TCONS_00001936-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001936-protein
Unique Name	TCONS_00001936-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	625

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001936-protein ID=TCONS_00001936-protein|Name=TCONS_00001936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp
MTLFGCCRGDPDENLPLTQQNQKKTSNQNVGTVNGDETKETWGNKAEFLL
ASIGLAVGLGNIWRFPYLCQKNGGGAFLIPYLLMMIMEGFPLFFIEYAIG
QRFKQSAVGCWGKIHPALRGIGVGSIILSGFLCIYYVAVIAWSFFYLFVS
MRKDLPWERNNCPSSLQLLNNSVTNETCCTRDPEAYYFYVTALNAASSIE
STDGKGMSWQLILCLLLSWVLVYACVVKGVKSSGKAVYFTATFPYLILII
LLIAGALLTGADIGLVAFFKPDFSRLLDPKIWLDAAGQMFFTLSIGFGAL
LAFASYMPTKNNCMKDAYTVVSINCFTSILAGIVVFSILGHREQETGQSA
IESGSGPGLVFITFANAFLQMDGAPFWAVCFFVMLILLGIDSEFGTFEAF
VYPFYDMKWITMNKSLFSALVAIGMFLIGLCFVSPVGYYVFQIFDDYSLS
FGLLAVGFFQTISVSWVYGNDKFANDIEYMTGRRPLKLWLICWKYISPIV
IMIIIISNIYLLSIGEMTYKAYVGCFAGFAEPVIEKEYPAWAKFVIIVLI
CLPIAPIFIYFIKDLVQNPQEWKDGFQNRLCHPIEYAFDPSDYDLNRRYH
IEDLTMTEKDQNNAASAEEEHEIKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001002	XLOC_001002	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001936	TCONS_00001936	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 47..68 score: 67.36 coord: 450..470 score: 36.07 coord: 490..510 score: 27.01 coord: 76..95 score: 51.97 coord: 236..253 score: 62.57 coord: 120..146 score: 37.52 coord: 318..338 score: 44.42 coord: 371..390 score: 50.74
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 39..566 e-value: 2.6E-168 score: 560.9
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 63..77
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 38..570 score: 87.505
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..35
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 39..565

Blast

[Close]

BLAST of TCONS_00001936-protein vs. Swiss-Prot (Human)
Match: S6A18 (Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2)

HSP 1 Score: 399.438 bits (1025), Expect = 1.966e-131
Identity = 223/577 (38.65%), Postives = 319/577 (55.29%), Query Frame = 0

Query:   35 GDETKETWGNKAEFLLASIGLAVGLGNIWRFPYLCQKNGGGAFLIPYLLMMIMEGFPLFFIEYAIGQRFKQSAVGCWGKIHPALRGIGVGSIILSGFLCIYYVAVIAWSFFYLFVSMRKDLPWERNNCPSSLQLLNNSVTNETCCTRDPEAYYFYVTALNAASSIESTDGKGMSWQLILCLLLSWVLVYACVVKGVKSSGKAVYFTATFPYLILIILLIAGALLTGADIGLVAFFKPDFSRLLDPKIWLDAAGQMFFTLSIGFGALLAFASYMPTKNNCMKDAYTVVSINCFTSILAGIVVFSILGHREQETGQSAIE-----------------------------------------------------SGSGPGLVFITFANAFLQMDGAPFWAVCFFVMLILLGIDSEFGTFEAFVYPFYDM----KWITMNKSLFSALVAIGMFLIGLCFVSPVGYYVFQIFDDYSLSFGLLAVGFFQTISVSWVYGNDKFANDIEYMTGRRPLKLWLICWKYISPIVIMIIIISNIYLLSIGEMTYKAYVGCFAGFAEPVIEKEYPAWAKFVIIVLICLPI 554
            GDE +  W NKA++LL+  G AVGLGNIWRFPYLCQ  GGGAFLIPY++ ++ EG P+F +E AIGQR ++ +VG W  I P L G+G+G + LS  + +YY  ++AW  +YL  S +  LPW  ++CP  L   N +   E C      +Y++Y   LN  + I   D   + W L++CL  SW +VY CV++G++++GK +YFTA FPYL+L I LI G  L GA  GL+  F P+   L +P++WLDAA Q+FF+LS+ FG  +AFASY   +N+C KDA  +  +N  TS+ A I VFS+LG +     +  ++                                                     S SGPGL F+ F    L M GAP WA+ FF ML  LG+ + FGT EA + P  D+    +W+   K   + LV +  FL   CF    G Y  +IFD+++ S  LL + F + + V +VYG  +F +DI +MTGRRP   W + W+ +SP+ ++ I ++ I LL    + YKA+   +  F     EK YP WA+   ++L  LP+
Sbjct:   15 GDE-RPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPW--SSCPPDL---NRTGFVEECQGSSAVSYFWYRQTLNITADIN--DSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLPRWVP--KEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMTGRRPSPYWRLTWRVVSPL-LLTIFVAYIILLFWKPLRYKAWNPKYELFPS-RQEKLYPGWARAACVLLSLLPV 579

The following BLAST results are available for this feature:

BLAST of TCONS_00001936-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001936-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
S6A18	1.966e-131	38.65	Sodium-dependent neutral amino acid transporter B(...	[more]

You are here

TCONS_00001936-protein (polypeptide) - C. hemisphaerica

ZOOM

x 1

POSITION

0

ZOOM

x 1

POSITION

0