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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000370 ID=TCONS_00000370|Name=TCONS_00000370|organism=Clytia hemisphaerica|type=transcript|length=1297bp
TACCTTCAAAGCCTCATCAACTGCTCTGTATATCATTAATTTTATCATAA
TgtttaattcccatttatttcTAGGAATCAATTTAAAATAAAGATAACTA
aaagagaaacaaaaaaaaacttaaaaaaatgtcAGCTCAGGCTCTCAAAG
AACTTCATCAGATGGTGTTACATATACAAGAGGATCGAACCAGGAGTGCT
GACAATTTATccaatataaacaaaacacaTGAAAAAATGCGACATGAAAC
ACGAGTCACTGCTTATTTCAAAAGCAAATTGAAAAGTTTATATAAAACAG
CTATCTCAGATGCTAAAACAGAATCAGAGTTAATACAACAAGCCATGGAG
AAAATAAACGAGATTAAACGttcacaaaatcaaaaacacaGTCAATCTTC
AGAAAAAAGTTCATCGCAATCGTCAACTAAAAGTACTGGTGGTGGTGGTG
AGGAACGTAGAAAAGGTATGCGACGTGGAGTCCTGATGTCTATGTTACAA
CAGAATGCGGTCAACCTCCCTGTATGGGATAGCATAATGGATGAAACCCC
TCCACCTTTATGTGGATGTTTACCAGCAGATAATACCTACATATGTCAAC
CAGGTGACCACGTGGCTGCACGTGTTAAGTACCCAGAGGAAGAGGAACAA
TACATATTAGCTGAAGTTGTGTCTTATAATAATGCTACGGGTAAATATGA
TGTGGAGGATATTGATTATTCTGAAGAAGAGGGTAAAAATGAGAAAGAAC
GACATACGTTGAGTCGTAGACGTATTTTCCCTCTACCGCTACACAAAGCT
GACCCTCAAGTCAATCCTGAAGCATTATTCCAAGCCAAACAAACTGTTCT
GGCGCTTTATCCACAAACAACGTGTTTCTATAAAGCAATGATACATAGCA
TACCGAAAACTAAGGAGATGGATTACACTGTTTTGTTTGAAGATACATCT
TATGCTGATGGTTATTCACCGCCGTTGAGTGTTCCCCAACGTTACGTTGT
ACCGTGTAAAAATAAACGTTGAACGGTAATGGCATTCATAGAAATACAAC
TGCAGTAGCGTAGGCAAGAGGGGCGCAagatttgtgtaggagagcagatt
tttatgacacggtaattatctttttatattatgaatagataattactgtg
tcataaaagtCTGCTCACCTAAACAAATTtcgcgcccctcctgtctacgc
tactgctgCTGTCATTAAGAAAAGTTGAGGaggatactttaatgggataa
attttcgcggggattaattttcgcggatttcgcggatttgggtgtca Run BLAST on NCBI protein sequence of TCONS_00000370-protein >TCONS_00000370-protein ID=TCONS_00000370-protein|Name=TCONS_00000370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSAQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSK
LKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHSQSSEKSSSQSST
KSTGGGGEERRKGMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPA
DNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEE
EGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCF
YKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCKNKR Run BLAST on NCBI transcript from alignment at sc0000001:2180996..2182292 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000370 ID=TCONS_00000370|Name=TCONS_00000370|organism=Clytia hemisphaerica|type=transcript|length=1297bp|location=Sequence derived from alignment at sc0000001:2180996..2182292 (Clytia hemisphaerica)
tgacacccaaatccgcgaaatccgcgaaaattaatccccgcgaaaattta
tcccattaaagtatcctCCTCAACTTTTCTTAATGACAGcagcagtagcg
tagacaggaggggcgcgaAATTTGTTTAGGTGAGCAGacttttatgacac
agtaattatctattcataatataaaaagataattaccgtgtcataaaaat
ctgctctcctacacaaatctTGCGCCCCTCTTGCCTACGCTACTGCAGTT
GTATTTCTATGAATGCCATTACCGTTCAACGTTTATTTTTACACGGTACA
ACGTAACGTTGGGGAACACTCAACGGCGGTGAATAACCATCAGCATAAGA
TGTATCTTCAAACAAAACAGTGTAATCCATCTCCTTAGTTTTCGGTATGC
TATGTATCATTGCTTTATAGAAACACGTTGTTTGTGGATAAAGCGCCAGA
ACAGTTTGTTTGGCTTGGAATAATGCTTCAGGATTGACTTGAGGGTCAGC
TTTGTGTAGCGGTAGAGGGAAAATACGTCTACGACTCAACGTATGTCGTT
CTTTCTCATTTTTACCCTCTTCTTCAGAATAATCAATATCCTCCACATCA
TATTTACCCGTAGCATTATTATAAGACACAACTTCAGCTAATATGTATTG
TTCCTCTTCCTCTGGGTACTTAACACGTGCAGCCACGTGGTCACCTGGTT
GACATATGTAGGTATTATCTGCTGGTAAACATCCACATAAAGGTGGAGGG
GTTTCATCCATTATGCTATCCCATACAGGGAGGTTGACCGCATTCTGTTG
TAACATAGACATCAGGACTCCACGTCGCATACCTTTTCTACGTTCCTCAC
CACCACCACCAGTACTTTTAGTTGACGATTGCGATGAACTTTTTTCTGAA
GATTGACtgtgtttttgattttgtgaaCGTTTAATCTCGTTTATTTTCTC
CATGGCTTGTTGTATTAACTCTGATTCTGTTTTAGCATCTGAGATAGCTG
TTTTATATAAACTTTTCAATTTGCTTTTGAAATAAGCAGTGACTCGTGTT
TCATGTCGCATTTTTTCAtgtgttttgtttatattggATAAATTGTCAGC
ACTCCTGGTTCGATCCTCTTGTATATGTAACACCATCTGATGAAGTTCTT
TGAGAGCCTGAGCTgacatttttttaagtttttttttgtttctctttTAG
TTATCTTTATTTTAAATTGATTCCTAgaaataaatgggaattaaacATTA
TGATAAAATTAATGATATACAGAGCAGTTGATGAGGCTTTGAAGGTA Coding sequence (CDS) from alignment at sc0000001:2180996..2182292 >TCONS_00000370 ID=TCONS_00000370|Name=TCONS_00000370|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0000001:2180996..2182292 (Clytia hemisphaerica)
TCAACGTTTATTTTTACACGGTACAACGTAACGTTGGGGAACACTCAACG
GCGGTGAATAACCATCAGCATAAGATGTATCTTCAAACAAAACAGTGTAA
TCCATCTCCTTAGTTTTCGGTATGCTATGTATCATTGCTTTATAGAAACA
CGTTGTTTGTGGATAAAGCGCCAGAACAGTTTGTTTGGCTTGGAATAATG
CTTCAGGATTGACTTGAGGGTCAGCTTTGTGTAGCGGTAGAGGGAAAATA
CGTCTACGACTCAACGTATGTCGTTCTTTCTCATTTTTACCCTCTTCTTC
AGAATAATCAATATCCTCCACATCATATTTACCCGTAGCATTATTATAAG
ACACAACTTCAGCTAATATGTATTGTTCCTCTTCCTCTGGGTACTTAACA
CGTGCAGCCACGTGGTCACCTGGTTGACATATGTAGGTATTATCTGCTGG
TAAACATCCACATAAAGGTGGAGGGGTTTCATCCATTATGCTATCCCATA
CAGGGAGGTTGACCGCATTCTGTTGTAACATAGACATCAGGACTCCACGT
CGCATACCTTTTCTACGTTCCTCACCACCACCACCAGTACTTTTAGTTGA
CGATTGCGATGAACTTTTTTCTGAAGATTGACtgtgtttttgattttgtg
aaCGTTTAATCTCGTTTATTTTCTCCATGGCTTGTTGTATTAACTCTGAT
TCTGTTTTAGCATCTGAGATAGCTGTTTTATATAAACTTTTCAATTTGCT
TTTGAAATAAGCAGTGACTCGTGTTTCATGTCGCATTTTTTCAtgtgttt
tgtttatattggATAAATTGTCAGCACTCCTGGTTCGATCCTCTTGTATA
TGTAACACCATCTGATGAAGTTCTTTGAGAGCCTGAGCTgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000370-exon-sc0000001-1491911889:2180996..2182292 | TCONS_00000370-exon-sc0000001-1491911889:2180996..2182292 | Clytia hemisphaerica | exon |
| TCONS_00000370-exon-sc0000001-1510915933:2180996..2182292 | TCONS_00000370-exon-sc0000001-1510915933:2180996..2182292 | Clytia hemisphaerica | exon |
| TCONS_00000370-exon-sc0000001-1575043694:2180996..2182292 | TCONS_00000370-exon-sc0000001-1575043694:2180996..2182292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2180996..2182292 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010750 | SGF29_tudor-like_dom |
Blast
BLAST of TCONS_00000370 vs. Swiss-Prot (Human)
Match: SGF29 (SAGA-associated factor 29 OS=Homo sapiens GN=SGF29 PE=1 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 3.961e-104 Identity = 156/292 (53.42%), Postives = 209/292 (71.58%), Query Frame = 3
Query: 135 AQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSKLKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHXXXXXXXXXXXXXXXXXXXXXXXXXXMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPADNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEEEGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCFYKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCK 1010
A+ L ELHQ++ QE+R+RS NL NI KTHE+M+ E +++ Y+++KL+ LY TA +DA+ E ++++A++KI EIK ++ + S MRRGVLM++LQQ+A+ LP+W + PPPLCG +PA Y+ +PGD VAARVK + +EQ+ILAEVVSY++AT KY+V+DID EEGK ERHTLSRRR+ PLP KA+P+ +PEALFQ +Q VLALYPQTTCFY+A+IH+ P+ + DY+VLFEDTSYADGYSPPL+V QRYVV CK
Sbjct: 11 AELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKT--------MRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDID---EEGK---ERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACK 288
The following BLAST results are available for this feature:
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