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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001936 ID=TCONS_00001936|Name=TCONS_00001936|organism=Clytia hemisphaerica|type=transcript|length=2961bpRun BLAST on NCBI protein sequence of TCONS_00001936-protein >TCONS_00001936-protein ID=TCONS_00001936-protein|Name=TCONS_00001936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MTLFGCCRGDPDENLPLTQQNQKKTSNQNVGTVNGDETKETWGNKAEFLLRun BLAST on NCBI transcript from alignment at sc0000012:513974..529161- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001936 ID=TCONS_00001936|Name=TCONS_00001936|organism=Clytia hemisphaerica|type=transcript|length=15188bp|location=Sequence derived from alignment at sc0000012:513974..529161- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:513974..529161- >TCONS_00001936 ID=TCONS_00001936|Name=TCONS_00001936|organism=Clytia hemisphaerica|type=CDS|length=16902bp|location=Sequence derived from alignment at sc0000012:513974..529161- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001936 vs. Swiss-Prot (Human)
Match: S6A18 (Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2) HSP 1 Score: 323.939 bits (829), Expect = 1.366e-97 Identity = 221/577 (38.30%), Postives = 317/577 (54.94%), Query Frame = 2
Query: 302 GDETKETWGNKAEFLLASIGLAVGLGNIWRFPYLCQKNGGGAFLIPYLLMMIMEGFPLFFIEYAIGQRFKQSAVGCWGKIHPALRGIGVGSIILSGFLCIYYVAVIAWSFFYLFVSMRKDLPWERNNCPSSLQLLNNSVTNETCCTRDPEAYYFYVTALNAASSIESTDGKGMSWQXXXXXXXXXXXVYACXXXXXXXXXXAVYFTATFPYXXXXXXXXXXXXXXXXXXXXVAFFKPDFSRLLDPKIWLDAAGQMFFTLSIGFGALLAFASYMPTKNNCMKDAYTVVSINCFTSILAGIVVFSILGHREQETGQSAIE-----------------------------------------------------SGSGPGLVFITFANAFLQMDGAPFWAVCFFVMLILLGIDSEFGTFEAFVYPFYDM----KWITMNKSLFSALVAIGMFLIGLCFVSPVGYYVFQIFDDYSLSFGLLAVGFFQTISVSWVYGNDKFANDIEYMTGRRPLKLWLICWKYXXXXXXXXXXXXXXXXXXXGEMTYKAYVGCFAGFAEPVIEKEYPAWAKFVIIVLICLPI 1861
GDE + W NKA++LL+ G AVGLGNIWRFPYLCQ GGGAFLIPY++ ++ EG P+F +E AIGQR ++ +VG W I P L G+G+G + LS + +YY ++AW +YL S + LPW ++CP LN + E C +Y++Y LN + I D + W L++CL SW +VY CV++G++++GK +YFTA FPYL+L I LI G L GA GL+ F P+ L +P++WLDAA Q+FF+LS+ FG +AFASY +N+C KDA + +N TS+ A I VFS+LG + + ++ S SGPGL F+ F L M GAP WA+ FF ML LG+ + FGT EA + P D+ +W+ K + LV + FL CF G Y +IFD+++ S LL + F + + V +VYG +F +DI +MTGRRP W + W+ + +++ I ++ I LL + YKA+ + F EK YP WA+ ++L LP+
Sbjct: 15 GDE-RPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPW--SSCPPD---LNRTGFVEECQGSSAVSYFWYRQTLNITADIN--DSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLPRWVP--KEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMTGRRPSPYWRLTWR-VVSPLLLTIFVAYIILLFWKPLRYKAWNPKYELFPSRQ-EKLYPGWARAACVLLSLLPV 579 The following BLAST results are available for this feature:
BLAST of TCONS_00001936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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