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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005166 ID=TCONS_00005166|Name=TCONS_00005166|organism=Clytia hemisphaerica|type=transcript|length=3392bpRun BLAST on NCBI protein sequence of TCONS_00005166-protein >TCONS_00005166-protein ID=TCONS_00005166-protein|Name=TCONS_00005166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1022bp MHLLFAVFSILLFSGANSLPILNKSLPQNAVTTSPVNNSTTTPIKAPTGKRun BLAST on NCBI transcript from alignment at sc0000051:741077..747822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005166 ID=TCONS_00005166|Name=TCONS_00005166|organism=Clytia hemisphaerica|type=transcript|length=6746bp|location=Sequence derived from alignment at sc0000051:741077..747822+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000051:741077..747822+ >TCONS_00005166 ID=TCONS_00005166|Name=TCONS_00005166|organism=Clytia hemisphaerica|type=CDS|length=36828bp|location=Sequence derived from alignment at sc0000051:741077..747822+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005166 vs. Swiss-Prot (Human)
Match: AGRG2 (Adhesion G-protein coupled receptor G2 OS=Homo sapiens GN=ADGRG2 PE=1 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 1.167e-25 Identity = 125/495 (25.25%), Postives = 221/495 (44.65%), Query Frame = 3
Query: 1545 KEMLKVFDSIAY--NFIHTTSRTTLSVNGKFIALSLRKVRSRQI---TFATTSALSGNISMLYENQVGAMNSVTLPQSVFDGLPGEETVL-------FHEMVPTEAMPTLSNETMVSNIISVRVLTEQKKFDQLKDPIKLTF-HVGPLK-HVNVSCAFWDIQN----GLWSKEGCQVTSWLQNEGVVECQCQHLTDFAVIAESAIISSMTKGDEGSGFAHIFAFIGSFIAVLALGATLITYLCVKTIRSQIASKAIASFSLSLMLAFISFVAA--LTFVKKETLCFIVGRFLHYFILTSFSWMFIQAILLYRTIVVMSTKLTDGFYFKLMSVFAWGLPLVITGV---TSFFSYQMS----FKQNNEHDVKLCFV-EKAQFYGAVLAPTVLLAIVNVLLFIPIVRNMGDSDLLLXXXXXXXXXXXXXRAKATFLITAIMVLLWTFAILHGMFQLVALQFIYLALI--PVLGVLVCVLNIIRNEDAKKVWLKIFVCC 2939
+ +LKV D I NF S TT+S+ +AL++ +V + TF + +S+ + ++ ++TLP S+ + LP + L F E P+L N +++S +IS V + L + +T H+ P + + V C FWD+ G WS GC V NE + C C HLT F V+ + + S + F +IG ++ + L TL+TY+ + IR SK + +L+L + F+ + K + LC V FLHYF+L SF+WM ++A +Y +V + + K + WG+P V+ + S +Y + F + D C++ A FY V+ ++ ++NV +FI ++ + ++ R+ A +T ++ + W FA + V + F+YL I + G + + + E+ +K W + ++CC
Sbjct: 421 QRLLKVVDDIGLQLNF----SNTTISLTSPSLALAVIRVNASSFNTTTFVAQDPANLQVSLETQAPENSIGTITLPSSLMNNLPAHDMELASRVQFNFFETPALFQDPSLENLSLISYVISSSVANLTVR--NLTRNVTVTLKHINPSQDELTVRCVFWDLGRNGGRGGWSDNGCSVKDRRLNETI--CTCSHLTSFGVLLDLSRTSVLPAQMMALTF---ITYIGCGLSSIFLSVTLVTYIAFEKIRRDYPSKILIQLCAALLLLNLVFLLDSWIALYKMQGLCISVAVFLHYFLLVSFTWMGLEAFHMYLALVKVFNTYIRKYILKF-CIVGWGVPAVVVTIILTISPDNYGLGSYGKFPNGSPDD--FCWINNNAVFYITVVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQDLRSIAG--LTFLLGITWGFAFF--AWGPVNVTFMYLFAIFNTLQGFFIFIFYCVAKENVRKQWRR-YLCC 896 The following BLAST results are available for this feature:
BLAST of TCONS_00005166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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