TCONS_00024210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024210
Unique NameTCONS_00024210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024210 ID=TCONS_00024210|Name=TCONS_00024210|organism=Clytia hemisphaerica|type=transcript|length=395bp
CATTCATTAATATTTGTTTCGCAATGTCTTCCTGTCCATCCTGGTTTACA
CCGACATTCATAATCATTGATCTTGTCAATACATGTTGCATTGTTCATGC
AGTTGTTGATTTTGCACTCGTCAATATTTCCATCACATAATTTTCCAGAC
CATCCTGGTTTGCATGTACAAGTGTATGAAGCAATACCATCGATACAAGT
TGCATTGTTCTTGCATTCATTTTTCAAGCAGTCATCAATGTTCACATCAC
AATATTTGTCAGTCCATCCCTTTTGACAGTTGCAGGTGTAGCTATTGATT
CCATCAATACATTTTCCATTGACACAGCTGTTGTTGACACATTCGTCGAT
ATTGTGTTCACAGAACTTTCCTGTCCAGCCTGGGAGACAATTACA
Run BLAST on NCBI

transcript from alignment at sc0000478:220695..221770-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024210 ID=TCONS_00024210|Name=TCONS_00024210|organism=Clytia hemisphaerica|type=transcript|length=1076bp|location=Sequence derived from alignment at sc0000478:220695..221770- (Clytia hemisphaerica)
CATTCATTAATATTTGTTTCGCAATGTCTTCCTGTCCATCCTGGTTTACA
CCGACATTCATAATCATTGATCTTGTCAATACATGTTGCATTGTTCATGC
AGTTGTTGATTTTGCACTCGTCAATATTTCCATCACATAATTTTCCAGAC
CATCCTGGTTTGCATGTACAAGTGTATGAAGCAATACCATCGATACAAGT
TGCATTGTTCTTGCATTCATTTTTCAAGCAGTCATCAATGTTCACATCAC
AATATTTGTCAGTCCATCCCTTTTGACAGTTGCAGGTGTAGCTATTGATT
CCATCAATACATTTTCCATTGACACAGCTGTTGTTGACACATTCGTCGAT
ATTATGCTCACAGAACTTTCCTGTCCAGCCTGAGAGACAATTACACTTAT
AGCCATTCACCAAATCTGTGCAAATTGCATTATTTTGGCATTGATGAGTT
TTACATTCATCAATGTTGACTTCACAGTATCGCCCGGTCCATCCAGATTT
GCATGAGCAGGTATAATTTGCAATACCGTCAATGCATTCTGCTTCATTTT
GACATTTATTTCCTTCACACTCATCGATATTTTTCTCGCAGAACTCCCCT
GTCCATCCTGGCTTGCAATGACATTTATAATCATTGATTAGATCTTCACA
AACTGCACCATTTCGACAAGAGTTGTTTCTGCATTCATCGATATTTATCT
CACAATACTGTCCTGTCCATCCTGGGTGGCATTGACAATCATATCCGTTG
ATTCTGTCAATGCATGTTGCATTATTCTGACATTTGTTATCCACACATTC
GTCAATGTTTTCCTCGCAAAATCTTCCAGACCATCCTGGTTTGCATGTAC
AATTGTATGAAGCAATTCCATCGACACAAGTTGCATTGTTCTTGCATTCA
TTTTTCACGCAGTCATCAATGTTCACATCACAATATTTGCCAGTCCATCC
CTTTTGACAGTTGCAGGTGTAGCTATTGATTCCATCAATACATTTCCCAT
TGACACAGCTGTTGTTGACACATTCGTCGATATTGTGTTCACAGAACTTT
CCTGTCCAGCCTGGGAGACAATTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013582XLOC_013582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024210-exon-sc0000478-1575043694:221431..221770TCONS_00024210-exon-sc0000478-1575043694:221431..221770Clytia hemisphaericaexon
TCONS_00024210-exon-sc0000478-1575043694:220695..220749TCONS_00024210-exon-sc0000478-1575043694:220695..220749Clytia hemisphaericaexon
TCONS_00024210-exon-sc0000478-1510915933:221431..221770TCONS_00024210-exon-sc0000478-1510915933:221431..221770Clytia hemisphaericaexon
TCONS_00024210-exon-sc0000478-1510915933:220695..220749TCONS_00024210-exon-sc0000478-1510915933:220695..220749Clytia hemisphaericaexon
TCONS_00024210-exon-sc0000478-1491911889:221431..221770TCONS_00024210-exon-sc0000478-1491911889:221431..221770Clytia hemisphaericaexon
TCONS_00024210-exon-sc0000478-1491911889:220695..220749TCONS_00024210-exon-sc0000478-1491911889:220695..220749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:220695..221770 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0358529	0	0	0	0	0	1.28879	0	1.70399	1.71595	0	0	0	0
Blast
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BLAST of TCONS_00024210 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.316e-36
Identity = 50/129 (38.76%), Postives = 82/129 (63.57%), Query Frame = -1 
Query:   12 CNCLPGWTGKFCEHNIDECVNNSC-VNGKCIDGINSYTCNCQKGWTDKYCDVNIDDCLKNECKNNATCIDGIASYTCTCKPGWSGKLCDGNIDECKINNCMNNATCIDKINDYECRCKPGWTGRHCETN 395
            C CLPG+ G +CE +IDEC+ + C   G C + +  ++C+C  G+T + C+ +I++CL++ CKN A C +   S+ C CK G++GK+C+ +++ C+ N C N  +C   ++ Y C C  G  G+HCE N
Sbjct: 3848 CKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELN 3976

HSP 2 Score: 95.5153 bits (236), Expect = 6.783e-23
Identity = 39/137 (28.47%), Postives = 71/137 (51.82%), Query Frame = -1 
Query:    6 DECVNNSCVNG-KCI----------------------DGINSYTCNCQKGWTDKYCDVNIDDCLKNECKNNATCIDGIASYTCTCKPGWSGKLCDGNIDECKINNCMNNATCIDKINDYECRCKPGWTGRHCETNIN 347
            D CV+  C NG  C+                      + +  + C C  G+   +C+++ID+CL + C +  TC + +  ++C+C  G++G+ C+ +I+EC  + C N A C +    + C CK G+TG+ CE+++N
Sbjct: 3804 DSCVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVN 3940
The following BLAST results are available for this feature:
BLAST of TCONS_00024210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT43.316e-3638.76Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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