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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002285 ID=TCONS_00002285|Name=TCONS_00002285|organism=Clytia hemisphaerica|type=transcript|length=1383bp
AAAATATATATTGGCGTTTTTACCACATATCTAGCTTTGCTTGCTGCGTC
AGTCTTTGATACTGATTTCTTTTCCCTTTTCTGGCCTTTTGGCTTTTTTT
AAACTTCCCACTTGCAGTAACAGCCAGCCCAACTCTTCATGTAATGCGGC
TGGTTAGCTCTTCGGGCTGCTACTTCTAGTACGTCGCTCTAACTAATGCC
TTCCGGCTCTGTAgagccaaaatcaaaatcaaaacaaagattttccTTGG
AGTCCGAAGAACTGCCCACCCGTAGTGGTGAATCTTACCAATAGCCGGAA
CCTGTTAAAATCCCTTACAAGATCTCTGACCAGTGACAAAAGGTTGGCTG
ACCCTGGCATAACAACTCCACTACAAATCCTACCAAATCTTTGGAATCAT
GAagctttttatttgcaaaatcaCAGgtaaagaaatctTCACAGATGCAA
GCAAATATGAATTAGTTGATGATGCCTACTACATTGTGAAAGGCAAAATT
GAAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGAGGAAACAAATC
TGCTGAGGGTGGAGATGAGGAAGCTGCTGAAGTCCATGTTGCAATTGTTT
CAAGCCTTGTCAACTCATGCAAACTAGAAGAGAATGTCCCAATTGCTTCc
aagaaagatttcaaaggcaAATTTTCTGCCTATTGTAAAAAGATTACTGG
CTTTGTAAAAGAGGAATCTCCAGACCGCCTTGATCACGTTAAATCGGCAA
TGCAAAAGAAGGCTATGGAAATAATCGGTGACTTCGGTACTTATCAATGG
TATGCTGCTGAAGACGACGGTTTTGATTGCGACGGAGCACCTATCCCACA
TAAAACTATCAATTCTGATAGTAAGAAAGGTGATCAAGTAGGCGATGTTT
GCGAAATTATTGTGTGGAAGGATGGTGTCCGTGAAGAAAAATGTtAAATC
ATTAATCAATCAATGGGGAGAGGCTGGGTCAATGTTAACCAACCATCGGA
CGGGTCGATCGAATTTCATCTAAAAAAGATGATGTACTCAAAAGTCTTTA
TTGATTGAGAGGAAACTACTATTTAGGAATTGCCATATTGTACATTACTT
GAATTGAATACATTCAACGAACTAATAAAATAATCTTTTCTACAATTAAT
TCCGTTGTCAGTTTTAATTATTacaactagtcatagctttcactatcCTA
AATGCCCCCACTGAAAGGTCATGCCATGcacttttaaagcttttaatgct
ttaaagattgaagcataaaaacaatcaggaataattaattggtttttgtt
aattattgattggttgattgattgattgaggcaattgcttgaaaaaataa
tcatattccattaacaaaatacttgaagaattc Run BLAST on NCBI transcript from alignment at sc0000019:1034024..1042630+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002285 ID=TCONS_00002285|Name=TCONS_00002285|organism=Clytia hemisphaerica|type=transcript|length=8607bp|location=Sequence derived from alignment at sc0000019:1034024..1042630+ (Clytia hemisphaerica)
AAAATATATATTGGCGTTTTTACCACATATCTAGCTTTGCTTGCTGCGTC
AGTCTTTGATACTGATTTCTTTTCCCTTTTCTGGCCTTTTGGCTTTTTTT
AAACTTCCCACTTGCAGTAACAGCCAGCCCAACTCTTCATGTAATGCGGC
TGGTTAGCTCTTCGGGCTGCTACTTCTAGTACGTCGCTCTAACTAATGCC
TTCCGGCTCTGTAgagccaaaatcaaaatcaaaacaaagattttccTTGG
AGTCCGAAGAACTGCCCACCCGTAGTGGTGAATCTTACCAATAGCCGGAA
CCTGTTAAAATCCCTTACAAGATCTCTGACCAGTGACAAAAGGTTGGCTG
ACCCTGGCATAACAACTCCACTACAAATCCTACCAAATCTTTGGAATCAT
GAagctttttatttgcaaaatcaCAGGTATGTATTTTCAACCTTTCTTCA
TTCTCAtgggtcaaaaatttttccatttcaaccaaaattttGGCTGCTTT
ATTACAATCTAAAAGTGGGCTGTGATGGTTTGATATAATTTGGCATATTC
TTTCCATGTTCCTGAGCAAAATTCCCAGATTCTTCCTTTCGTTTAAAGTC
AAGATATGACTAATCTGATAAGAAAAGTTGAATAAAAAACATCGTTATAT
CTAGATGTTTCGGTGTTTCTATCACCATCACGATGATAGTCCTGTGTTGT
TGATGTCGAAAATTGATTCATTCAACCAGACATCcccgctcgataggatc
gattaTCGGAacagctcgatgacggatcgatatgtgatcgatggattact
taacaatccggataggagatcgatagggcggtcatcgaaaaaatgctctg
ttcgcatCGCAatgggtgttaaaaatgcatgcgggcggacgggcggttAA
AAACATTcccaggttttttttaatcacgccactAACTCAGGGacgggtgg
taacgcgagcaaaacaatttttcaatagtCGTCAGaggaattgagaaaaa
agctatactttaaaagaacaaattgcttttcccagatttttttccgcatc
tccgcacaggaaaatcagcggaaaatttcatgcgggcgggtgacacgaat
agaacaatttttcgatgaccgcctagatagcgactccagaagtcatgcaa
ctttcgttgacgtcaaaccaaatgtttcatttttccgtgaactttgaacc
cttggaacttttcttctatgtatgctaaagcgttccggtttttactaaat
gaaagcccgtgatcttagctttccagcggtatataacactgtggacacag
gCTAGACGGccaattggtaaaatgccgaacgttttgcaacattttgaaaa
ttgtttgccgacgggagaaaatttttttgcaactATCGAaaaacaaatgt
gtctggaaacggaggaaaatgtatttggaggctgaaactttgtatgttta
tcagaaaaagggtgaggaattcaaaaatcacaatcgctaattctagttct
ttcattttcatgtatagtgacacttacttacaaaattaatgacaaaatca
taaaatatgatgcctaacaagacaaaagcacgaaaaatatttattatata
tacaaaatgtgatgtggatggtgtgaatggataaaaaatggcaccataca
gaagcttgcaaggtccctaagagagtggttttagaaagttggaactaatt
aattattcaattattattttaatgtcttactgctgcttaatgacaatttt
tgacaaaaatattaacagaatcataaaatctgatgcaagaaaagacgaaa
acacgaaaaatatttattatacaaaatgtgatgtggatggtgtgaatgga
tttAAAatggcaccaatcagaagcttgcaaggtccctaagagagtggttt
tagaaggatgaaactaattaatcattcaattgttattttaatgacttaat
gacaatttttgacaaaaatattgacagaattacaaaatttcatgtcttac
aagagaaaaacaccaaaaatatttagcatgccgaatgtgatgataacatg
ATGTAAGTTACATGTGAGTTTACCGTCGTCAACTTACCCgaaaatagatg
cggcatgatttcatttaaattcattattcattattttcccaacagcacct
tatccaccatttctgctaaccattctctctcaaaataaaaaattttgctt
cgcttCAACCCTACGCATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGTcacattttctgtaaaaaatcttctttgtttacccgtgTTTA
CTCTGGGAAAAAGGTCATGCGTAGAGGGAATCCTGcgtagagacgatttt
aacaacaatggaggttgtagttgtaaagaaatatagaaataatgaaattt
tgagcaGTTCAtcgaaataatgaaattttcatgcgggtgctttttagaga
tgcgggcggccgacggtaaactcacATGTGACTTTCATCGGccatatggc
tggatataaaattacaccaatcagaagctcatGAGTTCCCTGAGAaagta
gttttagagcgatgtgttttattatatgtaaccatcatataacattacaa
acattacaatatgtaatatacctgttatacgtataatatggttttaaata
ttttctggtctgcgttatacacggcgcaaactgcgaaagatcgataaaag
cacatggttaaattttgatgttcgaaatggttttatatggatgaaattgc
ttgagaattatgtttttgataattctttgtgttttccaaacattttcctc
tgcaatgacattgattagagtcNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttttagtcaaattttt
gacactaaaatttgaatatctttacaaccacttatcctctggaggcctat
gacccctcattttctttctttttcaaagctctacaatataggatagattt
tgaaaaaaaaattaaaacttgaaaaatcttctggagttgctagcctagag
gatcgatactcaagattttttgaagcttatgattagttattgATTATTTA
TCAATCTTATCAACCCTATCGACTCCTACTCGATTTGCgaaatcgattaa
cgattgatgacgaatcggtatactcaattgaaatactagctcgataatgt
atcaacgaaggatcgatactcaacactttttaatggctgaatcttccatc
gatctcctatccggatcgttaagttaatccatcgatcacatatccaTCCA
TCATCGAGCCGTttcgatgatcgatcctatcgagcgcggacgtctggttg
aagatagacaggcagctgatgacatcaaaaaagtgaataagtGAAAATTC
GAGGGACAAATATTGAGTATTTATTATGAAATCTTTATAGTTTAGAgagt
cagaaaaatttactCGGCTTGTTTAAAAATCATTACTGGACGTGTCCgag
aataatttattaattgatgACAAGCAAAAGTGAGAAATTgatgttgcaaa
atttcaaagtttcatATACCATTCGAAGCGTATtttgatgtagatttcaa
attacatcaatcttaataagtaaaaatttgaataagaaaagctcttctat
gacgtcatttttgaaaaaatgcttcattttATAAGGTgaaaaaatgcttc
attttATAAGGAATTATGATCTCAATTTTCTCAAGTTAGGCTGAGAAATT
GAATATNCTCCCTTCCCTTGGAAAGAATTCAGAAGAAATCCCTCTGAACA
AAAGTACTTTTGAATGGTTCCACTGTGAACCCTTCATTCGATTCCTAATT
GATGCCTAATCATTTCTATttttaggtaaagaaatctTCACAGATGCAAG
CAAATATGAATTAGTTGATGATGCCTACTACATTGTGAAAGGCAAAATTG
AAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGAGGTACATTTTGT
TATTTAATTTTGAATGGGTGTCTGAACAGGGGCTCTTCCAGAACTTTTTT
GTACATGGGAGTGGAGGATAGTGTCCAgtgtacagtatatggcccccaaa
acggagacggcccccaaaacggaggttgtcattaaaatgaggattctgac
ttgtagatttattaGAATtgaacgatttttgtttatttagaaagaatgat
ggttatactaaaaAGTNTGGTGTAAATTGTTTTTCGATTTGATgacgttg
aaatttgacatttttaggggGTGAGAGGGTCATGATTGACCAAAATCACA
TGTAAAAtttaagtcataacttttgaaatctaaatttttacctattgaga
ttgattcttttaaatacccttcctaaaaggaaaattatttcataaaCGCC
CCTTTTAATGAACGCCCCCTCTAGGCAAGcggcgtttattagaaacttgt
gtctttaatacttcaataccagcgttgattgggtttgaaaaggaagattt
tagtcatttctcgtaaccagagcagttttcgattcaataattcaataaac
gcccccttcttttaaacgcccctcttAAAATCGAAAAACGTAATACAGTA
CTTTTTTTCTCGATTATTTCTCCCTTCCCTTGGAAAGAATTCAGAAGAAA
TCCCTCTGAACAAAAGTACTTTTGAATGGTTCCACTGTGAACCCTTCATT
CGATTCCTAATTGATGCCTAATCATTTCTATttttaggtaaagaaatctT
CACAGATGCAAGCAAATATGAATTAGTTGATGATGCCTACTACATTGTGA
AAGGCAAAATTGAAGCTTCATCTAATGAAATTGATGAATCAGCCATTGGA
GGTACATTTTGTTATTTAATTTTGAATGGGTGTCTGAACAGGGGCTCTTC
CAGAACTTTTTTGTACATGGGAGTGGAGGATAGTGTCCAgtgtacagtat
atggcccccaaaacggagacggcccccaaaacggaggttgtcattaaaat
gaggattctgacttgtagatttattaGAATtgaacgatttttgtttattt
agaaagaatgatggttatactaaaaagtgagcatgtttttgatggtttga
gacagattcaaaataacatatttgcgtatGAAGgagatattttaacacca
aaattagataaaaattgcatataactcactctagctcctttgatattgaa
aataagttatgaaaatggggtattggaaactttctacacctaatgacgtg
cagaaaatgcagatacatctgtgacttcagaggatgggtaaaagatatag
catcttaaaggtcaaccagtattttgggagcctagaatcagcattgataa
aaccgaaaattctaaatatgagaaacagcaaaatgtcttggaattccatt
cctatcaggttgagttaatagcttatagcaaaaaattaacatcatatata
aaaattttcgctgaatcagcaaaaatggcaaattctgtcatttttctgca
aaatataggagaaaaatatctttaaagcttaatattttcagtttcagtga
agcttttcttctcaaattttcacagctttttcCATTCATGAATgcaacta
ttttcaaaagacattgattttcaaaaacttgattaagacgttgttaaatc
taaattgtcattttgaaaatttctaaattttcagtttggactttgcaata
tcgaacatcttgaaatatttcataaaaatcttaaattttacatCTATCAG
GTTGTAAATTTAAGggtaaacacaaatatgttcatagtttttcctcctat
taccactgggcttaataatttgattttaactatacctccgttttgggggc
cccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccgtt
ttgggggccccaaacctgcattttgacaaccaggggtatactgtaaaaaa
tttatcaaacaaatttatgcccaaaaccctctaaatcacatttcaaaact
acggtcaaaattttgtattgatatcttaaagatatctcgagaaatcgcta
aaattgcaaacctctgttttgggggccattagaaaaaagctacctatctt
taagcgattgaataatattgttgaaattgaaaattttgaaaaagaactgt
cGGGAAATAAaatagagatgttaaagttttgcatgcaagaaaaattcttg
taaaacctcttttcccctagctttgagagaaattttaaatttgatcgccg
ttgtgggggccacatactgtagtgaaaaatatacaaaatttgccttgtcc
cgGGGTGATAAACTGGTTCTGTTTTTGGGTAATTTGGCTCTGTTTGAGAG
TAATTTtaaatgtccagggggtcaaaagtcatgtccgggggtaaatttcc
aaaaattgttatatcctctaCCCACATTCATGATCCATGtataaaacttc
aaatttgGTCAGTTCGTTCCAATATTAAGAGGTTTTTAGTTTCGCCGGAA
AggcttgtgatgacgtcatcataaaacTTTCAACCCTCATAACTTTTAAT
AGGAAGATTAAGATAAGGCATgctttatacctcaattttcatcagcattt
catgctttTTCCGCTgcaaccatcagattttgaatattttcaaaagaaat
tgtttgcccagccacctgatgacgtcatctggcaggtggccaggtgacAA
AATTTGGTATTACTGAaggttactgtttaaaattaagttttagacccttt
aaggatcatctgtgccaaatttcacgattttatcaccatctgaagtattc
ttacgtttttatgtgctatCAGACCTCGCTATACATTTTGTGTCACACAT
GGTacatttttaataagaaaatatCTCATTTATTTTTCCAGATTCGAAAT
AGTCTTGTTTCACCAATATGCCAATTATATTAGTGAGTATCTACCTCATC
AAACACAATCCTATCTCATTTTCCCTGTTAGGAAACAAATCTGCTGAGGG
TGGAGATGAGGAAGCTGCTGAAGTCCATGTTGCAATTGTTTCAAGCCTTG
TCAACTCATGCAAACTAGAAGAGAATGTCCCAATTGCTTCcaagaaagat
ttcaaaggcaAATTTTCTGCCTATTGTAAAAAGATTACTGGCTTTGTAAA
AGAGGAATCTCCAGACCGCCTTGATCACGTTAAATCGGCAATGCAAAAGA
AGGCTATGGAAATAATCGGTGACTTCGGTACTTATCAATGGTATGCTGCT
GAAGACGACGGTTTTGATTGCGACGGAGCACCTATCCCACATAAAACTAT
CAATTCTGATAGTAAGAAAGGTGATCAAGTAGGCGATGTTTGCGAAATTA
TTGTGTGGAAGGATGGTGTCCGTGAAGAAAAATGTGTAAGTTTGACATTT
CCTTTGAGTAAATTCTTCGAATACAGTCGAAATAATCTGCTTAATTTTCA
TGGCGGGTTTCATTAGGAtttattaccttaagggaagcaATTTTGGCGGA
attaattttagcatttttgggTGTCTGACCCGAACATTaattccgcaaaa
attagttccgttTAGGTAATCTCCTGCCGTTTGctcaaaatgtatttttg
aaCTCAAGATAAAACAACTTTCTCCCTCTCCTGCTTCCTGCGTGCACAAA
AAAATTTGAGTGTTCCTTTAttaattctgcaaaattttaaaaatgggCTG
GGCTAACTAGGGCTACGTTATTTTCAGAATTAATTTTCTTCGATGCAAGT
GATTTCTCTCACGCCTTTCGAACTTTAAACTCCATGATATCGACttattt
tgatttcctttttttcagtAAATCATTAATCAATCAATGGGGAGAGGCTG
GGTCAATGTTAACCAACCATCGGACGGGTCGATCGAATTTCATCTAAAAA
AGATGATGTACTCAAAAGTCTTTATTGATTGAGAGGAAACTACTATTTAG
GAATTGCCATATTGTACATTACTTGAATTGAATACATTCAACGAACTAAT
AAAATAATCTTTTCTACAATTAATTCCGTTGTCAGTTTTAATTATTacaa
ctagtcatagctttcactatcCTAAATGCCCCCACTGAAAGGTCATGCCA
TGcacttttaaagcttttaatgctttaaagattgaagcataaaaacaatc
aggaataattaattggtttttgttaattattgattggttgattgattgat
tgaggcaattgcttgaaaaaataatcatattccattaacaaaatacttga
agaattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002285-exon-sc0000019-1491911889:1034024..1034449 | TCONS_00002285-exon-sc0000019-1491911889:1034024..1034449 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1510915933:1034024..1034449 | TCONS_00002285-exon-sc0000019-1510915933:1034024..1034449 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1575043694:1034024..1034449 | TCONS_00002285-exon-sc0000019-1575043694:1034024..1034449 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1491911889:1039111..1039224 | TCONS_00002285-exon-sc0000019-1491911889:1039111..1039224 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1510915933:1039111..1039224 | TCONS_00002285-exon-sc0000019-1510915933:1039111..1039224 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1575043694:1039111..1039224 | TCONS_00002285-exon-sc0000019-1575043694:1039111..1039224 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1491911889:1041355..1041758 | TCONS_00002285-exon-sc0000019-1491911889:1041355..1041758 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1510915933:1041355..1041758 | TCONS_00002285-exon-sc0000019-1510915933:1041355..1041758 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1575043694:1041355..1041758 | TCONS_00002285-exon-sc0000019-1575043694:1041355..1041758 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1491911889:1042192..1042630 | TCONS_00002285-exon-sc0000019-1491911889:1042192..1042630 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1510915933:1042192..1042630 | TCONS_00002285-exon-sc0000019-1510915933:1042192..1042630 | Clytia hemisphaerica | exon |
| TCONS_00002285-exon-sc0000019-1575043694:1042192..1042630 | TCONS_00002285-exon-sc0000019-1575043694:1042192..1042630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:1034024..1042630 + |
Blast
The following BLAST results are available for this feature:
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