Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00001210-protein ID=TCONS_00001210-protein|Name=TCONS_00001210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp MSDAEGDDVPTAPAPGGPMDINTALQEILKMAMVHDGLARGLREAVKALD KRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCK IDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQSS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular |
GO:0005840 | ribosome |
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006412 |
translation |
cellular_component |
GO:0005622 |
intracellular |
cellular_component |
GO:0005840 |
ribosome |
molecular_function |
GO:0003735 |
structural constituent of ribosome |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000530 | Ribosomal protein S12e | PRINTS | PR00972 | RIBSOMALS12E | coord: 83..104 score: 76.45 coord: 42..58 score: 65.24 coord: 108..121 score: 82.47 coord: 28..41 score: 66.23 |
IPR000530 | Ribosomal protein S12e | PROSITE | PS01189 | RIBOSOMAL_S12E | coord: 24..42 |
IPR004038 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 | PFAM | PF01248 | Ribosomal_L7Ae | coord: 24..117 e-value: 4.8E-30 score: 103.0 |
IPR029064 | 50S ribosomal protein L30e-like | GENE3D | 3.30.1330.30 | | coord: 22..140 e-value: 9.1E-39 score: 131.7 |
IPR029064 | 50S ribosomal protein L30e-like | SUPERFAMILY | 55315 | L30e-like | coord: 17..137 |
Blast
BLAST of TCONS_00001210-protein vs. Swiss-Prot (Human)
Match: RS12 (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3) HSP 1 Score: 209.92 bits (533), Expect = 2.517e-71 Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 0 Query: 14 APGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQ 139
A GG MD+NTALQE+LK A++HDGLARG+REA KALDKR A LC+LA+NCDE MYVKL+EALCAEH INLIKVDDNKKLGEW GLCKID+EG RKVVGCSCVVVKD+GKESQA DV+ EYFK ++
Sbjct: 7 AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK 132
The following BLAST results are available for this feature:
BLAST of TCONS_00001210-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match Name | E-value | Identity | Description | |
RS12 | 2.517e-71 | 78.57 | 40S ribosomal protein S12 OS=Homo sapiens GN=RPS12... | [more] |
back to top
|