TCONS_00023098 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023098
Unique Name	TCONS_00023098
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	673

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000441:190115..194362-
coding sequence from alignment at sc0000441:190115..194362-

transcript sequence

>TCONS_00023098 ID=TCONS_00023098|Name=TCONS_00023098|organism=Clytia hemisphaerica|type=transcript|length=673bp
tccagaaaaaaaaattattacaaaaataattttacaaaaaatataaagaa
tatCATACAATAATGTTAGATGATACAGAGGATATCGCATTGAATTTTGG
TGATGAAGGTGCTGGCAAAAACAAACGCTTCAAACATCCCGTAGCAGCAT
TCTTTCACATTGTTTTTCGTTTACTGGCTCTCGTCTTCTACTTTTTGGCA
AATTTATTCACCAACAGTTTTGTGACGATGTTCGTGATCTTAGTTTTGTT
ATTATCGTTCGACTTTTGGGTGGTGAAGAATGTGACAGGACGGCTATTGG
TTGGTTTGCGATGGTGGAATTATATCGATGAAGATGGTAATTCTCAATGG
ATGTTCGAAGCTAGAAAGAAAAAGAAAGGTGCCAAATCGAAGACGTTAGC
AGCAGAATCACGTTTATTTTGGTTGGGTTTGGTTATATTTCCGATCATCT
GGGTTTTCCTGTTGGTCGTCTCGTTGTTATCTTTCAAGTTAACTAATGTG
TTGATCATATTCGTGGCGAttgtgctgacgtcatcaaatctTGTTGGGTA
TATCAAATGTAAGAAAGATGCTGGTAAAGATGTTCAATCAATGGCCAGTA
ATTTCCTTGGAAGACAAATACTAACACAGatGTTCAAAGCAAATACGACT
AAAGAAGAAGGTGGGAGCAAAAC

Run BLAST on NCBI

protein sequence of TCONS_00023098-protein

>TCONS_00023098-protein ID=TCONS_00023098-protein|Name=TCONS_00023098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MLDDTEDIALNFGDEGAGKNKRFKHPVAAFFHIVFRLLALVFYFLANLFT
NSFVTMFVILVLLLSFDFWVVKNVTGRLLVGLRWWNYIDEDGNSQWMFEA
RKKKKGAKSKTLAAESRLFWLGLVIFPIIWVFLLVVSLLSFKLTNVLIIF
VAIVLTSSNLVGYIKCKKDAGKDVQSMASNFLGRQILTQMFKANTTKEEG
GSK

Run BLAST on NCBI

transcript from alignment at sc0000441:190115..194362-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023098 ID=TCONS_00023098|Name=TCONS_00023098|organism=Clytia hemisphaerica|type=transcript|length=4248bp|location=Sequence derived from alignment at sc0000441:190115..194362- (Clytia hemisphaerica)
TCCAGAAAAAAAAATTATTACAAAAATAATTTTACAAAAAATATAAAGAA
TATCATACAATAATGTTAGATGATACAGAGGATATCGCATTGAATTTTGG
TGATGAAGGTGCTGGCAAAAACAAACGCTTCAAGTAAGTCATTGTTTTGG
TTTGTTTGTATGTCATGTCGTATCCGTTGTTGTGCGGAATAAACAATTTT
TGCCGATTTCACTGTTACAGTTGCCTCTCTCTAATTTGACCGTCAGACTT
TTATTGTGACTTTTCATCCAATTATAGAGAGCACACTACTTTCCAATCGA
GGGAACCAATGTTTTAGTTCGAATTAAAAAAAGCGTCGAATTTACTAGTT
TTACCTGTAATGTAACTATACACCTTTTCGATCGTAGCCGCCAATTGCCG
CCCGGGCATTTTCCCCCCTAAATTCGATCCAATCCTTTTTTGATACCTTT
TTCTATTGTACATAGGTGTGAAAAAAAGACTGCGGCGGTTTTAGGGTGGT
TAGACGAACAAAAAAATGCCAGCGTGGCAATTGGTGGCTACGGTCAAGAA
GGTGTATCGCGGACTTTCATAAAGATTTTCCGGGCCTAATTTGCGGGCCT
TCTGTCAAATAATCTCAAAATCTTATCTACTTTCAAACTAGCCGACATAC
GGTTGTGTCCAACGAAAGATGCTACGGATCCTAAGGGTTGACACCTAGAA
TACCACATCAATGTCTCATCATTTTATTTATATCTTTACAGACATCCCGT
AGCAGCATTCTTTCACATTGTTTTTCGTTTACTGGCTCTCGTCTTCTACT
TTTTGGCAAATTTATTCACCAACAGTTTTGTGACGATGTTCGTGATCTTA
GTTTTGTTATTATCGTTCGACTTTTGGGTGGTGAAGAATGTGACAGGACG
GCTATTGGTTGGTTTGCGATGGTGGAATTATATCGATGAAGATGGTAATT
CTCAATGGATGTTCGAAGCTAGAAAGGTATTTCGTATTCCAGTGTTAAAA
TGTCATCCGTCTCAGACNGAAATTGCCCAAAAAAGGGATGTTCCACCAGT
GGGATTTTAGGGGATTTTTTCCTGAGGCATAAGCATCCTATAGAGAAGGT
CTGGAGAAAGTTTCAGCTATACATTATTTTTTTCCTGTAAATTATGCTAA
ACGACCCCACTAATAGGTGTGAAAAAAAGACTGGGACGGTTTAGGGTGGT
TAGACGAACAAAAAAATGCCAGCGCGGCAATTGGTGGCTACGGTCGAAAA
GGTGTATCGCGGACTTTAATAAAGATTTACCGGGCCTAATGCGCGGAGAC
TCTGTCAAATAATCTCAAAATCTTATCTACTTTCAAACTAGCTGACATGC
GGTTGTGTCCAACGAAAGATGCTACGGATTCTAAGGGTTGACCTACTGGC
GGATTTAAAACTACGTCGGACACATGCAAAGGAGTGTAACGCTCGTTAAG
AGACAATAAAATTACAATTACAAATCTCTTCTTCTGATAAGTTTGACGTG
GTCTAAAACTGCCTATGTTGGCCCTCCAGAATATTCCATCAATATGTCTC
ACTAACATTTTATTTATATTTTGACAGACATCCCGTGGCAGCATTCTTTC
ACGTTGTTTTTCGTTTACTGGCTCTCGTCTTCTACTTTTTGGCAAATTTA
TTCACCAACAGTTTTGTGACAATGTTCGTGATTTTAGTTTTGTTATTATC
GTTCGACTTTTGGGTGGTGAAGAATGTGACAGGACGGCTATTGGTTGGTT
TGCGATGGTGGAATTATATCGATGAAGATGGTAATTCTCAATGGATGTTC
GAAGCTAGAAAGGTATTTCGTATTCCAGTGTTAAAATGTCATCCGTCTCA
GACGAATTTCCGTCTCAGAGAAATAAAGAGGCTTTTCCGCCTCAGACAAA
TATTTGTTTCAGTGTCAAGTATGTAAAAAGGCTTTTCCGTCTCAAAATTC
TGCACACCAAATGTTTTGAAGAATTTGTGATCATTTGCTGCGTAAAATAC
GTTTTCGCTTGAGATTAAAAACCTTGCTATGACCACTGTCCTGTTCTCAA
TTGCTAACAAGACTTTCTCAATATAATATCTAGCAAAATGTGAGAAAAGA
AGTTTCAGTTTTGCAATTTCTGGACAGGTCAGGGGGGGGGTACAGAGACA
GGGTACTAACCCATAGGATATTAAATTGATTTTTTACTAAAATTTTGTTT
AGTACCCCCCACCCATATTTAGTACCAGGTACTACTTCATTGTTTTTCAG
ACTGAAAATTGAAAGATAATCTAAGCAAACTATCAATGATGGAGTCAGAA
GCTTTTGTCCTTTGATTTTCATCACACACTTCTTGACCATTTTGGAAGTT
TTGTCTTCAAAAAAATCAAAAAATTTCTCAAAAGAGTAAAAAAAAATTGT
CGATTAAAAAATTGTCAAATCAAAAAAATTGATAAAAGTCAAAATATTAC
AACTAACTACTATTTTTATTGAAAAACAGCAAAATTCTGTGAAAAAGTAC
CCAAATAGTATTCTGTACTTACTTGAAGAGTGAAAAATACCTNGCATGTT
GCTTGTTTTATTGAAAAACAGCTAGATTCTGTGAAAAAGTACCCAAATGG
TGTCCTGTACTTGCTTGAAGAGTGAAAAATACACACCTCACCCCCAAAGT
AGTACCGGGTACTAACTTTTTTGAAATGCAAAAATAGACACCACCACCTG
GCTATGGGTCAGTACCCTGTGTCTGTACCCCCCTTGGACAGGTTCCTTAT
TTTAGGATCGTCTTATTGATTTTGATCTAATTATAAATATCAATATTTTG
AAAGTTATCTTCCATTATAAAACTAAAAAGCACATCACTTTAGTTTTTTA
ATGGAAGATAACTTTTGAAATATTGTTATATGCCTCTGGTTCTTAACTAA
TCGGGCACTTTTATGGCATTGATTTACCACACTTGTTCCAATTAAAAATA
AGACAGTCAATAACCATGGTTGATTCTTACTTCCATGTTTTCTAGAAAAA
GAAAGGTGCCAAATCGAAGACGTTAGCAGCAGAATCACGTTTATTTTGGT
TGGGTTTGGTTATATTTCCGATCATCTGGGTTTTCCTGTTGGTCGTCTCG
TTGTTATCTTTCAAGTTAACTAATGTGGTAAGGGGCCTATTCATGATATT
CATGATATGCACCATTGCAATGTTATCTACGGATCAAACAGCTGATTGGT
TGAAAGTGACGGATTGCCTGATTTTACATCACTTACAACCAATCAACTGT
TGGGGTCCGTGATGCAATGTTTAGAAGACATTGCAATGGTGCATATTATG
AATACAAAGGCCAAAAAAATAAGTTTACTTCATCTTTGGGTGGGACCGGG
TTGAGAATTTTCTGAAATTTTGCATCTTTTCAATGAAACCGTACTACAGG
ATAGTAAACACAAATCACTCCCTAAGCATTTTTGTTGATTGAATATAAAA
TCTCCTTGATTTTTTGTTCCTTCTAATTTGTACACTTGTGAATTCGGTAT
TAAAATTTTCCTTGCAGACCATATTTTGTTCATTGATTTTCCTTCAAATC
CAGGAGGGTTAGATTCGGTTATTTTCTTTTTCCGTTCAATAGTTGATCAT
ATTCGTGGCGATTGTGCTGACGTCATCAAATCTTGTTGGGTATATCAAAT
GTAAGAAAGATGCTGGTAAAGATGTTCAATCAATGGCCAGTAATTTCCTT
GGAAGACAAATACTAACACAGGTAGCAAGTTTTAAAGGAAATTTTTTTAC
TAATTGGGCTGTTCCCCAGAAATATGTTTCTGCTCCCTATGTCGAGGAGG
TGTGACGTCCAGGGGTGGTCTGGAAAATAAAAAATTAGGGGGTTGTTTTT
TGTTAAAAGGCCAGTAAATAAATGGTCAGTAAAATGAGGTGGCAAATCCA
GGGTGGTCCAAAAAACGAGAGAAAATAATCCAAGAGGGTTCTGAAAAATT
TTTTCCTTTCCCCAAAAAGACCTTCTCAACATAGGGGTAGAATGGTAATG
GCCCATTTACTCGTACTTATAAATAAATGATCTCTTGGAAGAATTTCTGT
TCTTTAAGGTAATCTCATTCGGTAAATATTGATATTTTCTTGTTTTTAAA
TAATTTTTTTGTTCGATTTTTCAAAAATACTCCAGATTTAGAAAATGGAA
AAAGTGCTTCCAAAAGCATCTATTCTCTTAATATCTATTTTTTTCCTTTT
TCAGATGTTCAAAGCAAATACGACTAAAGAAGAAGGTGGGAGCAAAAC

Coding sequence (CDS) from alignment at sc0000441:190115..194362-

>TCONS_00023098 ID=TCONS_00023098|Name=TCONS_00023098|organism=Clytia hemisphaerica|type=CDS|length=3045bp|location=Sequence derived from alignment at sc0000441:190115..194362- (Clytia hemisphaerica)
ATGTTCAAAGCAAATACGACTAAAGAAGAAGGTGGGAGCAAATTGATCAT
ATTCGTGGCGATTGTGCTGACGTCATCAAATCTTGTTGGGTATATCAAAT
GTAAGAAAGATGCTGGTAAAGATGTTCAATCAATGGCCAGTAATTTCCTT
GGAAGACAAATACTAACACAGAAAAAGAAAGGTGCCAAATCGAAGACGTT
AGCAGCAGAATCACGTTTATTTTGGTTGGGTTTGGTTATATTTCCGATCA
TCTGGGTTTTCCTGTTGGTCGTCTCGTTGTTATCTTTCAAGTTAACTAAT
GTGACATCCCGTAGCAGCATTCTTTCACATTGTTTTTCGTTTACTGGCTC
TCGTCTTCTACTTTTTGGCAAATTTATTCACCAACAGTTTTGTGACGATG
TTCGTGATCTTAGTTTTGTTATTATCGTTCGACTTTTGGGTGGTGAAGAA
TGTGACAGGACGGCTATTGGTTGGTTTGCGATGGTGGAATTATATCGATG
AAGATGGTAATTCTCAATGGATGTTCGAAGCTAGAAAGATGTTAGATGAT
ACAGAGGATATCGCATTGAATTTTGGTGATGAAGGTGCTGGCAAAAACAA
ACGCTTCAAATGTTCAAAGCAAATACGACTAAAGAAGAAGGTGGGAGCAA
ATTGATCATATTCGTGGCGATTGTGCTGACGTCATCAAATCTTGTTGGGT
ATATCAAATGTAAGAAAGATGCTGGTAAAGATGTTCAATCAATGGCCAGT
AATTTCCTTGGAAGACAAATACTAACACAGAAAAAGAAAGGTGCCAAATC
GAAGACGTTAGCAGCAGAATCACGTTTATTTTGGTTGGGTTTGGTTATAT
TTCCGATCATCTGGGTTTTCCTGTTGGTCGTCTCGTTGTTATCTTTCAAG
TTAACTAATGTGACATCCCGTAGCAGCATTCTTTCACATTGTTTTTCGTT
TACTGGCTCTCGTCTTCTACTTTTTGGCAAATTTATTCACCAACAGTTTT
GTGACGATGTTCGTGATCTTAGTTTTGTTATTATCGTTCGACTTTTGGGT
GGTGAAGAATGTGACAGGACGGCTATTGGTTGGTTTGCGATGGTGGAATT
ATATCGATGAAGATGGTAATTCTCAATGGATGTTCGAAGCTAGAAAGATG
TTAGATGATACAGAGGATATCGCATTGAATTTTGGTGATGAAGGTGCTGG
CAAAAACAAACGCTTCAAATGTTCAAAGCAAATACGACTAAAGAAGAAGG
TGGGAGCAAATTGATCATATTCGTGGCGATTGTGCTGACGTCATCAAATC
TTGTTGGGTATATCAAATGTAAGAAAGATGCTGGTAAAGATGTTCAATCA
ATGGCCAGTAATTTCCTTGGAAGACAAATACTAACACAGAAAAAGAAAGG
TGCCAAATCGAAGACGTTAGCAGCAGAATCACGTTTATTTTGGTTGGGTT
TGGTTATATTTCCGATCATCTGGGTTTTCCTGTTGGTCGTCTCGTTGTTA
TCTTTCAAGTTAACTAATGTGACATCCCGTAGCAGCATTCTTTCACATTG
TTTTTCGTTTACTGGCTCTCGTCTTCTACTTTTTGGCAAATTTATTCACC
AACAGTTTTGTGACGATGTTCGTGATCTTAGTTTTGTTATTATCGTTCGA
CTTTTGGGTGGTGAAGAATGTGACAGGACGGCTATTGGTTGGTTTGCGAT
GGTGGAATTATATCGATGAAGATGGTAATTCTCAATGGATGTTCGAAGCT
AGAAAGATGTTAGATGATACAGAGGATATCGCATTGAATTTTGGTGATGA
AGGTGCTGGCAAAAACAAACGCTTCAAATGTTCAAAGCAAATACGACTAA
AGAAGAAGGTGGGAGCAAATTGATCATATTCGTGGCGATTGTGCTGACGT
CATCAAATCTTGTTGGGTATATCAAATGTAAGAAAGATGCTGGTAAAGAT
GTTCAATCAATGGCCAGTAATTTCCTTGGAAGACAAATACTAACACAGAA
AAAGAAAGGTGCCAAATCGAAGACGTTAGCAGCAGAATCACGTTTATTTT
GGTTGGGTTTGGTTATATTTCCGATCATCTGGGTTTTCCTGTTGGTCGTC
TCGTTGTTATCTTTCAAGTTAACTAATGTGACATCCCGTAGCAGCATTCT
TTCACATTGTTTTTCGTTTACTGGCTCTCGTCTTCTACTTTTTGGCAAAT
TTATTCACCAACAGTTTTGTGACGATGTTCGTGATCTTAGTTTTGTTATT
ATCGTTCGACTTTTGGGTGGTGAAGAATGTGACAGGACGGCTATTGGTTG
GTTTGCGATGGTGGAATTATATCGATGAAGATGGTAATTCTCAATGGATG
TTCGAAGCTAGAAAGATGTTAGATGATACAGAGGATATCGCATTGAATTT
TGGTGATGAAGGTGCTGGCAAAAACAAACGCTTCAAATGTTCAAAGCAAA
TACGACTAAAGAAGAAGGTGGGAGCAAATTGATCATATTCGTGGCGATTG
TGCTGACGTCATCAAATCTTGTTGGGTATATCAAATGTAAGAAAGATGCT
GGTAAAGATGTTCAATCAATGGCCAGTAATTTCCTTGGAAGACAAATACT
AACACAGAAAAAGAAAGGTGCCAAATCGAAGACGTTAGCAGCAGAATCAC
GTTTATTTTGGTTGGGTTTGGTTATATTTCCGATCATCTGGGTTTTCCTG
TTGGTCGTCTCGTTGTTATCTTTCAAGTTAACTAATGTGACATCCCGTAG
CAGCATTCTTTCACATTGTTTTTCGTTTACTGGCTCTCGTCTTCTACTTT
TTGGCAAATTTATTCACCAACAGTTTTGTGACGATGTTCGTGATCTTAGT
TTTGTTATTATCGTTCGACTTTTGGGTGGTGAAGAATGTGACAGGACGGC
TATTGGTTGGTTTGCGATGGTGGAATTATATCGATGAAGATGGTAATTCT
CAATGGATGTTCGAAGCTAGAAAGATGTTAGATGATACAGAGGATATCGC
ATTGAATTTTGGTGATGAAGGTGCTGGCAAAAACAAACGCTTCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012977	XLOC_012977	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023098-protein	TCONS_00023098-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000441	supercontig	sc0000441:190115..194362 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
177.224	165.771	119.747	123.55	38.1568	29.0884	47.7749	54.7935	43.7589	37.6062	35.8611	27.5076	23.5988	18.0201	18.6541	24.7482	33.8882	34.1937	13.2627	23.4446	29.2968	25.2033	62.7733	59.8002	22.6575	23.9578	27.3517	18.0199	47.2276	48.0441

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008564	DUF846_euk

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00023098 vs. Swiss-Prot (Human)
Match: TV23B (Golgi apparatus membrane protein TVP23 homolog B OS=Homo sapiens GN=TVP23B PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.681e-56
Identity = 90/190 (47.37%), Postives = 129/190 (67.89%), Query Frame = 3

Query:   69 DDTEDIALNFGDEGAGKNKR---FKHPVAAFFHIVFRLLALVFYFLANLFTNSFVTMFVILVLLLSFDFWVVKNVTGRLLVGLRWWNYIDEDGNSQWMFEXXXXXXXXXXXXXXXESRLFWLGLVIFPIIWXXXXXXXXXXXKLTNVLIIFVAIVLTSSNLVGYIKCKKDAGKDVQSMASNFLGRQILTQ 629
            DDTED++L   +E      R    +HPVA+FFH+ FR+ A++ Y L  L ++SF+T  V ++LLLS DFW VKNVTGRL+VGLRWWN+IDEDG S W+FE+RK+          AESR+FWLGL+  P++WV     +L SF++  + ++ + +VL  +NL GYI+CK  + K + SMA+++ G+Q L Q
Sbjct:    8 DDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQ 197

The following BLAST results are available for this feature:

BLAST of TCONS_00023098 vs. Swiss-Prot (Human)

BLAST of TCONS_00023098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TV23B	6.681e-56	47.37	Golgi apparatus membrane protein TVP23 homolog B O...	[more]

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TCONS_00023098 (transcript) - C. hemisphaerica