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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002092 ID=TCONS_00002092|Name=TCONS_00002092|organism=Clytia hemisphaerica|type=transcript|length=2558bp
TAGGAAATGACCATAGCAtacaaataaagaattttcttAAACGCGATCTG
TAACAACACTAAACAAGAACGATGGTCAAAGAAAACACAGAAAAGGGTGC
CCCTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCA
TGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGACTCC
GCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAGACCC
TTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGTAACG
TACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTACGCT
GCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGTATCA
AATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCTTATT
CATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAAAAAA
CTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCATATTA
CCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTCAGCT
TGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGGAAAA
GGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGAATGG
GAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAGAAGG
AGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagccaAG
GTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAACAAAC
CCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCTAAAG
AAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCCAACC
TCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTACTTT
AGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACACAAC
AACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTCTGAA
ACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATCAAGA
CAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGACAAC
GGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTCGAAC
TTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTACCTC
AGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCTCCGC
CACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAGCGTT
GTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTCTCTC
CGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACCTCTC
GATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCGAGAC
TTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCAACGC
AGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCTCCCT
ATCGCTCATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGAGACA
CTTTAACTAAATGAACTTGTTCATTCCATATAGatgaaatttatttaaaa
tttatacaaaaaagagaaatttaagCTCAGGATTGAAacgacatttttta
aatgctaGATCCGCAACtgtttctttacttttttagaataatttcttctt
catattttttttttgaaaacaatatatttttttccgcagcaattttatat
atatatattttacctacaatgttatttattttaataaagCCCACGTGGGA
AGCTTTATACCTAGAATATAAtagtaaaaaaaactttttgcatatatttt
ttgaattagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTTATCT
TTCTTAAACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTTTCAG
GGTTGGCTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaactcCA
GTTTAAAAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTGCAGA
ATACACTactggaattttttttacccctCACCAATTTAGAACAGTTCATT
TTCTACCTTAAACGATTTTTACTGTACATactcaaaaaatattctcaact
cAACGAAAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgttattt
tgtttaaaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGGAAAg
ctttgtttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCGAAAA
GAGTAACAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATCAGTA
CAACATTACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCATATT
GAGGTTTA Run BLAST on NCBI transcript from alignment at sc0000018:929081..937292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002092 ID=TCONS_00002092|Name=TCONS_00002092|organism=Clytia hemisphaerica|type=transcript|length=8212bp|location=Sequence derived from alignment at sc0000018:929081..937292+ (Clytia hemisphaerica)
TAGGAAATGACCATAGCAtacaaataaagaattttcttAAACGCGATCTG
TAACAACACTAAACAAGAACGATGGTCAAAGAAAACACAGAAAAGGGTAT
TAGATTTTTctgttcatatttttttttttcgccaGATGTTTATTTTTGAT
ACATCGGCTCCCTTTTTTTTGCGAGAAAtctattgtttttgtttgtccca
aaattttattttcgtaTTATTAAATTTGGATAAACTTTAATTCCTTCTTG
TTGCATTTTCAATCAGAATTttattttcccataaaattAACATCAGTGTT
TTTTaaggaaacttttttttcaactctCGATCTTTCTAACGTTTGACTCT
TAAATCAAGTTTACTATTTAAGAacttaaaacttttcaaatattgtttCG
ATAAACTTCAATTTCTTGgattttaaattgtttatttGTTAACTCTAGAT
GTTTTTGGAGCCTTTTGTGAGGTTTAATCATGTTATTGATTGACGATAAA
GTGAAATGGGGATGGActtttttgacactttcaaaTGTCCCAACCTTTTA
ATATATTAAAGTATCGAATTTATGGAAAGTGCTCCATTTTAAGATAGTAT
TCGCCAAGTTGTTGTATCACACGCTTTCAAAGTttataatcaaaacaaag
tatAGTATTAAATCAACATGCTCCTTTCATCGATGCTATATAGTCCCTCA
CAAAGAGCATTGCTTacattaaataaataaataaacatatAATTTAAGCT
CAATAGTATAAGATAAATATAAAATGTTATCTTTAAGTCTGGTAGGTTAT
GAAGGCACGTTAGATTTAATAGTTCTGTCAACGAATTTTGACATTTAAAT
TATACCTTAGAAAAACAAAACTCTAAACTATAATGGATAATAATGTTTAT
GTTGCATTCTTGTAGACCGTGTATACAAAGGTTATCCAGGTCTTTGCAAG
GACCAATCCTTTTGTCTGGTGATGTTTTTAAACATGATTTTTCGATGTTT
TAACACTATCTTATATACCTCaaccaaaatattattttagttTTGTGTTT
CATACGTTTCTCTatatttttgtgtttactttacGATCGATTGCCTTTCT
ACTACCCCTTTTTATAAACCATCCTATATCTTGACTATGTAAATAAAGTC
ATAAATGAAAGGACAAATTATGATTTCTACAAGTGTATAAGAAATCCTTC
AATATATAAAACCAATTTCAGTTTGTCGTATATAGAAAAATCGAGACCAC
ATTCTCACAGACTTTCTTAACGCGCGTTTTTTCGCTCATGTGATTTTCTT
TGAGACGCTATCGTATTTCTTTCTCCTCGGaaacagagaatttttttttc
attccatgCGTGTTGTGTGTTCGGTTGATTCGACTCTCTAATGGCTTGTA
AATTCTTTTCCTTAAATGCAACGAGTTGTGTCTTTCAAACGTCCTCTCTG
TGCGTGTCTGTCTTTTTTGGGTCTTCGTCAtcaattttgtgatttttttt
gctacTGTACTGATTTTGACTGCTCGTTACGCAGATCGATCTTTCACTCA
AAGACCATTGATAAAGATTTTTCATGTAAATACTTTCAAAACTCCACACG
TCTCCCGATTGAATACGTGAATACCgtaagaaaattgtaaagaaaaacta
attttggtgagagCTTATTTTAGGGAACGACAGAATAAAAACCCTTACGG
AAACAAAATGCTcgtattccattgaaaacgaatATAGAATGCATTAAAAT
AGAATAAACTTCTAGGTTCAAAACTTTAATGAATTTCTAATTCATTGGGT
ATCaaaatgtatttaaattctAGACTTTAAATTACATATAAATGAGCGAT
TTAGACTAAATTTCGAATgacttaaaaaatttcattttgaagacaAATTA
TTTTTGCGAGGAagcattttaattttggcgaatatGATTTACTCAAAGGA
ATTTGGACTCgctaaaatttaccaaaatttattcttatataGAGCCCCTT
TTACAGTAGTTGGCATCGTATTTTAAATGATTGGCCATGTTAAATTTGTT
TCAGAAAGGAATTTTCATCCCCTTAAAAGGTCTAAATAGTTTGTAAAATT
ATCCTTATGGAACGAGCCAAACTTCTTAAAAGTTGTAAAAGTACTTCACA
AGAAATGGTGATAAGCTATTTTTAGGAGAGCGTAAGAAATCTTTGAACTT
TCATTGAAACGTCATTCGGAATCGtgtatgtatttttttctcCGTTTTTT
TTAAGTCACGTCGCGTTTTGCTTAATTTTCGGACCCAGACCATTCTCCTT
AACTTgaacctctttaactcgaatgcctccttaactcgaacaagctttAT
CGTCCTTGCAgctaacaatgccttataaaccatactctataactcgaaaa
tttccttaaatcgaacaaatttgtgttccccatgCGCGCTCGATGAGTTA
TATGGAAATTCCATGGGGGCCCCCTCCATTGTATTTAAAGAATATCATAT
TTTGCGATGAGGTCATTTAAATAATTCTTCACTGAGCAGAATAATCAGAG
TCTCGTTTAATATTTTGCTTGCCACCCTGACTTTTACCGGCCTTCTctga
tatgaaaaaaaatagatttctgtCATTTTTCTCTCTGGTAGCTTCAGGGT
ATTTAGCTTTGCAATGGTCACGATATATAAGATTATTGTAAACATGAAAG
AAATACAAGTCATTTAAATTTCtaatggaaaatattttacccGGAAAAAT
TTTGCTGAAAGTATAAGGGGTCTTTttttattctgaaaaatttaaggGGA
ATCTAAAAATTGGATGATGATTAAAATGTAGACAAGTTTGTTGATTCACA
CTAATACGGGGAAAACACTTGAAAACATAGCATACTTTCGTATTATGACC
CATATAACAAACACTTGATATAATACTATCGTATGCTTGTTATTAATGTT
GTATCTATTTGTTATACCACTGACAAATTGATGCAAATAGTATATTCAAT
TCTAGGTAAATTTTGTCCCATTCCAACTTTTGAAATAATGATTTGTCAGA
AGGTCTTTTTCATAGGGACCATTTTACTATCAGTATCACAGCCATTTAGC
CCTTTTTGCTACAGGCCAGTAAACAATAAGTGGACAACTTCCAAGCTTTC
GAGAATTTCTATACTTATAAACATTTGTCtaaatttgatatgaaaaatgA
TCGAAATTAAACGTCAAACTTTCAATGTCTTATCCATCGTCTACGAAGCG
AGACAAAATTCACGGAAGATAATCTTTTAGAAAGGAAATGGGTGTGAAAA
GAGACGACACTAGAATTGGAATGTTCTACTTAATCCTGTGGATTATTTAC
GCGTCTTTTCTTGTCTTACCGCACTTTTTGGCAGTTTTACCTTTTCGTGA
CTTTTCTATTTCACTTTTCGTTATCTACTCCATCACATATTGAATTATAA
CCCGAATTATTTAAGTCAGAAATTATGACAgtttgattttgtaatttcct
accatAAATATCTTATTCCGTCAATTATCTAGATTATTATTAGGATACTT
TTGAGACATTCCTCTAACGAAAAAAAATCACGTCAAAAGTCAAGTGTCTG
AATGGCATTGTCGGCTTAGGAAATATTTTCAACGAAGGTGTGCACCTTTT
CCACTGTGTATACCATATATGTCTCATGGAACACCCCTTTGCAGGTGAAA
AAACGTCACATCAACTTCTATAAACACGTCACTAAGATAAACAAAATTTA
CGCACATTTAAATTCTTGAGAACGCGCCAGTCCATGGAAGCTCAGATCCG
TGATTTTTGGTAAATATCCTACTTTAAGATCAACGGgatattattatcca
tatagcggtcattaagtaagccattaaagattcgaacggcgggcggtatt
gaaaggttctatgactcaaatagtcatatccgcgctgagaaaactaaggc
gtcgcgcttcagagggctgaaataccattaaccgccctggttatagggcg
ataacgtcatttgcgacccgctcggaactttattgaagtcgttgcattga
agcgaaaagactaaactaacgtcagaaaaaaacactttttggtcatttgc
gacccgctcgcaagggtactcaaaacttgttaaagtccttgcattgaagc
gaaaagacttggccgacgctagaaaaaaacgttgtttgaatttccaatat
ggataataatagtaatagcgttaagctttcgttcgttgttgtcattaatt
ctgcccttgcagtttgattattagccctctagtgccatttgcgccctccg
cttcgcgtcgggcccaaatgacactctcgggctaataattaaactgcgcg
ggcagaaaataacaacaacgacctcaaactgaacgctattgttataataT
CAAACACTCTTAAATCACAGATTAATGCATTATAAGTCATTGGTTAAATA
CGGGAATATGAACATAATAAAACTTGTAATACTCCTTAACTATTGTCAAC
TCGGAATCAATAATCAGTCAAAACAAATTATTAACTTTTTctatttgacc
aattttgtctTTTTGCGGGACGCGGAATCAAGAGAGAAAAGGTGCGAATA
GTATAGGTAAACAAAACTGATATTAAAACCTATTATCAAAGTGTCAATTA
GGTAATTAAACATAATTAaagtaagaaaatattaaatcaTTAAATATATa
atctgaaaaatggcaaaataagAAAGAGGGGGAAATAAGGGGAAAGTAAC
GAATAACACAAAACCAACAAGACTCATTTGTAATCAATAAGAATGACTTC
CATTTTGTGGGGTGTTAATTTTTTCCTTCACGCGTCGTCGGCTTTTTGTC
AGTGTCATCTAAGTTCCGCTATATCAAAAAGGCTAGTTCACACTGAGAGC
CGTATTCACACAGCTTACACATAAATCTGAACTGAGTATTCAACTCACAC
TTTTATATACTGGCGGAGGAAAAGAAAGGGCTTTTAGTGATAAAGGAACT
CACACATTGAGCTTTTCATCATTAATCAACTGATAATTTTACTTAATTTG
TGTTGCTTCACTCACATGAATCACTAGAATTTTGCATATTGAAATCACTT
TTAAATTTACCTTGTGATTGCTGGTTGGAAAGAAAAACTAACTTTTGAGT
AAGatcatttaattttcaaaatagaagtTGTTTTTTGTTATTCTTGCTAA
ACTTTATATTAGATCCTGTATTCTACCACGTATAGAATTCTGACtgatta
ttttttcttaatttttttctgaacttaAATTCAAAACACAGGGCATGTTT
TCAAAGAATACATTTCAGTGTCAGAAGGTTCTCAATATCACTTCTTGTTT
TCATTCTTAATAATCTTGAACCAAATGATCGAGATTCTGACTGATTGATG
TCAAAAGTTTATTACTTTAAAACTAACATTTCCCGCTTCgtatttttttc
tataatttttcatttttatcaagtTATAAAATCACCACAAACTTTTAAAA
CTCACTCGAACGACGTTAAATAACGTTAAAAGATTGAGCAAATCTTGTTA
AGTTTTGGCATTGTCAAATTCATGTCATTATAGTTGCGCGCTTGTTAGGT
GCTATCTATTCAAAttaattgtgtttttttttgtttgatcagtattaaaa
actaaatattttcaattttaatttgttCTAATTTTTCAGGTGCCACTGCA
TCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACAACCNTTTTCAG
GTGCCCCTGCATCGTCAGCGCCAGAGACGACTCCTACGACATCTGCGACA
ACCATGGAACAAGTCCCTTTCACCGGCGCTGCCTCCACCACGGTGGTTGA
CTCCGCCACCTCCACAGCTAACCCAGCTCCGTATTACACATACAGCCAAG
ACCCTTCATCCTACACTGATTACTACAGATCTAGTGTTTACGCTAGTCGT
AACGTACCGCCCCCTTCGAGTCAGTACGCGAACGTCGCTAGTCCGTATTA
CGCTGCTCCGTACGCGGATCCTCATTACCACCACCATTACTACTCCCAGT
ATCAAATGCTCAACATGAACACACAACAAAAAGAGTTAGTCAAACCACCT
TATTCATACATCGCTCTCATCTCAATGGCTATCCAAAGCTCGCCAGAAAA
AAAACTAACACTCAGCGGCATTTATCAATTTATTATGGATCGCTTCCCAT
ATTACCGTCAAAACAAACAAGGTTGGCAGAATTCTATCCGTCACAATCTC
AGCTTGAACGAATGTTTCTTGAAAGTTCCCAGAGATGATAATAAACCAGG
AAAAGGTAGTTATTGGGCTTTGGATCCTGATTCCATCAATATGTTTGAGA
ATGGGAGTTACTTACGACGACGCAGGCGATTCAGGAAGAAAGACATCAAG
AAGGAGGATATGGGAGAGGGAGATGACCTccttgatgaagaagaagaagc
caAGGTATGGGCTAACACTACCCATGGTCGTATGCATCCACATCCTGAAC
AAACCCTTCATCTAGTAGGAGAAGGACGACAACCACAATTTCTTCCACCT
AAAGAAGACcatcaaaagaaaatcatgCATCCACATCAACAGAGTCTCCC
AACCTCACCATCCTTACAAGAGGCAACTCCCGGTGGTGGGCAGACCATTA
CTTTAGGCCAGGAACAACCTGCCATCCACCCTGCAGCTAAGATGAACACA
CAACAACCTCATCCTGAGGGCACAGACCAGGAAGGAGACTTGGAGCATTC
TGAAACAACTCCTAAAAACGGGGAAGTCACAGAAGAAGATAAACTGAATC
AAGACAAGGATAAAGCGACACCACAATCCGTTCATTTATACGAAAACGGA
CAACGGGCCACTTATCCGGAAAGCACATTAACATATACCAATTTAGACTC
GAACTTTTTAAGTTATAATAACTTGAACTATAGTTTTGCAGACACGAGTA
CCTCAGTGACGGCTGCACGTTACGCGGCTGAACGAGGTCTCACGGGAGCT
CCGCCACCTCTTGATTTTATAACTCGTGGAGCACCAACCGATATTTCAAG
CGTTGTACAACCTCGTGGTATGGAAGGCACAGGATCGGCAGCATCTCGTC
TCTCCGAACTTGCATCGTCATCTACCACCGACCTTTACTCTGTATCAACC
TCTCGATTCATGTCACCACCCAACAGTCCTTTCCCTAATGGTGAGAGTCG
AGACTTCTACCTAAATGCGGCCGCTGCAGCCTCAGCTTACAGCACGTTCA
ACGCAGTACCGGGGACCACTGACCAAGACCGTATTACATCTTTCTACTCT
CCCTATCGCTCATCAACGACATCCGCCTACCAACAGTATTAATGCTAAGA
GACACTTTAACTAAATGAACTTGTTCATTCCATATAGatgaaatttattt
aaaatttatacaaaaaagagaaatttaagCTCAGGATTGAAacgacattt
tttaaatgctaGATCCGCAACtgtttctttacttttttagaataatttct
tcttcatattttttttttgaaaacaatatatttttttccgcagcaatttt
atatatatatattttacctacaatgttatttattttaataaagCCCACGT
GGGAAGCTTTATACCTAGAATATAAtagtaaaaaaaactttttgcatata
ttttttgaattagatttttttGTGAACTTTACTCTCTTGTCAAAAACCTT
ATCTTTCTTAAACCCTAGAACAACTCTGATACCCAAATTAGTCGTCGTTT
TCAGGGTTGGCTTAAGTAAGTGCTTGGtctttcaaaataacaaaaacaac
tcCAGTTTAAAAGCTCATACGATTAATTTAAGACCTTGTTTCCAACTTTG
CAGAATACACTactggaattttttttacccctCACCAATTTAGAACAGTT
CATTTTCTACCTTAAACGATTTTTACTGTACATactcaaaaaatattctc
aactcAACGAAAAACAGGCCTTTTTAAGGTCCTCTTAGAAGGGAAAtgtt
attttgtttaaaaatgttgGCCTCTTACATTTGTTTAGTCTCAAATTAGG
AAAgctttgtttttgtgtttttgcaACCAATATTATTTATTTGAGCAGCG
AAAAGAGTAACAAAAACATTAGAAAAGGCAATATACACAAGCTAGAGATC
AGTACAACATTACTTTTCAGAAAGGCTAGATGAGGATAGACTTTTCTTCA
TATTGAGGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002092-exon-sc0000018-1491911889:929081..929176 | TCONS_00002092-exon-sc0000018-1491911889:929081..929176 | Clytia hemisphaerica | exon |
| TCONS_00002092-exon-sc0000018-1510915933:929081..929176 | TCONS_00002092-exon-sc0000018-1510915933:929081..929176 | Clytia hemisphaerica | exon |
| TCONS_00002092-exon-sc0000018-1575043694:929081..929176 | TCONS_00002092-exon-sc0000018-1575043694:929081..929176 | Clytia hemisphaerica | exon |
| TCONS_00002092-exon-sc0000018-1491911889:934831..937292 | TCONS_00002092-exon-sc0000018-1491911889:934831..937292 | Clytia hemisphaerica | exon |
| TCONS_00002092-exon-sc0000018-1510915933:934831..937292 | TCONS_00002092-exon-sc0000018-1510915933:934831..937292 | Clytia hemisphaerica | exon |
| TCONS_00002092-exon-sc0000018-1575043694:934831..937292 | TCONS_00002092-exon-sc0000018-1575043694:934831..937292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:929081..937292 + |
Blast
BLAST of TCONS_00002092 vs. Swiss-Prot (Human)
Match: FOXC2 (Forkhead box protein C2 OS=Homo sapiens GN=FOXC2 PE=1 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 3.195e-52 Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 3
Query: 426 KELVKPPYSYIALISMAIQSSPEKKLTLSGIYQFIMDRFPYYRQNKQGWQNSIRHNLSLNECFLKVPRDDNKPGKGSYWALDPDSINMFENGSYL 710
K+LVKPPYSYIALI+MAIQ++PEKK+TL+GIYQFIMDRFP+YR+NKQGWQNSIRHNLSLNECF+KVPRDD KPGKGSYW LDPDS NMFENGS+L
Sbjct: 68 KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 162
The following BLAST results are available for this feature:
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