TCONS_00001210-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001210-protein
Unique NameTCONS_00001210-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001210-protein ID=TCONS_00001210-protein|Name=TCONS_00001210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MSDAEGDDVPTAPAPGGPMDINTALQEILKMAMVHDGLARGLREAVKALD
KRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCK
IDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000657XLOC_000657Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001210TCONS_00001210Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 83..104
score: 76.45
coord: 42..58
score: 65.24
coord: 108..121
score: 82.47
coord: 28..41
score: 66.23
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 24..42
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 24..117
e-value: 4.8E-30
score: 103.0
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 22..140
e-value: 9.1E-39
score: 131.7
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 17..137

Blast
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BLAST of TCONS_00001210-protein vs. Swiss-Prot (Human)
Match: RS12 (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 2.517e-71
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 0 
Query:   14 APGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQ 139
            A GG MD+NTALQE+LK A++HDGLARG+REA KALDKR A LC+LA+NCDE MYVKL+EALCAEH INLIKVDDNKKLGEW GLCKID+EG  RKVVGCSCVVVKD+GKESQA DV+ EYFK ++
Sbjct:    7 AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK 132
The following BLAST results are available for this feature:
BLAST of TCONS_00001210-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS122.517e-7178.5740S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
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