Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00003198-protein ID=TCONS_00003198-protein|Name=TCONS_00003198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp MLSTRSLSQGFAKYISPKVVAVSCQRTVLPPVLEEATGDPLPTSPYKFSQ NSRAPKTQTVLVNSLLGKQQQRFSHTDVNVPSFDEYRRDSCKDAETRSSE TDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVD LSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRV THPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAP LNLEVPPYQFSTETTLIVG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0055114 oxidation-reduction process
Vocabulary: Cellular Component
Term Definition
GO:0016020 membrane
Vocabulary: Molecular Function
Term Definition
GO:0016491 oxidoreductase activity
GO:0051537 2 iron, 2 sulfur cluster binding
GO:0008121 ubiquinol-cytochrome-c reductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0055114
oxidation-reduction process
cellular_component
GO:0016020
membrane
molecular_function
GO:0051537
2 iron, 2 sulfur cluster binding
molecular_function
GO:0016491
oxidoreductase activity
molecular_function
GO:0008121
ubiquinol-cytochrome-c reductase activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 240 260 Score = 68.12 Score = 67.31 Score = 72.69 Expect = 1.4E-46 / Score = 157.2 Expect = 1.1E-11 / Score = 44.3 Score = 19.05 Score = Expect = 2.6E-56 / Score = 188.4 Expect = 3.5E-21 / Score = 74.8 Expect = 4.7E-25 / Score = 87.7 Expect = 1.75572E-80 / Score = 240.154 Score = Sequence PR00162 G3DSA:2.102.10.10 PF00355 PS51296 SSF50022 TIGR01416 G3DSA:1.20.5.270 PF02921 cd03470 SSF81502
IPR Term IPR Description Source Source Term Source Description Alignment
IPR005805 Rieske iron-sulphur protein, C-terminal PRINTS PR00162 RIESKE coord: 207..218 score: 68.12 coord: 229..241 score: 67.31 coord: 241..253 score: 72.69
IPR017941 Rieske [2Fe-2S] iron-sulphur domain GENE3D 2.102.10.10 coord: 141..269 e-value: 1.4E-46 score: 157.2
IPR017941 Rieske [2Fe-2S] iron-sulphur domain PFAM PF00355 Rieske coord: 156..256 e-value: 1.1E-11 score: 44.3
IPR017941 Rieske [2Fe-2S] iron-sulphur domain PROSITE PS51296 RIESKE coord: 199..267 score: 19.05
IPR017941 Rieske [2Fe-2S] iron-sulphur domain SUPERFAMILY 50022 ISP domain coord: 129..267
IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit TIGRFAM TIGR01416 TIGR01416 coord: 104..269 e-value: 2.6E-56 score: 188.4
IPR004192 Ubiquinol cytochrome reductase, transmembrane domain GENE3D 1.20.5.270 coord: 75..137 e-value: 3.5E-21 score: 74.8
IPR004192 Ubiquinol cytochrome reductase, transmembrane domain PFAM PF02921 UCR_TM coord: 75..140 e-value: 4.7E-25 score: 87.7
None No IPR available CDD cd03470 Rieske_cytochrome_bc1 coord: 146..269 e-value: 1.75572E-80 score: 240.154
None No IPR available SUPERFAMILY 81502 ISP transmembrane anchor coord: 74..142
Blast
BLAST of TCONS_00003198-protein vs. Swiss-Prot (Human)
Match:
UCRI (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)
HSP 1 Score: 273.863 bits (699), Expect = 2.091e-92
Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 0
Query: 73 FSHTDVNVPSFDEYRRDSCKDAETRSSETDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVDLSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRVTHPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPYQFSTETTLIVG 269
+SHTD+ VP F EYRR D+ S E+ +R+ F+YL+ V +A KNA F+S+MSASADVLA+AK+E+ LS IP GKN KWRGKPLFVRHRTQ EI+Q AV LRDP+ D DRV P +++L+GVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIR GPAPLNLEVP Y+F+++ +IVG
Sbjct: 78 YSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
The following BLAST results are available for this feature:
BLAST of TCONS_00003198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M L S T R S L S Q G F A K Y I S P K V V A V S C Q R T V L P P V L E E A T G D P L P T S P Y K F S Q N S R A P K T Q T V L V N S L L G K Q Q Q R F S H T D V N V P S F D E Y R R D S C K D A E T R S S E T D L S R R A F T Y L M C A G L G V A A T H A G K N A A L D F L S T M S A S A D V L A I A K V E V D L S V I P P G K N A T I K W R G K P L F V R H R T Q D E I D Q V R A V A T D S L R D P E A D E D R V T H P N Y L V L L G V C T H L G C V P I A N A G D F G G Y Y C P C H G S H Y D A S G R I R K G P A P L N L E V P P Y Q F S T E T T L I V G 20 40 60 80 100 120 140 160 180 200 220 240 260 Expect = 2.09e-92 / Id = 62.94 Sequence UCRI
Match Name E-value Identity Description
UCRI 2.091e-92 62.94 Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
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