Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000370-protein ID=TCONS_00000370-protein|Name=TCONS_00000370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSAQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSK
LKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHSQSSEKSSSQSST
KSTGGGGEERRKGMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPA
DNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEE
EGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCF
YKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCKNKR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010750 | SGF29_tudor-like_dom |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 62..82 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 225..297
e-value: 1.1E-27
score: 95.3 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 152..224
e-value: 3.2E-6
score: 26.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 80..111 |
| IPR010750 | SGF29 tudor-like domain | PFAM | PF07039 | DUF1325 | coord: 159..293
e-value: 2.6E-36
score: 124.5 |
| IPR010750 | SGF29 tudor-like domain | PROSITE | PS51518 | SGF29_C | coord: 152..297
score: 52.321 |
Blast
BLAST of TCONS_00000370-protein vs. Swiss-Prot (Human)
Match: SGF29 (SAGA-associated factor 29 OS=Homo sapiens GN=SGF29 PE=1 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 3.368e-111 Identity = 160/294 (54.42%), Postives = 214/294 (72.79%), Query Frame = 0 Query: 3 AQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSKLKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHSQSSEKSSSQSSTKSTG--GGGEERRKGMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPADNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEEEGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCFYKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCK 294
A+ L ELHQ++ QE+R+RS NL NI KTHE+M+ E +++ Y+++KL+ LY TA +DA+ E ++++A++KI EIK ++ + + K G E RK MRRGVLM++LQQ+A+ LP+W + PPPLCG +PA Y+ +PGD VAARVK + +EQ+ILAEVVSY++AT KY+V+DID EEGK ERHTLSRRR+ PLP KA+P+ +PEALFQ +Q VLALYPQTTCFY+A+IH+ P+ + DY+VLFEDTSYADGYSPPL+V QRYVV CK
Sbjct: 11 AELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEER----------RIAAKIAGLYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDID---EEGK---ERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACK 288
The following BLAST results are available for this feature:
BLAST of TCONS_00000370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| SGF29 | 3.368e-111 | 54.42 | SAGA-associated factor 29 OS=Homo sapiens GN=SGF29... | [more] |
back to top
|
