TCONS_00000568-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000568-protein
Unique NameTCONS_00000568-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000568-protein ID=TCONS_00000568-protein|Name=TCONS_00000568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MASICRRIKSSKHISFSALRYLCSSNIQRLPWTGNESLKQDDPEMFTLIE
KERSRQVNGLELIASENFCSRAALEAMGSCLNNKYSEGYPGARYYGGNEV
IDEIELLLEKRSLEAFNLDPKEWGVNGQVFSGAAANFSIYTGVLNPHDRI
MGLDLPHGGHLSHGFMTDAKRVSATSKYFESMPYRLDESTGLIDYDQMEE
LACIFRPKILIAGTSAYSRLIDYKRFKDVAKKCNAYLLADMAHISGLVAA
GVVPSPFEHADIVSTTTHKSLRGVRHSLIFFRKGVRSVNKKGVETLYTLE
KDINEAVFPGLQGGPHNHSMAGVAVALKQAMSEEFKDYQLQTISNSQTMA
EEMVKRGYNIVSGGTDTHLVLVDLRPKGIDGARTEYVLDLVHITANKNTV
PGDKSAMKPSGLRLGEEIFQFRKQLLTHHHQIRSILTVKKSKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000337XLOC_000337Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000568TCONS_00000568Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015421PyrdxlP-dep_Trfase_major_sub1
IPR015422PyrdxlP-dep_Trfase_sub2
IPR001085Ser_HO-MeTrfase
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004372glycine hydroxymethyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006545glycine biosynthetic process
GO:0035999tetrahydrofolate interconversion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006545 glycine biosynthetic process
biological_process GO:0035999 tetrahydrofolate interconversion
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1GENE3D3.40.640.10coord: 67..327
e-value: 1.4E-42
score: 145.2
IPR015422Pyridoxal phosphate-dependent transferase, subdomain 2GENE3D3.90.1150.10coord: 328..429
e-value: 5.3E-45
score: 152.5
NoneNo IPR availablePFAMPF00464SHMTcoord: 38..421
e-value: 6.1E-186
score: 617.7
IPR001085Serine hydroxymethyltransferasePIRSFPIRSF000412SHMTcoord: 23..437
e-value: 1.7E-150
score: 498.6
IPR001085Serine hydroxymethyltransferaseHAMAPMF_00051SHMTcoord: 37..443
score: 37.779
IPR001085Serine hydroxymethyltransferaseCDDcd00378SHMTcoord: 39..415
e-value: 0.0
score: 561.053
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILY53383PLP-dependent transferasescoord: 26..418

Blast
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BLAST of TCONS_00000568-protein vs. Swiss-Prot (Human)
Match: GLYM (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0
Identity = 264/396 (66.67%), Postives = 326/396 (82.32%), Query Frame = 0 
Query:   32 WTGNESLKQDDPEMFTLIEKERSRQVNGLELIASENFCSRAALEAMGSCLNNKYSEGYPGARYYGGNEVIDEIELLLEKRSLEAFNLDPKEWGVNGQVFSGAAANFSIYTGVLNPHDRIMGLDLPHGGHLSHGFMTDAKRVSATSKYFESMPYRLDESTGLIDYDQMEELACIFRPKILIAGTSAYSRLIDYKRFKDVAKKCNAYLLADMAHISGLVAAGVVPSPFEHADIVSTTTHKSLRGVRHSLIFFRKGVRSVNKK-GVETLYTLEKDINEAVFPGLQGGPHNHSMAGVAVALKQAMSEEFKDYQLQTISNSQTMAEEMVKRGYNIVSGGTDTHLVLVDLRPKGIDGARTEYVLDLVHITANKNTVPGDKSAMKPSGLRLGEEIF---QFRK 423
            WTG ESL   DPEM+ L+++E+ RQ  GLELIASENFCSRAALEA+GSCLNNKYSEGYPG RYYGG EV+DEIELL ++R+LEAF+LDP +WGVN Q +SG+ AN ++YT +L PHDRIMGLDLP GGHL+HG+M+D KR+SATS +FESMPY+L+  TGLIDY+Q+   A +FRP+++IAGTSAY+RLIDY R ++V  +  A+LLADMAHISGLVAA V+PSPF+HADIV+TTTHK+LRG R  LIF+RKGV++V+ K G E  YT E  IN AVFP LQGGPHNH++A VAVALKQA +  F++Y LQ + N++ MA+ +++RGY++VSGGTD HLVLVDLRPKG+DGAR E VL+LV ITANKNT PGD+SA+ P GLRLG       QFR+
Sbjct:   43 WTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 438
The following BLAST results are available for this feature:
BLAST of TCONS_00000568-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLYM0.000e+066.67Serine hydroxymethyltransferase, mitochondrial OS=... [more]
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