMVLLWTFAILHGMFQLVALQFIYLALIPVLGVLVCVLNIIRNEDAKKV
WLKIFVCCDGDEKESDVPELVKLRPKANLNSTDNEAKRVSIVINGGSYGY
GTETFGGESQQPRKNVSKEAVV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002941	XLOC_002941	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005166	TCONS_00005166	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 847..872 score: 25.68 coord: 921..941 score: 30.75 coord: 800..825 score: 20.53 coord: 760..783 score: 27.19 coord: 696..720 score: 16.88
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 695..915 e-value: 1.7E-17 score: 63.5
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 631..681 e-value: 2.9E-8 score: 43.5
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 634..675 e-value: 7.4E-12 score: 45.7
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 632..681 score: 13.421
None	No IPR available	GENE3D	1.20.1070.10		coord: 680..971 e-value: 1.4E-19 score: 69.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..183
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 697..962
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 694..944 score: 21.314

Blast

[Close]

BLAST of TCONS_00005166-protein vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 4.242e-33
Identity = 134/652 (20.55%), Postives = 281/652 (43.10%), Query Frame = 0

Query:  327 ATNTIEPIYHCEEEWIRNERKGDYFFARTTIWDEVKHRCQYGSTKKLFYVKRECNWDKKLERAYWGEVDLTYCLTPTKEKGIIVDIEDMEFTSTNWKKGLTYVSTIMDNQRTIVQSALDFSVIVKTIHSVLGVSTQALHTETVSKVLLVLGNLLQLDNELLQEVDSY-KEMLKVFDSIAYNFIHTTSRTTLSVNGKFIALSLRKVRSRQITFATTSALSGNISMLYENQV---GAMNSVTLPQSVFDGLP--GEETVLFHEMVPTEAMPTLSNETMVSNIISVRVLTEQKKFDQLKDPIKLTF-HVGPLKHVN-VSCAFWDIQN----GLWSKEGCQVTSWLQNEGVVECQCQHLTDFAVIAESAIISSMTKGDEGSGFAHIFAFIGSFIAVLALGATLITYLCVKTIRSQIASKAIASFSLSLMLAFISFV--AALTFVKKETLCFIVGRFLHYFILTSFSWMFIQAILLYRTIVVMSTKLTDGFYFKLMSVFAWGLPLVITGVTSFFSYQMSFKQNNEHDVKLCFV-EKAQFYGAVLAPTVLLAIVNVLLFIPIVRNMGDSDLLLTNTIEKNKKENT-KRAKATFLITAIMVLLWTFAILHGMFQLVALQFIYLALIPVL----GVLVCVLNIIRNEDAKKVWLKIFVCC 958
            A   +EP  +C+ +   ++ KG Y +  T   +  + RC            R C+      ++ W +     C    +    IVD+ ++  +  N +    ++  +++    + +   +  +IV  I  +      +++   V  +L ++  +L+  N    ++     E+L++ +   +    +     L+V G  +A+         + F+  S   G    ++   V   G + S+ LP+S+ + +P    +T+LF+    T    T +    ++  +    +++      L DP+ +T  H+G  ++   V CAFWD +N    G W+  GC+V     N     CQC HLT F V+ +   +S  T          +  + G  I+ + LG  ++TY+    +R    +K + +   +L++  + F+  + L+  +K  +C      LHYF+L SF+WM ++A+ +Y  +V +       +  K   V  WG+P ++  +T   S +             C++ + + FY +V+A   L+ ++N+ +F  ++  +      + + I+K +++      K T  +T ++ L W FA     F    ++  +L L  +     G  + V + +  E  ++ W +I +CC
Sbjct: 2377 AVKKLEP-GNCKADETASKYKGTYKWLLTNPTETAQTRCIKNEDGN---ATRFCSISINTGKSQWEKPKFKQCKLLQELPDKIVDLANITISDENAEDVAEHILNLINESPALGKE--ETKIIVSKISDISQCDEISMNLTHV--MLQIINVVLEKQNNSASDLHEISNEILRIIERTGHKMEFSGQIANLTVAGLALAVLRGDHTFDGMAFSIHSYEEGTDPEIFLGNVPVGGILASIYLPKSLTERIPLSNLQTILFNFFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYGQVHCAFWDFENNNGLGGWNSSGCKVKE--TNVNYTICQCDHLTHFGVLMD---LSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNYILKFCLV-GWGIPAIMVAIT--VSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNS----VKSQIQKTRRKMILHDLKGTMSLTFLLGLTWGFA----FFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQW-QIHLCC 3003

The following BLAST results are available for this feature:

BLAST of TCONS_00005166-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005166-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG4	4.242e-33	20.55	Adhesion G-protein coupled receptor G4 OS=Homo sap...	[more]

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TCONS_00005166-protein (polypeptide) - C. hemisphaerica