|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000568 ID=TCONS_00000568|Name=TCONS_00000568|organism=Clytia hemisphaerica|type=transcript|length=1458bpRun BLAST on NCBI protein sequence of TCONS_00000568-protein >TCONS_00000568-protein ID=TCONS_00000568-protein|Name=TCONS_00000568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp MASICRRIKSSKHISFSALRYLCSSNIQRLPWTGNESLKQDDPEMFTLIERun BLAST on NCBI transcript from alignment at sc0000002:914724..922641- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000568 ID=TCONS_00000568|Name=TCONS_00000568|organism=Clytia hemisphaerica|type=transcript|length=7918bp|location=Sequence derived from alignment at sc0000002:914724..922641- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:914724..922641- >TCONS_00000568 ID=TCONS_00000568|Name=TCONS_00000568|organism=Clytia hemisphaerica|type=CDS|length=18648bp|location=Sequence derived from alignment at sc0000002:914724..922641- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000568 vs. Swiss-Prot (Human)
Match: GLYM (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3) HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0 Identity = 264/396 (66.67%), Postives = 326/396 (82.32%), Query Frame = 3
Query: 150 WTGNESLKQDDPEMFTLIEKERSRQVNGLELIASENFCSRAALEAMGSCLNNKYSEGYPGARYYGGNEVIDEIELLLEKRSLEAFNLDPKEWGVNGQVFSGAAANFSIYTGVLNPHDRIMGLDLPHGGHLSHGFMTDAKRVSATSKYFESMPYRLDESTGLIDYDQMEELACIFRPKILIAGTSAYSRLIDYKRFKDVAKKCNAYLLADMAHISGLVAAGVVPSPFEHADIVSTTTHKSLRGVRHSLIFFRKGVRSVN-KKGVETLYTLEKDINEAVFPGLQGGPHNHSMAGVAVALKQAMSEEFKDYQLQTISNSQTMAEEMVKRGYNIVSGGTDTHLVLVDLRPKGIDGARTEYVLDLVHITANKNTVPGDKSAMKPSGLRLGEEIF---QFRK 1325
WTG ESL DPEM+ L+++E+ RQ GLELIASENFCSRAALEA+GSCLNNKYSEGYPG RYYGG EV+DEIELL ++R+LEAF+LDP +WGVN Q +SG+ AN ++YT +L PHDRIMGLDLP GGHL+HG+M+D KR+SATS +FESMPY+L+ TGLIDY+Q+ A +FRP+++IAGTSAY+RLIDY R ++V + A+LLADMAHISGLVAA V+PSPF+HADIV+TTTHK+LRG R LIF+RKGV++V+ K G E YT E IN AVFP LQGGPHNH++A VAVALKQA + F++Y LQ + N++ MA+ +++RGY++VSGGTD HLVLVDLRPKG+DGAR E VL+LV ITANKNT PGD+SA+ P GLRLG QFR+
Sbjct: 43 WTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 438 The following BLAST results are available for this feature:
BLAST of TCONS_00000568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.