TCONS_00002484-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002484-protein
Unique NameTCONS_00002484-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002484-protein ID=TCONS_00002484-protein|Name=TCONS_00002484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MGYELTRFECDVDEELICPICSGVLEEPVQAPICEHAFCTACINEWLNLQ
ETCPVDRQSITSPELKPVPRILKNLLARLTIKCTNAEFGCESLIKLDVLN
HHLLECNHNPKRPVQCDKGCGLIVPLDEVSQHNCVRELHSIIHSQGEQIT
ELKEKAIDFQHQISEVKQQVTILTDVIRSFRLSASNLALGQPVNRSYADS
TSDEVIQWIQTLPQARVTRWGGMISTPDAVLQAVIRRSLSDSGCPPYILD
PLMENAHERRWSQGLSTLETRQMNRRRYEQYIARRIPGKQAVVVMACENR
HMGDFMVMEPGIVMIFAHGIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001327XLOC_001327Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002484TCONS_00002484Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR001841Znf_RING
IPR015036USP8_interacting
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0031386protein tag
GO:0016881acid-amino acid ligase activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0016881 acid-amino acid ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0031386 protein tag
molecular_function GO:0004842 ubiquitin-protein transferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..169
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 18..55
e-value: 1.9E-9
score: 37.1
NoneNo IPR availableSUPERFAMILY160088NRDP1 C-terminal domain-likecoord: 202..321
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..87
IPR003613U box domainSMARTSM00504Ubox_2coord: 15..79
e-value: 0.0065
score: 16.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 18..56
e-value: 2.3E-5
score: 33.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..57
score: 11.855
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 18..60
e-value: 1.45781E-7
score: 46.2848
IPR015036USP8 interactingPFAMPF08941USP8_interactcoord: 137..321
e-value: 2.5E-73
score: 245.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..72
e-value: 2.2E-16
score: 58.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 73..132
e-value: 1.8E-8
score: 33.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 34..43
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 79..143

Blast
[Close]
BLAST of TCONS_00002484-protein vs. Swiss-Prot (Human)
Match: RNF41 (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2)

HSP 1 Score: 413.305 bits (1061), Expect = 5.828e-146
Identity = 190/321 (59.19%), Postives = 249/321 (77.57%), Query Frame = 0 
Query:    1 MGYELTRFECDVDEELICPICSGVLEEPVQAPICEHAFCTACINEWLNLQETCPVDRQSITSPELKPVPRILKNLLARLTIKCTNAEFGCESLIKLDVLNHHLLECNHNPKRPVQCDKGCGLIVPLDEVSQHNCVRELHSIIHSQGEQITELKEKAIDFQHQISEVKQQVTILTDVIRSFRLSASNLALGQPVNRSYADSTSDEVIQWIQTLPQARVTRWGGMISTPDAVLQAVIRRSLSDSGCPPYILDPLMENAHERRWSQGLSTLETRQMNRRRYEQYIARRIPGKQAVVVMACENRHMGDFMVMEPGIVMIFAHGIE 321
            MGY++TRF+ DVDE+LICPICSGVLEEPVQAP CEHAFC ACI +W + Q+TCPVDR  +T   L+PVPRI++N+L++L I C NA FGC ++++LD L  HL +C HNPKRPV C++GCGL +P DE+  HNC++ L S++  Q  +I EL++ + + +HQ++E K+ + +L   +R+ R    NL   Q +  +      +E+++W+ +L  ARVTRWGGMISTPDAVLQAVI+RSL +SGCP  I++ L+ENAHER W QGL+TLETRQMNRR YE Y+A+RIPGKQAVVVMACEN+HMGD MV EPG+VMIFAHG+E
Sbjct:    1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNL---QNLEETI---EYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 315
The following BLAST results are available for this feature:
BLAST of TCONS_00002484-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF415.828e-14659.19E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens ... [more]
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