TCONS_00000370-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000370-protein
Unique NameTCONS_00000370-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000370-protein ID=TCONS_00000370-protein|Name=TCONS_00000370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MSAQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSK
LKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHSQSSEKSSSQSST
KSTGGGGEERRKGMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPA
DNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEE
EGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCF
YKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCKNKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000244XLOC_000244Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000370TCONS_00000370Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010750SGF29_tudor-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableGENE3D2.30.30.140coord: 225..297
e-value: 1.1E-27
score: 95.3
NoneNo IPR availableGENE3D2.30.30.140coord: 152..224
e-value: 3.2E-6
score: 26.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..111
IPR010750SGF29 tudor-like domainPFAMPF07039DUF1325coord: 159..293
e-value: 2.6E-36
score: 124.5
IPR010750SGF29 tudor-like domainPROSITEPS51518SGF29_Ccoord: 152..297
score: 52.321

Blast
[Close]
BLAST of TCONS_00000370-protein vs. Swiss-Prot (Human)
Match: SGF29 (SAGA-associated factor 29 OS=Homo sapiens GN=SGF29 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 3.368e-111
Identity = 160/294 (54.42%), Postives = 214/294 (72.79%), Query Frame = 0 
Query:    3 AQALKELHQMVLHIQEDRTRSADNLSNINKTHEKMRHETRVTAYFKSKLKSLYKTAISDAKTESELIQQAMEKINEIKRSQNQKHSQSSEKSSSQSSTKSTG--GGGEERRKGMRRGVLMSMLQQNAVNLPVWDSIMDETPPPLCGCLPADNTYICQPGDHVAARVKYPEEEEQYILAEVVSYNNATGKYDVEDIDYSEEEGKNEKERHTLSRRRIFPLPLHKADPQVNPEALFQAKQTVLALYPQTTCFYKAMIHSIPKTKEMDYTVLFEDTSYADGYSPPLSVPQRYVVPCK 294
            A+ L ELHQ++   QE+R+RS  NL NI KTHE+M+ E +++ Y+++KL+ LY TA +DA+ E  ++++A++KI EIK    ++          + + K  G     E  RK MRRGVLM++LQQ+A+ LP+W     + PPPLCG +PA   Y+ +PGD VAARVK  + +EQ+ILAEVVSY++AT KY+V+DID   EEGK   ERHTLSRRR+ PLP  KA+P+ +PEALFQ +Q VLALYPQTTCFY+A+IH+ P+  + DY+VLFEDTSYADGYSPPL+V QRYVV CK
Sbjct:   11 AELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLRGLYTTAKADAEAECNILRKALDKIAEIKSLLEER----------RIAAKIAGLYNDSEPPRKTMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDID---EEGK---ERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACK 288
The following BLAST results are available for this feature:
BLAST of TCONS_00000370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SGF293.368e-11154.42SAGA-associated factor 29 OS=Homo sapiens GN=SGF29... [more]
back to top