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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000994-protein ID=TCONS_00000994-protein|Name=TCONS_00000994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MASPNEDEKRVALQEKIKEQGEVVRKLKSSKDQTDEIKQQIKDEVAKLLE LKAQLGGNNTKKKFVLKTPKGTRDYGPKQMAIREKVFKIITETFQKHGAV EINTPVMELKETLTGKYGEDSKLIYDLKDQGGEILALRYDLTVPFARYVA MNKVEKIKRYHIARVYRRDNPAMTRGRYREFYQCDYDVAGQYDPLIPDAE CVKIVAEILLKLELGDFVIKVNHRKVLDGIFAISGVPECQFRTICSSVDK LDKTPWEEVRNEMVKEKGLSEDIADKIYEYVQYKGGPELIEKLLNDEKFT NNKSAKEGVEDMKLLFKYCELFGCLQNVSFDLSLARGLDYYTGVIYEAVL TGLPKELMNGKTDKKKDKKKEGEDEQVGVGSVAGGGRYDDLVGMFDSKGK KVPCVGVSLGIERIFSIMEKKQELSEEKARITKTKVLVVSGQKKMLEERL KLVNELWSQNIEAEVTFKANPKLLNQFQYCEDNAIPLCAVIGDSELEKGV VMLRNMKTREQNEVKRDELAEEIRKLCVE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term | Definition |
GO:0006418 | tRNA aminoacylation for protein translation |
GO:0006427 | histidyl-tRNA aminoacylation |
Vocabulary: Molecular Function
Term | Definition |
GO:0004812 | aminoacyl-tRNA ligase activity |
GO:0005524 | ATP binding |
GO:0004821 | histidine-tRNA ligase activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0005737 | cytoplasm |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006427 |
histidyl-tRNA aminoacylation |
biological_process |
GO:0006418 |
tRNA aminoacylation for protein translation |
cellular_component |
GO:0005737 |
cytoplasm |
molecular_function |
GO:0004812 |
aminoacyl-tRNA ligase activity |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0004821 |
histidine-tRNA ligase activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 34..54 |
None | No IPR available | COILS | Coil | Coil | coord: 509..529 |
None | No IPR available | PFAM | PF13393 | tRNA-synt_His | coord: 71..360 e-value: 2.7E-34 score: 118.8 |
None | No IPR available | GENE3D | 1.10.287.10 | | coord: 6..56 e-value: 2.6E-14 score: 52.4 |
None | No IPR available | GENE3D | 3.30.930.10 | | coord: 57..429 e-value: 5.1E-118 score: 393.5 |
None | No IPR available | CDD | cd00773 | HisRS-like_core | coord: 79..419 e-value: 6.88215E-93 score: 285.651 |
None | No IPR available | SUPERFAMILY | 55681 | Class II aaRS and biotin synthetases | coord: 67..418 |
IPR000738 | WHEP-TRS domain | SMART | SM00991 | WHEP_TRS_a_2_a_3_a | coord: 13..70 e-value: 3.3E-10 score: 49.9 |
IPR000738 | WHEP-TRS domain | PFAM | PF00458 | WHEP-TRS | coord: 13..56 e-value: 2.1E-10 score: 40.5 |
IPR000738 | WHEP-TRS domain | PROSITE | PS51185 | WHEP_TRS_2 | coord: 9..69 score: 11.703 |
IPR004516 | Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit | PIRSF | PIRSF001549 | His-tRNA_synth | coord: 62..527 e-value: 3.4E-124 score: 412.8 coord: 3..67 e-value: 83.0 score: -0.4 |
IPR004154 | Anticodon-binding | GENE3D | 3.40.50.800 | | coord: 431..529 e-value: 8.9E-24 score: 83.0 |
IPR004154 | Anticodon-binding | PFAM | PF03129 | HGTP_anticodon | coord: 436..525 e-value: 2.6E-16 score: 59.4 |
IPR004154 | Anticodon-binding | SUPERFAMILY | 52954 | Class II aaRS ABD-related | coord: 432..526 |
IPR015807 | Histidine-tRNA ligase | TIGRFAM | TIGR00442 | TIGR00442 | coord: 67..515 e-value: 4.8E-96 score: 320.1 |
IPR015807 | Histidine-tRNA ligase | HAMAP | MF_00127 | His_tRNA_synth | coord: 64..525 score: 23.286 |
IPR006195 | Aminoacyl-tRNA synthetase, class II | PROSITE | PS50862 | AA_TRNA_LIGASE_II | coord: 71..418 score: 10.667 |
IPR033656 | Histidyl-anticodon-binding | CDD | cd00859 | HisRS_anticodon | coord: 434..524 e-value: 4.01846E-23 score: 92.988 |
IPR009068 | S15/NS1, RNA-binding | SUPERFAMILY | 47060 | S15/NS1 RNA-binding domain | coord: 13..69 |
Blast
BLAST of TCONS_00000994-protein vs. Swiss-Prot (Human)
Match: SYHC (Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1 SV=2) HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0 Identity = 333/525 (63.43%), Postives = 415/525 (79.05%), Query Frame = 0 Query: 9 KRVALQEKIKEQGEVVRKLKSSKDQTDEIKQQIKDEVAKLLELKAQLGGNNTKKKFVLKTPKGTRDYGPKQMAIREKVFKIITETFQKHGAVEINTPVMELKETLTGKYGEDSKLIYDLKDQGGEILALRYDLTVPFARYVAMNKVEKIKRYHIARVYRRDNPAMTRGRYREFYQCDYDVAGQYDPLIPDAECVKIVAEILLKLELGDFVIKVNHRKVLDGIFAISGVPECQFRTICSSVDKLDKTPWEEVRNEMVKEKGLSEDIADKIYEYVQYKGGPELIEKLLNDEKFTNNKSAKEGVEDMKLLFKYCELFGCLQNVSFDLSLARGLDYYTGVIYEAVLTGLPKELMNGKTDKKKDKKKEGEDEQVGVGSVAGGGRYDDLVGMFDSKGKKVPCVGVSLGIERIFSIMEKKQELSEEKARITKTKVLVVSGQKKMLEERLKLVNELWSQNIEAEVTFKANPKLLNQFQYCEDNAIPLCAVIGDSELEKGVVMLRNMKTREQNEVKRDELAEEIRK-----LCV 528
+R AL+E +K QGE VR LK K + I++EVAKLL+LKAQLG + +K+KFVLKTPKGTRDY P+QMA+REKVF +I F++HGA I+TPV ELKETL GKYGEDSKLIYDLKDQGGE+L+LRYDLTVPFARY+AMNK+ IKRYHIA+VYRRDNPAMTRGRYREFYQCD+D+AG +DP+IPDAEC+KI+ EIL L++GDF++KVN R++LDG+FAI GV + +FRTICSSVDKLDK WEEV+NEMV EKGL+ ++AD+I +YVQ GG L+E+LL D K + NK A EG+ D+KLLF+Y LFG +SFDLSLARGLDYYTGVIYEAVL P + +E +GVGSVA GGRYD LVGMFD KG+KVPCVG+S+G+ERIFSI+E++ E EEK R T+T+VLV S QKK+LEERLKLV+ELW I+AE+ +K NPKLLNQ QYCE+ IPL A+IG+ EL+ GV+ LR++ +RE+ +V+R++L EEI++ LC+
Sbjct: 3 ERAALEELVKLQGERVRGLKQQKASA----ELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTP---------------AQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTGQPLCI 508
The following BLAST results are available for this feature:
BLAST of TCONS_00000994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match Name | E-value | Identity | Description | |
SYHC | 0.000e+0 | 63.43 | Histidine--tRNA ligase, cytoplasmic OS=Homo sapien... | [more] |
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