|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002484 ID=TCONS_00002484|Name=TCONS_00002484|organism=Clytia hemisphaerica|type=transcript|length=1843bp
CTCTGAGCTGCTGAATGAACTCTACAGAACAAACTCAACTCTCCCCATTT
TGGTGAATTGAAGAATACTGAAGGATTATCTACAAGCTGTTGAGGAATGA
AAAAATGGGATACGAATTAACAAGATTTGAATGTGATGTAGACGAGGAAC
TTATATGTCCTATTTGCAGTGGTGTTTTGGAAGAACCAGTACAAGCACCT
ATCTGTGAACATGCATTTTGTACAGCATGTATTAATGAATGGCTTAATCT
ACAGGAAACATGTCCAGTTGATAGACAATCTATTACTAGTCCTGAACTAA
AACCAGTACCACGAATCCTTAAAAATCTGTTGGCACGATTGACTATAAAG
TGTACTAATGCAGAATTTGGATGTGAAAGCTTAATCAAGTTGGACGTGTT
GAACCACCATTTATTGGAATGTAATCATAATCCAAAGCGACCGGTTCAAT
GTGATAAGGGATGTGGTTTGATTGTACCACTGGATGAGGTTTCACAACAT
AATTGCGTTCGAGAGTTACATTCTATCATTCATTCACAAGGAGAACAAAT
AACAGAACTCAAAGAAAAAGCTATTGATTTCCAACATCAAATTAGTGAAG
TCAAACAGCAAGTGACTATTCTAACAGATGTGATACGCAGTTTTCGGCTC
TCTGCCAGTAATTTGGCCTTAGGCCAACCAGTGAACCGTAGTTACGCTGA
TAGTACTTCGGATGAGGTTATACAATGGATACAAACATTACCTCAAGCTA
GGGTTACACGATGGGGTGGTATGATCTCAACCCCTGATGCTGTACTCCAA
GCAGTAATCAGAAGGTCACTCTCAGATAGTGGTTGCCCACCTTACATTCT
TGATCCATTGATGGAGAACGCACATGAGAGACGTTGGTCACAAGGGCTGA
GTACATTGGAAACTAGACAAATGAACAGAAGACGTTATGAACAATATATA
GCACGTCGTATACCTGGAAAACAAGCTGTGGTAGTCATGGCATGTGAGAA
CCGACATATGGGAGATTTCATGGTAATGGAGCCAGGCATTGTTATGATCT
TTGCTCATGGGATTGAATGACTTTTCTCGTTTATATGGTGGGGCTAGAAG
TATTTTTTGTGACCGCTAAGACCGCTACAGTTAAGCAATATTCTTTTTGG
ATCTGTATGTTTTTGGATTGAATACAGATGCAGTACTGCTAATTGTATGG
TAGGGAATATGGATGTATTACATTTTGGTATTTAATTGGTTAGTGTCTGA
CACCTTGCACATTCAAGTATTTGTTGGTGAGCTTTTTAAACTATCGAGAA
CAAACTAGTCGAGTTAAGTTTTgtttaaatttcgaaatttgaaagttttt
aaacatGGATATACACaggcatttttttctttgtttgttttatacTGAGC
GTTGAGTTGAGCatagtgaaaaatgaaaatattgaaaaaataattttggg
caaaaaatggTTTTAGTCTATGACCttcaaaatttgttattttccTAATT
GCAatgtctttctttgttttttcaacgGTTCTGAGTTTTTTCTGCAATAA
CGGTATTTAATttggaaatttcgattttttgaaatgaagtCCTGTAGTAT
CTAACCCTTGGGGACCATTTTCTTCGAAATTTATGCATCAGGATCTATTA
TAAGAAGTTTAGAGGAtagcaaaaataattaatttttttattttgtattg
tacattattttatttttagtttttatagaTCAGAGCGAGTGGCCATaaat
agattttaaaaagattttcaaaccaAGTTCAAAGTTTATTTGGTGTCATA
AGCCTTCagccattttttttgttttcagcatTTTATAGTGGCC Run BLAST on NCBI protein sequence of TCONS_00002484-protein >TCONS_00002484-protein ID=TCONS_00002484-protein|Name=TCONS_00002484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MGYELTRFECDVDEELICPICSGVLEEPVQAPICEHAFCTACINEWLNLQ
ETCPVDRQSITSPELKPVPRILKNLLARLTIKCTNAEFGCESLIKLDVLN
HHLLECNHNPKRPVQCDKGCGLIVPLDEVSQHNCVRELHSIIHSQGEQIT
ELKEKAIDFQHQISEVKQQVTILTDVIRSFRLSASNLALGQPVNRSYADS
TSDEVIQWIQTLPQARVTRWGGMISTPDAVLQAVIRRSLSDSGCPPYILD
PLMENAHERRWSQGLSTLETRQMNRRRYEQYIARRIPGKQAVVVMACENR
HMGDFMVMEPGIVMIFAHGIE Run BLAST on NCBI transcript from alignment at sc0000020:5312..12894- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002484 ID=TCONS_00002484|Name=TCONS_00002484|organism=Clytia hemisphaerica|type=transcript|length=7583bp|location=Sequence derived from alignment at sc0000020:5312..12894- (Clytia hemisphaerica)
CTCTGAGCTGCTGAATGAACTCTACAGAACAAACTCAACTCTCCCCATTT
TGGTGAATTGAAGAATACTGAAGGATTATCTACANCTACAGAACAAACTC
AACTCTCCCCATTTTGGTGAATTGAAGAATACTGAAGGATTATCTACAAG
CTGGTATCATTTTTCTTTATCACTCACTTTGTTAAATTTAAGCTGGGCGC
CCATTTTGAGACTCAACAACAAAATTTTAGGTAGCTTCTATATTCTAATA
CTTCTAAGTTTGAACTCTCCCATTCTTGCATGAAGGTTTTTCCCCAGCAA
TTTTTAAGCACCCAACAATTATTTTTAGCCCTTTTTCTGTATTGAGCTTT
CAATTGTTCCAGACGACCGATCAATCAATGTTGATTCGATTGCCGAACAA
CGCAATCGAATATCAATCGAACGTAAAATTCTGGGTAAAATTCAATTGAT
TCAATTGATATTCGATTAGGTTTGATTGATATTCGATTAGGTTCGATTGA
TATTCGATGACGAAGTAGATATAACATCTACTTTGCTACCCTTACTATCA
CGACCCTGCCTATGCCCCGGACAGTCCGGGGCAAATGTCTGGGGTCTGAA
AAAAATAACTTTTTCCCCGGACCTACGTCCGGGGCTCCAATTTTTGCGCC
ATAAATTTACCCCGGACGTATATCGCCGAGCACACTTTAAACCCCCGGAC
ATTTTATCCAGGTATAAAACTCACCCCCTCACGCCCAAATATTTCAATGA
ATTAGAAAAAAGCCCGCGCGGTCAGCGATTCTATAAAAAGCGACTGCACG
GGCTGTCTGGGGCGTCCGGGGTAGTCTCTCAAAAACAAATAATACGGACC
CCGGGCACGCATCAAAAAAACCCCGGACTGTCCGGGGCATAGGCAGGGTC
GTTTACTATCTTGCAGAGAAAAGCCCGTTTGTCGCGTTGATTTGTCTTCG
ATACTTAACCTCCTTATATTCCAACCTCTAATTCTAAGACCTTTTATTTT
CACGCACCTCCTAAAATTTCCGTGTCATGTACGCTTTAATTTTCGCGCGC
CTCTGATTTTATCATTTTATCAAATTAGTGTCATTCTTTCAAATTTTAAG
ATAAAAAAAGACGAAAGTTAAATTCAGCTAAAACACTTAAAGTGTTTGAA
ATGGTTTGACTAAACAAAACGATAGGAGAAAGCAAAAAAAAAGAGATGGA
AAGGATAGAAAATTAATGTTACTATTTCATTTGACTTTCTTGTCTCCAAA
AGTTTGGTTCTTCTTAAAAAAGGTATATCATACAATGTATCTACAACATG
AAGAGAGGCGCGTTGAGCGAGTCCCCCGCCGCGACCCTTGTCCCGCAAAA
TCTAGTAGGACACTCAATAAGCTGTTTGAATTGAGTGTTCTCGTTTACAT
TTCACTGCCTTAACGTATAGTAACATCGCAACAGCCGAAGCTATAATTAG
CGAACACCATCGAGGAATCGACTTGGGTTACAATACTTAATTTGAGCAAT
CCGCCTTGAATGTCACTGACACTGGAACGAGGAAAATATCTGTTAACTGA
TCACATCTGCCATTTTATTAGCAAGGTTAAGTTAATAAGCAAGATTAAAG
GGGAAGTTAAGTGATTTTCAAGGTATATGTTTTTCCCCTGAAAACCAATC
CTAACATCATAGAATTCACGAAAATCTCAACTTCAATGTCTAAACATCGA
TATATCTTTCATAAACACACATACTCTTTTAGACGCAAAAACCGGTGTTT
AAAAGACCCCCTTTTGTTTAAAATTTCTCCTAATCTCTCTTTCGTGTGAC
GTCATTTGCTCCAGAAAGAATCTTTTTTAAACGACTTTGTAGTAGAAAAG
AGCTGAATCATAACTGATCAAAACTTTTTTCAACCCCTGATTTTTTCAAT
ATTTCATTACTTGATGTTTTATACGGTCTAACCATACTAGAATCCAAAAA
CCTTTTTTTTTTTCAATATAAATTCAATGGTATAACCCCAATATCTAGGT
ATGTGAAAGAATCTTTGTATTTTCAGTAAGGTCCAGTAAGCTTAGTAAGT
TTTGGACTTCTTTCCATGTGAAGAGGCCGTAAGTAAAGTTATAGTTATGA
AACACNCCTCTGATTAGCGGACAATTTTATTTTCCCCAGCCGTTTTCTAG
TCAAATCCTTATAAAAAAGTTTCCAAAAGGCGGACAGTCAATTAGCGGAC
CCTCCATTTAGCGGACAAAAATCTTTGCACGAAATGGCCAAAACCCTATA
TTTTCCTCTCTAATTAGCGGACATCGAGCATCAAACTGGTTATAGACTTC
AAATTTTAAGATACGAGTGATTCATTTAAATAATCTTCAACACTTTATAG
TTTAATTGTACAAATTGATTGTACAGGTTTGAAGTTTTGTCTTTATCAAT
AAATTTGTCTGGGTCATAGAATTGGGTAAATCATCGACACCTCAACACTT
ATGATTCAATAAAACTAATTTTTTTCATCTCAATAACTTTTCTCTTGTTC
TTTCATGACCTAGTGTCTCTAGAAAAGCACTTCGGACAGAAAATTTATAT
TTTTGACACCTTCACATTGCCTAACACCAAAATTAGAGCTCATAGTTTAA
AAGTTTCTAAAAGGCGGACACTTCTAATTAGCGGACACTAACCCGTTTCC
CCGATGGTGTCCGCTAATTAGAGGTTCCACTGTAGCCAGGTCTAGCAGAA
TCTCTTTACAAGTTTATCAGTACAGATTTTGTTTAAAAGAAAAATTTCTG
TTCGTCTTTTGGTGCAAATTACGTCGGAACAGATGCTCGTGCCATTCCTC
TTTAAAAAACGCGTTCTCTTTAAAAACTCATCTCGTAGAAAAAAGTGTTT
CGAACGAATAAAAAGTAACCTGAGGCACGTGATATTGTCATATAATGATG
ATAACAGCAAAAAATGGGTACCCTAGAAATTATTTAACTTCCCCTTTAAT
AGGGAGAACAACGGTGATATGGAAATCGCGAACCGGCCAAACAGCCATCG
TAGATTTTGCGGGCAACGTGACAGACAGCTGTCTTTTCTTCGATTCATAT
CATCTCGTTTAACGCTTCAAATGTTGAACCAGAATCAATGTTAATCAACA
GAATCAATTAGTCGAACCAGTTGAATGCATAAGCCAATCGAACGTAGTCG
AATCAATCGAATCAATCGAATCAATCGAATACATTAGTCAATCGAACGCA
ATCGAATCAATCGAGAAAATCGATTGGCATTCGATTGCGTTCGGCAATCG
AATTTCAATTATTCGATTGTGTTCAATTGTGTTCAATTGATGCGGCGTTC
GATTCGTTTGATTGACATCGTCTGGTAATCGAACTCCATCGAAGAATCAA
AGTTTGAGTGAAAAAATTAACCAAACTCCAAGTTTAAAAAGTTGTGAGTT
TTCAATCAATTTCACCTTCAATCAATGGGCTGTGGTTTGATCAGTTCGAT
AACGAGTTTGTTGGAAGAGTTTGTGCCATTCTGTCGTTGTAGATTAGCCA
GGTGGGTGTTTAAGTTAAAAACAGCAATTTTTTAACAATGAAATGTTGAG
TCAGCAGAAATGTGCTGTCCTTATAAGGGCAGTGTTTGAAAAATGTAACG
TTATATCGAAGGAAAGGTTTTTCAGATCTTTAAAAGTGATTTTTTAAATT
TTTCATTGCTCAATAACATACCGTCAACTGCTCCAACTTGGGACTATCTT
ACGCGACATGGGACGGCAATTCCACCACCATTTCACCAAACCTCCAAAGT
CATTTGATTTGAGTTTAATGAACCGCGTATTAGAAAATACACGATTTCTC
TTTCGCACCGAGTAGGCTTTTAAATCGAAATATGAAAAATCTGTAGTGGA
ACACGCGCAAATGTGAGTGTTTGACGTCACTCGCACGGAAAGTTACACAC
TCACTATTTGTTAATCTCATCAGGCAGTAGGCGGTTAGGCGGCGGGCGTT
CTCAATTCTCCATTCGGTGTCCGATCATTTTGAATGAAAACAAATGTTAA
AAAGGGCGCGCTATCAGTGAAAGTTATCAGGACATGTTATGACAGAAAGT
ATGATTGATAAGCTTGGAGGAGTTATCAAAACAAATTTATTGTCAAAGAG
ATTTAACAGTAAGTGAAAATACAGGCCAGTAGCAATGTTCTTTGAAACGA
CTTAGTAAATGTCGCATCGTCTGACCGACATAGCTCGCGTTACAGCGAGG
ACAACAAATTTGGTAAACTACAAAGCTTCTCATCTCTTTCTCAATAGTGG
GCTTTAAGGGCAATAAACATGATCTCAGTTTTCTCATTGTAAACACAATG
TTACAGGGCGCATTACATTTTCGTAGAGCATTCGAAAACTTTTCACTTAT
TTTGCCTTGATACTCAATATAAACTTTCATCTTTTCAACCCGGTCGACTT
TATCTTCAGACTCCTTTTCCTCTGGATGATCTATTTTCCTGATTGTTTTT
TTGAATCAAAGGTTCAAAAAACGATTTTGGATACTGGTTCTTAATCAACA
AAACTCGCGCTCTCTGTAACTAAGTTAAAAAGTTTTCTCTTTTGTTACAA
GAACAGTAAATACGATGCAGTAAACCAATAGATCTAAGGCATAATATTTC
ATCATTAGTCCAGTATTAGTTGGTTTACTGTACCAAGTTGACGTTAAGCA
GCAATTTGAACGGGTTATCTTCATGTCAAGAAAAGGAATAGAACATTCTT
CTTCCTCCTCAAGAGTAAATTTCAGTTCATTTTTGAGGCCATTGATCTCG
ACTAACTTTGATTGGATATTCTCTTTCTTTATATGGCGTAAAATATCATC
CATATAGCGATTATAAATTTTAGCATCTCCTCGAATTTGGTCATCGTATT
GACTCAACAATGTATTTACAAGAAGTGGGGCAGGAAGGCTACCNATATTC
TCTTTCTTTATCTCGCGTAAAATATCATCCATATAGCGATTATAAATTTT
AGCATCTCCTCGAATTTGGTCAACGTATTGACTCAACCATGCATTTGCCA
GGAGTGGGGCAGGAGGGCTACCCATGGCAAGGCCATCAACCTGATTGTTT
TTGATTTTGCACTTTATGATACTCATCCAATTCGAACCTAATCTAACACT
CACAATTTTTGAAGCAATAAGAGTCAATTAGTTCTATCAATCAGTAAAAA
GTTCCATTAGTTTGATGATACTAAATCCTCATTTCTTTCAAAAACTTTAT
TGTGACACACCTAAAAAGTGACAGAAAACGATTTTCGAAAAAAAAAATTT
TCCGGCGAAAATATGCCGGAAAAACTTTTTTTTGGTATTTTCTCGAGATT
TTATCATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAGCAATG
CCCAAAACATGGCTGAGTCCAATTTTTGAGAAAATATTTCTGGCCGAAAA
TTGCTATTTTCTGGATTTTCATTGGACTTTTTTNCGAATTTTTCGCTTAA
ATTCGATTATTTAAGCGAATTTATTTTTGAGAAGATCCCTTATAAATGGT
TGTTTTTTAATTCAAAAACATTATTAATAGCAATGCCCACCATCAAGCAA
GTTTTAATTTTCAATAAAATTGATTTTTGAAGCCAGAACTATTGACTGAC
TGATTTTTTTCATTTTTCTTCTCGCATTGCTATCTAACTTTCATCATCAG
GTAGGTCCATTTACATGTTGCTTGTTACATTTAAAAGTATCAAGAATACC
ATCAAATCTAATAGAATAGGTATCCAGACCTTTTTATATCAAGGTTTTGC
TCTTCAATGGAAGGAAAGGGGAGAAGGTCTTTGACCATTATAGTGGGGGA
GTTTCAACTTCTTTTCATTTAATTTTCAGTTGAGGAATGAAAAAATGGGA
TACGAATTAACAAGATTTGAATGTGATGTAGACGAGGAACTTATATGTCC
TATTTGCAGTGGTGTTTTGGAAGAACCAGTACAAGCACCTATCTGTGAAC
ATGCATTTTGTACAGCATGTATTAATGAATGGCTTAATCTACAGGAAACA
TGTCCAGTTGATAGACAATCTATTACTAGTCCTGAACTAAAACCAGTACC
ACGAATCCTTAAAAATCTGTTGGCACGATTGACTATAAAGTGTACTAATG
CAGAATTTGGATGTGAAAGCTTAATCAAGTTGGACGTGTTGAACCACCAT
TTATTGGAATGTAATCATAATCCAAAGCGACCGGTTCAATGTGATAAGGG
ATGTGGTTTGATTGTACCACTGGATGAGGTTTCACAACATAATTGCGTTC
GAGAGTTACATTCTATCATTCATTCACAAGGAGAACAAATAACAGAACTC
AAAGAAAAAGCTATTGATTTCCAACATCAAATTAGTGAAGTCAAACAGCA
AGTGACTATTCTAACAGATGTGATACGCAGTTTTCGGCTCTCTGCCAGTA
ATTTGGCCTTAGGCCAACCAGTGAACCGTAGTTACGCTGATAGTACTTCG
GATGAGGTTATACAATGGATACAAACATTACCTCAAGCTAGGGTTACACG
ATGGGGTGGTATGATCTCAACCCCTGATGCTGTACTCCAAGCAGTAATCA
GAAGGTCACTCTCAGATAGTGGTTGCCCACCTTACATTCTTGATCCATTG
ATGGAGAACGCACATGAGAGACGTTGGTCACAAGGGCTGAGTACATTGGA
AACTAGACAAATGAACAGAAGACGTTATGAACAATATATAGCACGTCGTA
TACCTGGAAAACAAGCTGTGGTAGTCATGGCATGTGAGAACCGACATATG
GGAGATTTCATGGTAATGGAGCCAGGCATTGTTATGATCTTTGCTCATGG
GATTGAATGACTTTTCTCGTTTATATGGTGGGGCTAGAAGTATTTTTTGT
GACCGCTAAGACCGCTACAGTTAAGCAATATTCTTTTTGGATCTGTATGT
TTTTGGATTGAATACAGATGCAGTACTGCTAATTGTATGGTAGGGAATAT
GGATGTATTACATTTTGGTATTTAATTGGTTAGTGTCTGACACCTTGCAC
ATTCAAGTATTTGTTGGTGAGCTTTTTAAACTATCGAGAACAAACTAGTC
GAGTTAAGTTTTGTTTAAATTTCGAAATTTGAAAGTTTTTAAACATGGAT
ATACACAGGCATTTTTTTCTTTGTTTGTTTTATACTGAGCGTTGAGTTGA
GCATAGTGAAAAATGAAAATATTGAAAAAATAATTTTGGGCAAAAAATGG
TTTTAGTCTATGACCTTCAAAATTTGTTATTTTCCTAATTGCAATGTCTT
TCTTTGTTTTTTCAACGGTTCTGAGTTTTTTCTGCAATAACGGTATTTAA
TTTGGAAATTTCGATTTTTTGAAATGAAGTCCTGTAGTATCTAACCCTTG
GGGACCATTTTCTTCGAAATTTATGCATCAGGATCTATTATAAGAAGTTT
AGAGGATAGCAAAAATAATTAATTTTTTTATTTTGTATTGTACATTATTT
TATTTTTAGTTTTTATAGATCAGAGCGAGTGGCCATAAATAGATTTTAAA
AAGATTTTCAAACCAAGTTCAAAGTTTATTTGGTGTCATAAGCCTTCAGC
CATTTTTTTTGTTTTCAGCATTTTATAGTGGCC Coding sequence (CDS) from alignment at sc0000020:5312..12894- >TCONS_00002484 ID=TCONS_00002484|Name=TCONS_00002484|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000020:5312..12894- (Clytia hemisphaerica)
ATGGGATACGAATTAACAAGATTTGAATGTGATGTAGACGAGGAACTTAT
ATGTCCTATTTGCAGTGGTGTTTTGGAAGAACCAGTACAAGCACCTATCT
GTGAACATGCATTTTGTACAGCATGTATTAATGAATGGCTTAATCTACAG
GAAACATGTCCAGTTGATAGACAATCTATTACTAGTCCTGAACTAAAACC
AGTACCACGAATCCTTAAAAATCTGTTGGCACGATTGACTATAAAGTGTA
CTAATGCAGAATTTGGATGTGAAAGCTTAATCAAGTTGGACGTGTTGAAC
CACCATTTATTGGAATGTAATCATAATCCAAAGCGACCGGTTCAATGTGA
TAAGGGATGTGGTTTGATTGTACCACTGGATGAGGTTTCACAACATAATT
GCGTTCGAGAGTTACATTCTATCATTCATTCACAAGGAGAACAAATAACA
GAACTCAAAGAAAAAGCTATTGATTTCCAACATCAAATTAGTGAAGTCAA
ACAGCAAGTGACTATTCTAACAGATGTGATACGCAGTTTTCGGCTCTCTG
CCAGTAATTTGGCCTTAGGCCAACCAGTGAACCGTAGTTACGCTGATAGT
ACTTCGGATGAGGTTATACAATGGATACAAACATTACCTCAAGCTAGGGT
TACACGATGGGGTGGTATGATCTCAACCCCTGATGCTGTACTCCAAGCAG
TAATCAGAAGGTCACTCTCAGATAGTGGTTGCCCACCTTACATTCTTGAT
CCATTGATGGAGAACGCACATGAGAGACGTTGGTCACAAGGGCTGAGTAC
ATTGGAAACTAGACAAATGAACAGAAGACGTTATGAACAATATATAGCAC
GTCGTATACCTGGAAAACAAGCTGTGGTAGTCATGGCATGTGAGAACCGA
CATATGGGAGATTTCATGGTAATGGAGCCAGGCATTGTTATGATCTTTGC
TCATGGGATTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002484-exon-sc0000020-1575043694:12812..12894 | TCONS_00002484-exon-sc0000020-1575043694:12812..12894 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1575043694:12742..12747 | TCONS_00002484-exon-sc0000020-1575043694:12742..12747 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1575043694:5312..7065 | TCONS_00002484-exon-sc0000020-1575043694:5312..7065 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1510915933:12812..12894 | TCONS_00002484-exon-sc0000020-1510915933:12812..12894 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1510915933:12742..12747 | TCONS_00002484-exon-sc0000020-1510915933:12742..12747 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1510915933:5312..7065 | TCONS_00002484-exon-sc0000020-1510915933:5312..7065 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1491911889:12812..12894 | TCONS_00002484-exon-sc0000020-1491911889:12812..12894 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1491911889:12742..12747 | TCONS_00002484-exon-sc0000020-1491911889:12742..12747 | Clytia hemisphaerica | exon |
| TCONS_00002484-exon-sc0000020-1491911889:5312..7065 | TCONS_00002484-exon-sc0000020-1491911889:5312..7065 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:5312..12894 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016567 | protein ubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
| GO:0031386 | protein tag |
| GO:0016881 | acid-amino acid ligase activity |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016567 |
protein ubiquitination |
| molecular_function |
GO:0016881 |
acid-amino acid ligase activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0031386 |
protein tag |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
BLAST of TCONS_00002484 vs. Swiss-Prot (Human)
Match: RNF41 (E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1 SV=2) HSP 1 Score: 413.305 bits (1061), Expect = 9.243e-140 Identity = 190/321 (59.19%), Postives = 249/321 (77.57%), Query Frame = 3
Query: 105 MGYELTRFECDVDEELICPICSGVLEEPVQAPICEHAFCTACINEWLNLQETCPVDRQSITSPELKPVPRILKNLLARLTIKCTNAEFGCESLIKLDVLNHHLLECNHNPKRPVQCDKGCGLIVPLDEVSQHNCVRELHSIIHSQGEQITELKEKAIDFQHQISEVKQQVTILTDVIRSFRLSASNLALGQPVNRSYADSTSDEVIQWIQTLPQARVTRWGGMISTPDAVLQAVIRRSLSDSGCPPYILDPLMENAHERRWSQGLSTLETRQMNRRRYEQYIARRIPGKQAVVVMACENRHMGDFMVMEPGIVMIFAHGIE 1067
MGY++TRF+ DVDE+LICPICSGVLEEPVQAP CEHAFC ACI +W + Q+TCPVDR +T L+PVPRI++N+L++L I C NA FGC ++++LD L HL +C HNPKRPV C++GCGL +P DE+ HNC++ L S++ Q +I EL++ + + +HQ++E K+ + +L +R+ R NL Q + + +E+++W+ +L ARVTRWGGMISTPDAVLQAVI+RSL +SGCP I++ L+ENAHER W QGL+TLETRQMNRR YE Y+A+RIPGKQAVVVMACEN+HMGD MV EPG+VMIFAHG+E
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNL---QNLEETI---EYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 315
The following BLAST results are available for this feature:
|
