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TCONS_00001210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001210
Unique NameTCONS_00001210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001210 ID=TCONS_00001210|Name=TCONS_00001210|organism=Clytia hemisphaerica|type=transcript|length=997bp
GGTAAAAAAGGGACCAACGAAAAGACTAGTCTATTATAAAATTTAACTTA
TCTCTTATCTTTAGGTCAAAGATGCTTGGTAATTGACTGGTGATCCTGGA
TTTCAAGCAGATTGTGCCGCCATGGCAGAATGCGGACGTTGTTGGTTATT
TATATCATTTGAAGTCTCTTTCAATTTTACACCCATTCTAACACGGTGCT
CATTAAGGAATTCCAGCAATCAAAATGTCTGATGCGGAAGGAGATGATGT
GCCCACAGCTCCTGCTCCAGGAGGTCCCATGGACATTAACACTGCCCTtc
aagaaatcttgaaaatggcTATGGTTCATGATGGACTTGCTCGCGGTCTT
CGTGAAGCTGTAAAAGCCCTTGATAAACGAACTGCCTTACTTTGCATCCT
GGCAAACAACTGTGATGAACAGATGTATGTCAAACTTATTGAAGCCTTGT
GTGCTGAGCATAGCATTAATTTAATTAAGGTTGATGACAATAAGAAACTT
GGTGAATGGGCCGGTTTATGCAAAATTGACAAAGAAGGCAATGCCAGAAA
AGTTGTTGGATGCAGCTGTGTTGTTGTAAAGGACTGGGGTAAAGAATCAC
AAGCTCACGATGTGCTCATGGAATACTTCAAGGCTCAGCAATCATCTTAG
ACAAAATGTACCAtctttaaaaagacaaaaaaaactgaataacaTTGACA
CGCTTTGTTTTCATTCATATTGCCTTCTTTCTCCAGTACACTGTTCTACA
GGGGGGGCatgcagttactacaagacagtgtGACatttactaccgtggtg
gtactgtattcagcagttatgaaaacagttactacagtgtagtaactgct
gtctgggggtggtgccaaacactaaaactgGCACTTTTGGTGTAAttagt
gcttatattttaattctttttaaagaactttcaaaaattctttgttaaaa
aaatatttttgttataaatagacgaaaaaaaatttgaaatttttctt
Run BLAST on NCBI

protein sequence of TCONS_00001210-protein

>TCONS_00001210-protein ID=TCONS_00001210-protein|Name=TCONS_00001210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MSDAEGDDVPTAPAPGGPMDINTALQEILKMAMVHDGLARGLREAVKALD
KRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCK
IDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQSS
Run BLAST on NCBI

transcript from alignment at sc0000007:1052163..1055185-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001210 ID=TCONS_00001210|Name=TCONS_00001210|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at sc0000007:1052163..1055185- (Clytia hemisphaerica)
GGTAAAAAAGGGACCAACGAAAAGACTAGTCTATTATAAAATTTAACTTA TCTCTTATCTTTAGGTCAAAGATGCTTGGTAATTGACTGGTGATCCTGGA TTTCAAGCAGATTGTGCCGCCATGGCAGAATGCGGACGTTGTTGGTTGTA ATATATTTTCGGATCGGATACTAGTTGGCTAATTAGTCTGTTGAGAAACG GTGTTTATAAATCTTCAAAACATGTTTTTTTTACTTGAATTAATCTTTTG TATTCAAAAGCTTTCATGAATCCTCTAGAAAGCAAAAAAAATTTCTAAAA ATTACAATTTTTATTAAAAAAATCAATGGGTAAATGAATAAACAAAATGA AAATGGTTAATGGATTGAAATGAGCAATTGACAGAACAAATTCCATTGCT GAGCTTCTAGACCCATAATTTCAACGAAAAAGGTCCTTTGTTGTTGTCTT GGGGTAGACTAGAGTACGAAAAATACGACGGCCGAAAATTATGTCGTAAG AGATTAGGGTCAGGTATTCAATTTGAGCTTGTTTCGTATGCCGTAAAATT AGTAATTCATTTCTCGTGTGAGATTTATATCATTTGAAGTCTCTTTCAAT TTTACACCCATTCTAACACGGTGCTCATTGTAAGTAATTTTATGAATCAA TCTGTTAATATCTCCTAGCTTTCTTACTCTTCTCGGCTACATATTTCTAA TGTTCAACGTGACTCGTGTTTAACCCAGACNGCTTTCTTACTCTTCTCGG CTACATATTTCTAATGTTCAACGTGACTCCTGTTTAACCCAGACCACTTA TTCATTTTTATTATCTCTGATCTTTCAGAAGGAATTCCAGCAATCAAAAT GTCTGATGCGGAAGGGTGAGTTTCTTTATTTAATTCTGTTGTTGTCACTT TGTTACCAATACCAAGCTAGTCTCGATCGAACCGATATCTTAAAGTTACT TCTATTTATTTGAAAACTAAAAAATTTAATTAACCTGAGTTTGTGCTTAC ACACTACAGTGTTGACCATATACATATTTATTTGTCCTTATGTCTTTGTT TGAGGATTACAAATTTTCCATTACAGAGATGATGTGCCCACAGCTCCTGC TCCAGGAGGTCCCATGGACATTAACACTGCCCTTCAAGAAATCTTGAAAA TGGCTATGGTTCATGATGGACTTGCTCGCGGTCTTCGTGAAGCTGTAAAA GCCCTTGATAAACGAACTGCCTTACTTTGCATCCTGGCAAACAACTGTGA TGAACAGATGTATGTCAAACTTATTGAAGCCTTGTGTGCTGAGCATAGCA TTAATTTAATTAAGGTGAGTATCAATGGAAACATGTCCATAAATGTTGTA AAATACTTATTGGTCTCTTTCAGAAAAAGGGCCATTCCAGAATTTGTCAG TAACAGGGGCGGGCAACACAGGATTTCTGAGGGTAAAAGTTTTCACCAAA ATTTAAAATTTCCAAGGCAAGAGAAGAAAATATATGAATTTTCGATGCAT TTTGCAAAAGTACATGGATTTTCATCAGAATTTCCAACCACCCCTGGGAA AGAAAAATTATTCAGAGGCTAGAAGAAAATTTAAAATGCACGTCATCCGA CGGGAGTAACAAAAATTTTCTGGAATGGCCCAAATCGATTATAGGGGTGG ACTGAATTCCCATGGTTTACCACCCTTTAGAGCTATTTTTTTTCAATTGA CTTGGTACCATGAGATTGGGTAACTTTCATCAGTGGAGGCTAAAATGCAA AGCCCTCAAATGAATGACCTGGCTGGTCATCAAAATACGACTATGCAGCT CTACTCTACCATTTATGTTTTGATTTAACTTTGTATTTTAATGACCAGCC AGGTCATCATTCAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACC CGATCTCATGGTACACCCTTTTCTAAAAAACAGATGGGATAAATTATTAT ATTAGTTGATTATTACTGAATAGGATTATTATAGTTAATGAGATGTATAT TTTGGGCTTGACACAACTCTTGGTATGTATTTACAGTATTTTCCCTGTGC TACACACTTGTGATGAGTTAGCGTAGGCTGATACCTTGATGACTATTGCC TACCATCACCCATAACCTGAAGTGTGTTTTGGTCATCTTAGAATGACGTC AAATTTCCCATGTTTTGTAAAATTATCTTAAGGGATACCAAAGTTGCGGG AGTTGAAGGCCTTTTATAAACCTGTATGCAGAGAAACAAAGCCTCACTGT ACTAGAATCACCGCCTGTGATGTTGACCTTAGTTATCTGGAATTATGAAT CTGCTTTCGTGAAATAGGTTGATGACAATAAGAAACTTGGTGAATGGGCC GGTTTATGCAAAATTGACAAAGAAGGCAATGCCAGAAAAGTTGTTGGATG CAGCTGTGTTGTTGTAAAGGTAAAATATTTGTAATTAGTTGATCAAATTC AGATATGTAATTTGAGAGAATGATGAGTTAGCTCTTCTGATTTAAACATG GTGACTATAGCCTACCATCACCCATAAACTGACTCTCTGTTTGATGTTAA CTTTAAGGAATTATTCAAAACTCTCCAGCTAAATCATTTCTTTTACCTTT AATTCAGGACTGGGGTAAAGAATCACAAGCTCACGATGTGCTCATGGAAT ACTTCAAGGCTCAGCAATCATCTTAGACAAAATGTACCATCTTTAAAAAG ACAAAAAAAACTGAATAACATTGACACGCTTTGTTTTCATTCATATTGCC TTCTTTCTCCAGTACACTGTTCTACAGGGGGGGCATGCAGTTACTACAAG ACAGTGTGACATTTACTACCGTGGTGGTACTGTATTCAGCAGTTATGAAA ACAGTTACTACAGTGTAGTAACTGCTGTCTGGGGGTGGTGCCAAACACTA AAACTGGCACTTTTGGTGTAATTAGTGCTTATATTTTAATTCTTTTTAAA GAACTTTCAAAAATTCTTTGTTAAAAAAATATTTTTGTTATAAATAGACG AAAAAAAATTTGAAATTTTTCTT

Coding sequence (CDS) from alignment at sc0000007:1052163..1055185-

>TCONS_00001210 ID=TCONS_00001210|Name=TCONS_00001210|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000007:1052163..1055185- (Clytia hemisphaerica)
GACTGGGGTAAAGAATCACAAGCTCACGATGTGCTCATGGAATACTTCAA
GGCTCAGCAATCATCTTAGGTTGATGACAATAAGAAACTTGGTGAATGGG
CCGGTTTATGCAAAATTGACAAAGAAGGCAATGCCAGAAAAGTTGTTGGA
TGCAGCTGTGTTGTTGTAAAGAGATGATGTGCCCACAGCTCCTGCTCCAG
GAGGTCCCATGGACATTAACACTGCCCTTCAAGAAATCTTGAAAATGGCT
ATGGTTCATGATGGACTTGCTCGCGGTCTTCGTGAAGCTGTAAAAGCCCT
TGATAAACGAACTGCCTTACTTTGCATCCTGGCAAACAACTGTGATGAAC
AGATGTATGTCAAACTTATTGAAGCCTTGTGTGCTGAGCATAGCATTAAT
TTAATTAAGATGTCTGATGCGGAAGGGACTGGGGTAAAGAATCACAAGCT
CACGATGTGCTCATGGAATACTTCAAGGCTCAGCAATCATCTTAGGTTGA
TGACAATAAGAAACTTGGTGAATGGGCCGGTTTATGCAAAATTGACAAAG
AAGGCAATGCCAGAAAAGTTGTTGGATGCAGCTGTGTTGTTGTAAAGAGA
TGATGTGCCCACAGCTCCTGCTCCAGGAGGTCCCATGGACATTAACACTG
CCCTTCAAGAAATCTTGAAAATGGCTATGGTTCATGATGGACTTGCTCGC
GGTCTTCGTGAAGCTGTAAAAGCCCTTGATAAACGAACTGCCTTACTTTG
CATCCTGGCAAACAACTGTGATGAACAGATGTATGTCAAACTTATTGAAG
CCTTGTGTGCTGAGCATAGCATTAATTTAATTAAGATGTCTGATGCGGAA
GGGACTGGGGTAAAGAATCACAAGCTCACGATGTGCTCATGGAATACTTC
AAGGCTCAGCAATCATCTTAGGTTGATGACAATAAGAAACTTGGTGAATG
GGCCGGTTTATGCAAAATTGACAAAGAAGGCAATGCCAGAAAAGTTGTTG
GATGCAGCTGTGTTGTTGTAAAGAGATGATGTGCCCACAGCTCCTGCTCC
AGGAGGTCCCATGGACATTAACACTGCCCTTCAAGAAATCTTGAAAATGG
CTATGGTTCATGATGGACTTGCTCGCGGTCTTCGTGAAGCTGTAAAAGCC
CTTGATAAACGAACTGCCTTACTTTGCATCCTGGCAAACAACTGTGATGA
ACAGATGTATGTCAAACTTATTGAAGCCTTGTGTGCTGAGCATAGCATTA
ATTTAATTAAGATGTCTGATGCGGAAGGGACTGGGGTAAAGAATCACAAG
CTCACGATGTGCTCATGGAATACTTCAAGGCTCAGCAATCATCTTAGGTT
GATGACAATAAGAAACTTGGTGAATGGGCCGGTTTATGCAAAATTGACAA
AGAAGGCAATGCCAGAAAAGTTGTTGGATGCAGCTGTGTTGTTGTAAAGA
GATGATGTGCCCACAGCTCCTGCTCCAGGAGGTCCCATGGACATTAACAC
TGCCCTTCAAGAAATCTTGAAAATGGCTATGGTTCATGATGGACTTGCTC
GCGGTCTTCGTGAAGCTGTAAAAGCCCTTGATAAACGAACTGCCTTACTT
TGCATCCTGGCAAACAACTGTGATGAACAGATGTATGTCAAACTTATTGA
AGCCTTGTGTGCTGAGCATAGCATTAATTTAATTAAGATGTCTGATGCGG
AAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000657XLOC_000657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001210-exon-sc0000007-1575043694:1055039..1055185TCONS_00001210-exon-sc0000007-1575043694:1055039..1055185Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1575043694:1054557..1054613TCONS_00001210-exon-sc0000007-1575043694:1054557..1054613Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1575043694:1054321..1054357TCONS_00001210-exon-sc0000007-1575043694:1054321..1054357Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1575043694:1053872..1054109TCONS_00001210-exon-sc0000007-1575043694:1053872..1054109Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1575043694:1052767..1052868TCONS_00001210-exon-sc0000007-1575043694:1052767..1052868Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1575043694:1052163..1052578TCONS_00001210-exon-sc0000007-1575043694:1052163..1052578Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1055039..1055185TCONS_00001210-exon-sc0000007-1510915933:1055039..1055185Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1054557..1054613TCONS_00001210-exon-sc0000007-1510915933:1054557..1054613Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1054321..1054357TCONS_00001210-exon-sc0000007-1510915933:1054321..1054357Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1053872..1054109TCONS_00001210-exon-sc0000007-1510915933:1053872..1054109Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1052767..1052868TCONS_00001210-exon-sc0000007-1510915933:1052767..1052868Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1510915933:1052163..1052578TCONS_00001210-exon-sc0000007-1510915933:1052163..1052578Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1055039..1055185TCONS_00001210-exon-sc0000007-1491911889:1055039..1055185Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1054557..1054613TCONS_00001210-exon-sc0000007-1491911889:1054557..1054613Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1054321..1054357TCONS_00001210-exon-sc0000007-1491911889:1054321..1054357Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1053872..1054109TCONS_00001210-exon-sc0000007-1491911889:1053872..1054109Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1052767..1052868TCONS_00001210-exon-sc0000007-1491911889:1052767..1052868Clytia hemisphaericaexon
TCONS_00001210-exon-sc0000007-1491911889:1052163..1052578TCONS_00001210-exon-sc0000007-1491911889:1052163..1052578Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001210-proteinTCONS_00001210-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1052163..1055185 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
993.575 1020.95 1163.48 1322.6 590.821 441.734 533.452 586.308 1306.55 1136.29 1215.87 1606.39 2591.74 2432.24 2307.29 2061.03 2483.65 2410.11 1017.26 1067.6 2305.67 2234.93 1665.61 1585.01 1032.71 1084.29 2061.39 2062.57 1434.84 1500.49
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
BLAST of TCONS_00001210 vs. Swiss-Prot (Human)
Match: RS12 (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.321e-66
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 3
Query:  264 APGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQ 641
            A GG MD+NTALQE+LK A++HDGLARG+REA KALDKR A LC+LA+NCDE MYVKL+EALCAEH INLIKVDDNKKLGEW GLCKID+EG  RKVVGCSCVVVKD+GKESQA DV+ EYFK ++
Sbjct:    7 AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK 132          
The following BLAST results are available for this feature:
BLAST of TCONS_00001210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS121.321e-6678.5740S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
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