TCONS_00003198 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003198
Unique Name	TCONS_00003198
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1403

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000025:601986..611105-
coding sequence from alignment at sc0000025:601986..611105-

transcript sequence

>TCONS_00003198 ID=TCONS_00003198|Name=TCONS_00003198|organism=Clytia hemisphaerica|type=transcript|length=1403bp
cggcttgtttcacgagcgtgatggaaggcggtcgtttcagtgtggtttac
atccacactgtgacctagttcaTATGATATTTTGGTGCTGTGGGTACAAA
ACTTCGTGGAAGATTACACAACTTTTCTCTTAACAAAATAGCGTACCTCA
AAAGCACAGACagcttttttaaaagattttaccATCAGATGATTGGCTTG
AAGTCTACCATCTTGTACTTTCGAGGAATGTTTTCCTATTAggaaattag
aactgaaaataGGACAGAAGATAAGACCAACTGCTGAAGGAAAGTGTCCA
ACCTGTCCAAAATCCCAACGAAGATGCTTTCCACACGAAGTTTATCACAG
GGATTCGCCAAATATATTTCACCAAAGGTTGTTGCAGTATCATGTCAAAG
AACGGTTCTCCCACCCGTCTTAGAAGAGGCTACAGGAGATCCATTACCAA
CTTCACCAtacaaattttcacaaaatagTCGTGCTCCAAAAACTCAAACA
GTTTTGGTCAACTCACTACTTGGAAAACAACAACAGCGATTCAGTCACAC
CGACGTAAACGTACCCAGTTTCGATGAGTACCGACGTGATTCATGCAAAG
ATGCTGAAACACGTAGCTCAGAAACCGATCTCTCTCGACGTGCTTTCACA
TACTTGATGTGTGCCGGTCTTGGTGTTGCAGCTACACACGCTGGCAAAAA
TGCTGCCTTAGATTTCTTATCAACCATGAGCGCTTCTGCTGATGTTTTGG
CTATTGCCAAAGTTGAAGTGGACCTTTCCGTTATCCCACCAGGTAAGAAT
GCCACCATTAAGTGGAGAGGAAAACCACTCTTTGTTCGTCATCGTACTCA
AGACGAAATTGACCAAGTCCGTGCTGTTGCAACTGACAGTTTACGTGACC
CAGAAGCTGATGAAGACCGCGTCACCCATCCCAATTATCTTGTTCTTTTG
GGTGTATGCACACATTTAGGGTGTGTCCCAATTGCTAATGCTGGTGACTT
TGGAGGATATTACTGCCCTTGCCACGGATCCCATTATGACGCTTCAGGAC
GCATCCGAAAAGGTCCAGCACCACTTAACCTTGAAGTACCACCCTATCAA
TTTTCAACTGAAACAACTTTGATTGTGGGTTAATAAAGATTGGTGAGAAT
TTTTGTGGAAAGCAACAGAAAAATGTTAATAAAAcagtatttttaaattt
gtaaacTAAAGATTCTGTCTGGAAAAAATAAATGTGAAGTTAATTATTGT
AAACATAAGTGTGAATATGTCTGTGTCTGAGACTATATTACTACTAAAGA
TATTTTAAAGTTtgcttttttgttgattttacaCATGAAACATGGATGag
tcgaaaatcgaaaaaactgatgtttcacttttttagtGTGTTCTTATTTT
GCT

Run BLAST on NCBI

protein sequence of TCONS_00003198-protein

>TCONS_00003198-protein ID=TCONS_00003198-protein|Name=TCONS_00003198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MLSTRSLSQGFAKYISPKVVAVSCQRTVLPPVLEEATGDPLPTSPYKFSQ
NSRAPKTQTVLVNSLLGKQQQRFSHTDVNVPSFDEYRRDSCKDAETRSSE
TDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVD
LSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRV
THPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAP
LNLEVPPYQFSTETTLIVG

Run BLAST on NCBI

transcript from alignment at sc0000025:601986..611105-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003198 ID=TCONS_00003198|Name=TCONS_00003198|organism=Clytia hemisphaerica|type=transcript|length=9120bp|location=Sequence derived from alignment at sc0000025:601986..611105- (Clytia hemisphaerica)
CGGCTTGTTTCACGAGCGTGATGGAAGGCGGTCGTTTCAGTGTGGTTTAC
ATCCACACTGTGACCTAGTTCATATGATATTTTGGTGCTGTGGGTACAAA
ACTTCGTGGAAGATTACACAACTTTTCTCTTAACAAAATAGCGTACCTCA
AAAGCACAGACAGCTTTTTTAAAAGATTTTACCATCAGATGATTGGCTTG
AAGTCTACCATCTTGTACTTTCGAGGAATGTTTTCCTATTAGGAAATTAG
AACTGAAAATAGGACAGAAGATAAGACCAACTGCTGAAGGAAAGTGTCCA
ACCTGTCCAAAATCCCAACGAAGATGCTTTCCACACGAAGTTTATCACAG
GGATTCGCCAAATATATTTCACCAAAGGTTGTTGCAGTATCATGTCAAAG
AACGGTTCTCCCACCCGTCTTAGAAGAGGCTACAGGAGATCCATTACCAA
CTTCACCATACAAATTTTCACAAAATAGTCGTGCTCCAAAAACTCAAACA
GTTTTGGTCAACTCACTACTTGGTGAGTCAAATTTCATTTAATTTTTCCA
TATATAATCCCTCATTTTAGTATCTTAACATAAGTGTCATTCTATAAAAA
GGAAGGAGACTGCCTGTCAGTGAAGTACCGGGTCAACTGCTCTAACTTTT
GGGACGATTGGCGGTCGAATGGGCTCTTCCAGTTAAAGTCTGTTACATGG
GGGTGGACGACGGCAGAATTCCAAGGCAAAATGTTTTTTTGGAAACCTTT
GGGAGCTTGTTCACGCGTGTCTAATTTGGAAATGCGTGTGTCAATGTTCG
ATCATCGGAGATATAAGGGGAGCCGTCCATATTCATTTGACAACGCAAAA
CGTCAAATTGACGTTATGATAGCGACTCCAGAAGTCATGCAACTTTCGTT
GACGTCAAACCAAATGTTTCATTTTTCCGTGAACTTTGAACCCCTCAAAC
TTTTTTTCTATGCATGCTAAAGCGTCCGGATTTTACTAAATGAAAGCCTG
TGATCTGAGCTTTCCAGCGGTATGTAACACTGTGGACACGGGCTACAGTA
GACAGCAAATTGGTAAAATGCCGAACGTTTTGCAACATTTTGAAAATTGT
TTGCCGACGGGAGAAAAACATTTTGCAACTGTCGATGAACGAATGTGTCT
GGAAATTGGAGGAAATTGTATTTGAAGGCTGAAACTTTGTATGTTTATCA
GAAAAAGGGTGAGGAATTCAAAAATCACATTCGCTAAATTTAGTTCTTTC
ATTTTCATGTAGTTTTTTTCACTTTTTTTCTTCTTTTGCATGGGAATGTC
CCAAAAAAAAGTTTTTATTTCTGCCGAAATATGGATTTTCTTTTCATTTG
GCTATTTGGGGTTTCTCCTTTCAGAAAAACTTATTCTTTACTCATAAGTT
TTTGTTCCTCCATTTCCAGAGGCCCTTTGAAAATGGGTCCTACCACCTTT
TTTGACTCATTTCAACCTTTTCCAAGCTACTTTTCTTCAAAAACAAAAAT
AAAACAATGCAATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTACAAATATTTTTATATAATAATATTCTAACACCATCA
AAGAATTCTCCCTCCAAATTTCAGGTCTCTAGCTACACTAGAAAAAGAGA
TATGCAAAATTGAAGAAGTATGAATGGAAAATTTCTTTTTTTTCTTTTTT
GACACATTTTTCGAATATTTTTTCCAAGCTATTTTCCTAACCTTTTTTTG
ACATTTTTAGTCAAATTTTTGACACTAAAATTTGAATATCTTTACAACCA
CTTATCCTCTGGAGGCCTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAGGCCTATGACCCCTCATTTTCTTTCTTTTTCAAAGCTCTACAAGATA
GGATAGATTTTGAAAAAAAAATTAAAATTTGAAAAATCTTCTGGAGTTGC
TAGTTATGAGGGGGTGGGGGTTAGGTTTGACCTTATAAGAAATCAAAGGT
ATACCTTTTTGTGAAAATCCCGGATATTTGTAACCACCAACCACACTATA
CTTTTTAAGCTTTCAAAAACATATTCGTGTATGAAGTACGTGAAAATTTG
CTGCTCGCATAATCCCATTGGTTCGCGCTATGATATCATTACATCATATT
TTCATTGTTTGCGCGATCGAGCGAACCACATCGCACAAGTGGGCAAAGAA
GGTGGTACGCCTAAAGCACGGCATGGACCTAGCGCCAAGTGGAGCTTTTG
ATTTCTTTTTAAATAAAGGTCATTAGCTAAAAGAACACATACACGCACGG
GTACAACAAGTCAGGTTTTTGCGGCGGAACGAGAAAACTTTGATGAAAAA
TGGCTACAACTTTTGGTATACATCAGTACATCGCTTGACGTTATCTGTGG
GGGGTGGGGGGTTCAGAGGATAACGTCAATTTGACGTTTTGCGTTGTCAA
ATGAATATGGACGGGTCCCCTAAGTTTTACCAATGTCTAAACTGTTGACT
ATATCTAAAGAATACACCTCATTGGAAATTCCACCTCCTCGCGTTGTTGC
TACGCAACATTTTTTGGGAGGTAAACAAAGCGCGATATTGCGGTTTGCAG
ACAAAAAGCCTTACAAAACACCCGAAATATTGATGCCAAAAGAGCCTCCA
TGACTGAAGAACCACCGAAGTTGTTGTTTTTCTCTTTCTTATAGCTTCTG
CTAGCATCTTGAAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATA
TACTAAAAAGGGGGGTTTTTTTAAAAAAAACCCCCCCTTGAAAATAATTT
GAAAAAAAAAAAAAACTTTTAAAATTTTAAAAGTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCAAATTCACTGAAATGAGGTGTATTTTTAGGAACATATA
AACAAGCCAGACATAAGCAAATGAGTTCTTGTTTTACGCGGGAACTACTC
GCGCTACCATTTATGTTTACCTCCCAATTTTTTTTGTGGAATTTCCAATG
AGGTGTATTTGTAAACCTTTTTAAGATCTGTAAAAAGCTCCCTACAGTAC
TCCCAAATACCGTGAGTGGTCCTAAATCCGACAGCGCTGCCTAATTCCGA
CCCTCCAAATCAGTGTAGACCTAACTCTTCACACACAAATTACGGGAAAC
GCATGTTTGGACTTTGTACCCTATGCTGCACTCAAGCACTTAAGCCAAAG
TCCTGCAAAGGCGGAACAAAGATCAGTTTTTTGAAGTTTGCAAAAAAACG
CCACATAGAAAATCTTTCAAATTCAGTATGTGAATAGAGCAGTAAAAAAT
ACAACTTTTCTATTTTTCATTTTCTTTGCAAAAGTTCTAGGAATGAAAAT
AAAGGGATAATGACAATTGAATACTATCCATTGATGACCCGCGGCACTAT
CGTAAAGCTAGAATCGCTTCGCGTACTCTTCGCTTGAGAAAATGATTGAC
AGATTGAAGTTTTTCACCCGCGCAGGAGTTCGCTCAATCCTCGGAGGATG
GTTTTGGAGTGAAATTTTTAAACACGGAATTTTGAGTGGGGCTGAAATTC
AAGGGCATTTTACCACCATGGACAAAATTTTTGCTTAATTTGTGACACAG
GGGTGTTTAAATCTTATTAATTTTGCCTAAAATGCTCGGTCAATAGTTTC
ATTTCCTAAAATTTGGTGATTTTTAGTACTCATGTACTAAAATTTTTCTT
AAATTTCTGGAAGACCCCACCTAATTTGGGATTTTAGTACACATGGTACT
AAAATGCTTTATAGTACGGTCTAGTTGTGCAAATATTGTGCACAAAGGCG
TAAAAGCACGAAACTTTGCACAATGGTAGTTTAGGGGTCAAAAATTGATT
TAAATCTCAGACCCAAAAAATTGACACCTGTTTGTGTATTTTACAGACCA
GAATAGGTTTCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCAAAAT
TTGTCAACCTAACAATACTAAAAAAAACTATTGTAAAATAAGCTTGCAGC
TGATCTAACCAATAGTATTTAGTACCTGAGAGGTACTCTATTGAATCTAC
AAAAATAAACACGTTTGGGTGGTCCTGGAATTTTTGCTGACATCAGTAAT
TACGTCATTTTCGGTCATTTTTTAAACAACCTTCCCCAATAACTTTTATT
GGCTTCATTTTAAGATATGGGTTGTAATGTTTTTCTGAACGGGCATGAAA
CATGCTTTCCAACGGTATGTAACATGACATACTTTGGAGAAAAAGATTTT
CATTTTAGCCTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATT
TAAATCCATTTTTGACCCCTAAACTACCATTGTGCAAAGTTTCATGCTTT
TACGCCCTTGTGCACAATGTTTATGACTTTTGGCACATTTAGACTGCACT
ATTAAGGCTTTTTTTGTAATACCACCACGTCACTAAAAGTCATGATGTCT
GAAATTTTAGTATCGACCCCCCCCTGTATCATCTATTGCTCAAATTTTCA
TTAAAAAGCGCCGGGTTATTTTTTTCATGAATCCCTGTAGAAGTTTTGCG
GTGCATTTTTTTGCTTGAGAGTCAGGTAAACGATAGAGCGCTTTTGCAGC
ATTAATCTTTGATACGCATTTTGGCGGGACGCTAGTGTGACTAACTGTGA
GTTAATGAACCGCGTATTAAAAGATACACGATTTCTCTTTCGCACCCAGT
AGGCTTTTAAATCGAAATATGAGAAAAATCCGTAGTGGAGCGCACGCGAA
TGTCTGGAACAAAGAAGAACAAATTAGTGCCAAAACGAAATGAAAGATCG
AAAGTTGTTTCGAGTTGTGACGTCACACAGCGTCACATTCTATTGCTTTT
GTAAACAAAAAAATCTAAATTGATTTCAAACAAATTTACAATTGAAAGTC
CGATTTCAAAAAATTTGGACTGACAGGATGGTTATTTACAATGATATGAA
CAAAATATAATCTAAAAGTTGGCAAAACCTAAGGATAACTCACAACTCGT
ACATTTGATTAGTTATCAATTCACAATTGAATCTGATAACTTGATTGGGT
ATAAGTTGCATCTGACGCCTATTTTGGAAATCGAAATCCGTGCTGAGGTG
CAATATTTCAAGCAAGACTCCATATTTTTTATATTATTTGGTGACTTAGA
AACTGTCATTTTTGGCAAAAATTGTTTTTTTCTTACTAAAAAGAGAGTTA
TGAAGACGCTATTATGAATTAAGCGAATGACGAAAAACTGACGTTTTATT
TTGCTCAAGTACCTCATTGGAGACTTCCATCTCTAAAGGCTTCAGACATC
ATATTACCTTATCGGCCCTTTTTACGCCAAAGGCCCAAAATTAACGCCAA
TAAGGGTCGGCGTAAAAAAGGCCGATAAGGTAGTTTGAAAGCTACGGACT
TGANTAATAAGGGCCGGCGTAAAAGGGCCGATAAGGTAGTTTGAAAGCTA
CGGACTTGATGTATTTTAATCGGCCTTTTGCTACCCAAAATTGGCTTGTT
TAGGGCTCGAATCAGGGGGGGTACCAAGTCGTGGTACTGGACCAGTGCCG
AAAAGTTGTACTTTCTTGTTTTTTGAAATTTATCTGAGACCACCATCACT
TAGTACCCTGGTACTAAGTTGAATTTACCACTTAAAGTAGGTATACCACC
CCTTAATACCCGGTACAGTCTTGATATCACCATTGAGAAACGACACACCA
CCGTTAAGTACCCTGTACTAAGTTGATTTTCCCCCTCAAAATAGGTATAC
CGGGTGGTTTAGTTCTTAGTAATTTACTTTTTGGTCTTTGATTTCTGGTA
CTTTGTGGTACATCTCCTTTAAATTTTCTAAAAAACTTTACAACATTAAA
AAACATACCACACCACTCTGTACCCACCCTTAATATCTCAGGAAAAATTC
CTGTCAAGTTAGGTAAAGTCAAATATCATTTTCAAGTCAATTTTTTTAAA
TCCAAAGAAATCAGTTTCAAATAAAAACATTTGTATAACGAGCTTGTCAA
AGAAATCAAAAGAACTACAATAAACTAGTCTCGAAAAAAATGAGAAATAA
GAATAGCTAAAAATAGTTTTGAAACTGCTCATTCAAAGGCAAAAATGTAA
CAACCATCTCAAGAAAATCCTAAGAACTTATAAAGTATACTATTGAATTA
AAATCACTTCTGGCTCTGCTGGAAGTTTCAAATTTGATTGAAAAGCTTTC
TTTTCAACNAGTACCGACCCCCTGGGGGGTACGGGGCCCCCTGCTCGAAT
GGGCAGGAATGGGTATAGTTTTATTATTTTTGAAATTTAGTACAACAAAT
GAAAAATAAGATTTGCTAATACTTTGAAATATGCACAAGCCAAATACCGT
TTTTCTAATTTTCTAAAAGAAACAGCACATTTTTAATTTTCTGACTTCAC
CCTAAAAATGGCTGTTGACCCCATTGAAGTATAAGCCCGAAGGGCTAGAA
TCGAATCTCTAACCTTTCTCAGGCAAGAACAAGTGAAGCCTTAAAACATG
CGTCGTATTTTGACGACGGATTCGATCTAGCAATTCTTTTGTTTTCATGT
GATATTTTTGAAATTTAGCAGTAAATTTTAGTTCCAATCTGCCATTTGTG
TAAAAACTAGGCGGACCGTGTTAGGCCGTGCAACTTTGGTAGGATTTGTT
GGCTTCAAATCCTACCAAGGAGATTCGATTCTAGCCCTTCGGGCTTATAC
TTCATTGGTTGACCCTACCCTATTCCTGAAAAATCTNTTAGGCGGACCGT
GTTAGGCCGTTCAACTTTGGTAGGATTTGTTGGCTTCATTGGTTGACCCT
ACCCTATTCCTGAAAAATCTTTGAAAAAACAAACATTTTCATTTATCTAT
ATTCCAGTTTTGAACAATTTTGTCTTCATGTTTTTTTAGGAAAACAACAA
CAGCGATTCAGTCACACCGACGTAAACGTACCCAGTTTCGATGAGTACCG
ACGTGATTCATGCAAAGATGCTGAAACACGTAGCTCAGAAACCGATCTCT
CTCGACGTGCTTTCACATACTTGATGTGTGCCGGTCTTGGTGTTGCAGCT
ACACACGCTGGCAAAAATGCTGCCTTAGATTTCTTATCAACCATGAGCGC
TTCTGCTGATGTTTTGGCTATTGCCAAAGTTGAAGTGGACCTTTCCGTTA
TCCCACCAGGTAAGAATGCCACCATTAAGTGGAGAGGAAAACCACTCTTT
GTTCGTCATCGTACTCAAGACGAAATTGACCAAGTCCGTGCTGTTGCAAC
TGACAGTTTACGTGACCCAGAAGCTGATGAAGACCGCGTCACCCATCCCA
ATTATCTTGTTCTTTTGGGTGTATGCACACATTTAGGGTGTGTCCCAATT
GCTAATGCTGGTGACTTTGGAGGATATTACTGCCCTTGCCACGGATCCCA
TTATGACGCTTCAGGACGCATCCGAAAAGGTCCAGCACCACTTAACCTTG
AAGTACCACCCTATCAATTTTCAACTGAAACAACTTTGATTGTGGGTTAA
TAAAGATTGGTGAGAATTTTTGTGGAAAGCAACAGAAAAATGTTAATAAA
ACAGTATTTTTAAATTTGTAAACTAAAGATTCTGTCTGGAAAAAATAAAT
GTGAAGTTAATTATTGTAAACATAAGTGTGAATATGTCTGTGTCTGAGAC
TATATTACTACTAAAGATATTTTAAAGTTTGCTTTTTTGTTGATTTTACA
CATGAAACATGGATGAGTCGAAAATCGAAAAAACTGATGTTTCACTTTTT
TAGTGTGTTCTTATTTTGCT

Coding sequence (CDS) from alignment at sc0000025:601986..611105-

>TCONS_00003198 ID=TCONS_00003198|Name=TCONS_00003198|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000025:601986..611105- (Clytia hemisphaerica)
GAAAACAACAACAGCGATTCAGTCACACCGACGTAAACGTACCCAGTTTC
GATGAGTACCGACGTGATTCATGCAAAGATGCTGAAACACGTAGCTCAGA
AACCGATCTCTCTCGACGTGCTTTCACATACTTGATGTGTGCCGGTCTTG
GTGTTGCAGCTACACACGCTGGCAAAAATGCTGCCTTAGATTTCTTATCA
ACCATGAGCGCTTCTGCTGATGTTTTGGCTATTGCCAAAGTTGAAGTGGA
CCTTTCCGTTATCCCACCAGGTAAGAATGCCACCATTAAGTGGAGAGGAA
AACCACTCTTTGTTCGTCATCGTACTCAAGACGAAATTGACCAAGTCCGT
GCTGTTGCAACTGACAGTTTACGTGACCCAGAAGCTGATGAAGACCGCGT
CACCCATCCCAATTATCTTGTTCTTTTGGGTGTATGCACACATTTAGGGT
GTGTCCCAATTGCTAATGCTGGTGACTTTGGAGGATATTACTGCCCTTGC
CACGGATCCCATTATGACGCTTCAGGACGCATCCGAAAAGGTCCAGCACC
ACTTAACCTTGAAGTACCACCCTATCAATTTTCAACTGAAACAACTTTGA
TTGTGGGTTAAATGCTTTCCACACGAAGTTTATCACAGGGATTCGCCAAA
TATATTTCACCAAAGGTTGTTGCAGTATCATGTCAAAGAACGGTTCTCCC
ACCCGTCTTAGAAGAGGCTACAGGAGATCCATTACCAACTTCACCATACA
AATTTTCACAAAATAGTCGTGCTCCAAAAACTCAAACAGTTTTGGTCAAC
TCACTACTTGGAAAACAACAACAGCGATTCAGTCACACCGACGTAAACGT
ACCCAGTTTCGATGAGTACCGACGTGATTCATGCAAAGATGCTGAAACAC
GTAGCTCAGAAACCGATCTCTCTCGACGTGCTTTCACATACTTGATGTGT
GCCGGTCTTGGTGTTGCAGCTACACACGCTGGCAAAAATGCTGCCTTAGA
TTTCTTATCAACCATGAGCGCTTCTGCTGATGTTTTGGCTATTGCCAAAG
TTGAAGTGGACCTTTCCGTTATCCCACCAGGTAAGAATGCCACCATTAAG
TGGAGAGGAAAACCACTCTTTGTTCGTCATCGTACTCAAGACGAAATTGA
CCAAGTCCGTGCTGTTGCAACTGACAGTTTACGTGACCCAGAAGCTGATG
AAGACCGCGTCACCCATCCCAATTATCTTGTTCTTTTGGGTGTATGCACA
CATTTAGGGTGTGTCCCAATTGCTAATGCTGGTGACTTTGGAGGATATTA
CTGCCCTTGCCACGGATCCCATTATGACGCTTCAGGACGCATCCGAAAAG
GTCCAGCACCACTTAACCTTGAAGTACCACCCTATCAATTTTCAACTGAA
ACAACTTTGATTGTGGGTTAAATGCTTTCCACACGAAGTTTATCACAGGG
ATTCGCCAAATATATTTCACCAAAGGTTGTTGCAGTATCATGTCAAAGAA
CGGTTCTCCCACCCGTCTTAGAAGAGGCTACAGGAGATCCATTACCAACT
TCACCATACAAATTTTCACAAAATAGTCGTGCTCCAAAAACTCAAACAGT
TTTGGTCAACTCACTACTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001764	XLOC_001764	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003198-protein	TCONS_00003198-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00003198-exon-sc0000025-1575043694:610584..611105	TCONS_00003198-exon-sc0000025-1575043694:610584..611105	Clytia hemisphaerica	exon
TCONS_00003198-exon-sc0000025-1575043694:601986..602866	TCONS_00003198-exon-sc0000025-1575043694:601986..602866	Clytia hemisphaerica	exon
TCONS_00003198-exon-sc0000025-1510915933:610584..611105	TCONS_00003198-exon-sc0000025-1510915933:610584..611105	Clytia hemisphaerica	exon
TCONS_00003198-exon-sc0000025-1510915933:601986..602866	TCONS_00003198-exon-sc0000025-1510915933:601986..602866	Clytia hemisphaerica	exon
TCONS_00003198-exon-sc0000025-1491911889:610584..611105	TCONS_00003198-exon-sc0000025-1491911889:610584..611105	Clytia hemisphaerica	exon
TCONS_00003198-exon-sc0000025-1491911889:601986..602866	TCONS_00003198-exon-sc0000025-1491911889:601986..602866	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000025	supercontig	sc0000025:601986..611105 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
333.026	335.705	413.231	409.507	319.439	266.484	302.172	321.693	418.574	401.702	525.578	535.664	444.684	461.631	443.604	436.746	581.041	630.277	325.967	287.92	727.464	746.181	354.008	404.602	528.388	506.709	575.316	664.27	402.488	383.017

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005805	Rieske_Fe-S_prot_C
IPR017941	Rieske_2Fe-2S
IPR006317	Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR004192	Ubiquinol_cyt_Rdtase_TM

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0008121	ubiquinol-cytochrome-c reductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016020	membrane
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Blast

[Close]

BLAST of TCONS_00003198 vs. Swiss-Prot (Human)
Match: UCRI (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 6.393e-88
Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 3

Query:  540 FSHTDVNVPSFDEYRRDSCKDAETRSSETDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVDLSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRVTHPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPYQFSTETTLIVG 1130
            +SHTD+ VP F EYRR    D+   S E+  +R+ F+YL+     V   +A KNA   F+S+MSASADVLA+AK+E+ LS IP GKN   KWRGKPLFVRHRTQ EI+Q  AV    LRDP+ D DRV  P +++L+GVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIR GPAPLNLEVP Y+F+++  +IVG
Sbjct:   78 YSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274

The following BLAST results are available for this feature:

BLAST of TCONS_00003198 vs. Swiss-Prot (Human)

BLAST of TCONS_00003198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UCRI	6.393e-88	62.94	Cytochrome b-c1 complex subunit Rieske, mitochondr...	[more]

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TCONS_00003198 (transcript) - C. hemisphaerica