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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=transcript|length=2579bp
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAacagtgaaaattttaa
atggcTTTCAATGTGGCAGATTTACAAACTTTATTTTCgttgaaaattga
agattgtCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAActtatttgatgaattttcaaaCATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCattaaagaaatataaaaacCTCAT
CCCAAAAAGATCCccaaagaaaaaatcaagaaagttgaaaaaggttgatg
tgaataaaaatacaaaacttcTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGatattcaattgtcaataaaaaacaatgt
tAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTtgaataaaaagtcaaaaagattCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCtccaaattcaaaaca
aagtaccttcactaaattgtccaaaaagAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTcactaaattgtccaaaaataGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT
GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC
CCCCAGTGGCCGGTAATTTGTACAATGTTGTGTTTGCAGATGGTGCTTTG
CCTTCATTGCACTCATCCGTAGGCAAGCAATCAACAAAATATCAGTATAA
GGCTAAGTATAAAAAGGTCGTAAGTAGACCTGTAAGTATAATTTTTTGGT
AAGTGTTTCCTCGGGTAGTTAAAAAACGTCAGGTAAAGTTTATACAGTCT
TAAAAAATCCCCTCCTTGATCATGGTTTTATTAGACCGGTCGGTAAGAAC
AAAATCATAAGAACAGGTACTACACTATAAGAACAAGATACTACAATGAT
ACTTAAATGTGCGAATGTTTAAGATGCGATATAATTTAGAATTTAGAATA
ATGTCTATTtcatttttcaccattttgtagcatattttttataatttata
aaatttatttagcTATTACATATTTTGTCTATTGAGATGgttttcaaatt
aaaatctTCTAGTCATGTTGTGATGTCAAAAGGGAAAAAATATCAGCTTT
TTTGGGGccaactttctttttaattcgAAATGTATTCTACTCAACATTAG
ATTTAGTCTAAAATGAAGAACAAAACACAGCGCTGTAAATATTGTACtca
gttttgtttatattaatgtaaaaaataat Run BLAST on NCBI protein sequence of TCONS_00001688-protein >TCONS_00001688-protein ID=TCONS_00001688-protein|Name=TCONS_00001688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
MAFNVADLQTLFSLKIEDCHNKKLESCLDIQTEREDIVPNLFDEFSNIAD
TGVFQEPFSLKKYKNLIPKRSPKKKSRKLKKVDVNKNTKLLSKEKVRSCS
PSFSIDSAVDLSADNSLLHTQKWFVDTDFDVDIQSNCDSGVCDFNISADA
VMKNLSDDIQLSIKNNVNADEFPEKRSSNKHDFDNIQSSITTNSSCSEKS
KLKALNKKSKRFKSKKPRQFKDSFRKHKESYMKLLDEQKCIVQHSRKESR
LSTINSLSDILLTNLDHAIPIIVEKEGQNVEHLGKSLTKEIEVQTLSNES
HFTESLMNMIYTPMKDNDDLQSNPLLIDPPESFCLPTKEVDAPAKTTNIL
STSCTINSETLADKDVSGKLTTVTSSSIDCPCDNNPDGNTLAGDKDLSCV
ILENSANVKSFNIKLFTEVDKIITKECATSPVKMKPRRRFIVQDDEDIPS
ALLEILNGPQEVKNPLSTPGQNTQIATADENDISMKTDSSSKTGHHTSIQ
ILDKNQTFDSSAPNSKQSTFTKLSKKSERVASDSDGXFTKLSKNSERVAS
DSDGSTCDTQDLPRPSNDFCVNLLNFYCTGLLARSDTAEENRSSFSEYSD
DE Run BLAST on NCBI transcript from alignment at sc0000011:770637..773891- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=transcript|length=3255bp|location=Sequence derived from alignment at sc0000011:770637..773891- (Clytia hemisphaerica)
TTTCATTCTTTTGAATTTCGTTTTAGAACAACTAACAGTGAAAATTTTAA
ATGGCTTTCAATGTGGCAGATTTACAAACTTTATTTTCGTTGAAAATTGA
AGATTGTCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAACTTATTTGATGAATTTTCAAACATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCATTAAAGAAATATAAAAACCTCAT
CCCAAAAAGATCCCCAAAGAAAAAATCAAGAAAGTTGAAAAAGGTTGATG
TGAATAAAAATACAAAACTTCTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGATATTCAATTGTCAATAAAAAACAATGT
TAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTTGAATAAAAAGTCAAAAAGATTCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCTCCAAATTCAAAACA
AAGTACCTTCACTAAATTGTCCAAAAAGAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTCACTAAATTGTCCAAAAATAGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAATTACATTATTCCAAACATGGATATCGGTTACCAATTTCTTT
GTGTTGGGCTTTGGTTGGTTATGTGTTATATATAAATTGATGAATCTGGC
CCCCAGGTAAATATACCGGCAACCTGTTTCTTAGGAACTGTTCCTTTAGA
GACTTGGATAATCTTTCAAATATTTATAGTTTAAGAAAACATACAAAAAA
ACTTTATTAGAACCTAACTTGTTCAAAATTCTCATTATGTATATAACTAT
CTGATTAATTAGTTTGATTATTTCAATGTTTTTAGTAGGTTANTATAACT
ATCTGATTAATTAGTTTGATTATTTTAATGTTTTTAGTAGGTTAAAAGCC
TTCTTATTGTTTTGTTTCAGTGGCCGGTAATTTGTACAATGTTGTGTTTG
CAGATGGTGGTACGTATAAAATCTATGGTAGTATCATCATTTTCAAAAAT
TTCTATTAAAATTATGAACTAAAAACTTTTCAGGTGTGTCTTAAACAAAA
TTAAAGAAAGTCGAAAGTTAAGTTCAAATCTTCAATTCTTATACAGACAT
TTTTCGTGTTTTTCAAGTATTCATACATCTACACACTTGGTATGTATAGT
TCCTTGCTTTTCCCATACCTTTAAATTTCCAAACAATGTAATATTTTGTA
AACAAAACTCTTCTTAAAACCTGTTTACTTTTTTGCATAAAGAAAACTAA
ACTTTTATTATACTACTATACTATAGACTAGGCATTGAAAGTTTGAATCT
AAATGGTATCTGGATCTCAATTACATCATTTTTGAAATGCTCTAATAACT
AAACTTTCTCCTCTCTTATAGCTTTGCCTTCATTGCACTCATCCGTAGGC
AAGCAATCAACAAAATATCAGTATAAGGCTAAGTATAAAAAGGTCGTAAG
TAGACCTGTAAGTATAATTTTTTGGTAAGTGTTTCCTCGGGTAGTTAAAA
AACGTCAGGTAAAGTTTATACAGTCTTAAAAAATCCCCTCCTTGATCATG
GTTTTATTAGACCGGTCGGTAAGAACAAAATCATAAGAACAGGTACTACA
CTATAAGAACAAGATACTACAATGATACTTAAATGTGCGAATGTTTAAGA
TGCGATATAATTTAGAATTTAGAATAATGTCTATTTCATTTTTCACCATT
TTGTAGCATATTTTTTATAATTTATAAAATTTATTTAGCTATTACATATT
TTGTCTATTGAGATGGTTTTCAAATTAAAATCTTCTAGTCATGTTGTGAT
GTCAAAAGGGAAAAAATATCAGCTTTTTTGGGGCCAACTTTCTTTTTAAT
TCGAAATGTATTCTACTCAACATTAGATTTAGTCTAAAATGAAGAACAAA
ACACAGCGCTGTAAATATTGTACTCAGTTTTGTTTATATTAATGTAAAAA
ATAAT Coding sequence (CDS) from alignment at sc0000011:770637..773891- >TCONS_00001688 ID=TCONS_00001688|Name=TCONS_00001688|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000011:770637..773891- (Clytia hemisphaerica)
ATGGCTTTCAATGTGGCAGATTTACAAACTTTATTTTCGTTGAAAATTGA
AGATTGTCACAACAAGAAACTGGAATCATGTTTAGATATTCAAACTGAAA
GAGAAGATATTGTACCAAACTTATTTGATGAATTTTCAAACATTGCTGAC
ACTGGCGTTTTCCAAGAACCATTCTCATTAAAGAAATATAAAAACCTCAT
CCCAAAAAGATCCCCAAAGAAAAAATCAAGAAAGTTGAAAAAGGTTGATG
TGAATAAAAATACAAAACTTCTTTCTAAAGAGAAAGTTCGAAGCTGTAGT
CCTTCATTTAGTATTGATTCAGCTGTTGATTTAAGTGCTGACAATTCACT
ACTGCATACCCAAAAATGGTTTGTTGATACTGATTTTGATGTTGATATAC
AGTCAAATTGTGATAGTGGAGTTTGCGATTTCAATATATCAGCCGATGCC
GTTATGAAAAACTTGAGTGATGATATTCAATTGTCAATAAAAAACAATGT
TAATGCAGACGAATTCCCCGAAAAACGTTCATCAAACAAGCATGACTTTG
ATAATATTCAATCAAGTATTACAACAAACTCTTCCTGCAGTGAGAAAAGT
AAATTGAAAGCTTTGAATAAAAAGTCAAAAAGATTCAAATCTAAAAAGCC
AAGACAGTTCAAGGATTCCTTTAGAAAGCACAAAGAAAGCTATATGAAGC
TTCTTGATGAGCAGAAATGTATTGTCCAACATTCTAGGAAGGAATCACGT
TTATCCACCATTAACTCGTTATCTGATATCCTTCTTACCAACTTAGATCA
TGCAATACCAATTATTGTTGAAAAAGAAGGTCAAAATGTAGAGCACTTAG
GGAAAAGTTTAACCAAAGAAATTGAAGTCCAAACTCTAAGTAACGAGAGT
CATTTTACTGAGTCCCTCATGAATATGATCTATACACCAATGAAAGATAA
TGATGATTTACAAAGCAATCCTTTGCTTATTGATCCACCAGAATCATTTT
GTCTGCCAACTAAAGAGGTCGACGCACCTGCAAAGACTACTAACATATTG
AGTACAAGTTGTACAATCAACAGTGAAACTTTAGCTGATAAAGATGTTTC
AGGCAAACTAACAACAGTGACTTCCAGCTCAATAGATTGTCCATGTGATA
ATAATCCAGATGGAAACACTCTAGCTGGCGATAAAGATTTGTCTTGTGTC
ATTCTAGAAAACAGTGCCAATGTGAAATCATTCAACATTAAACTTTTTAC
TGAAGTAGATAAGATCATAACAAAAGAGTGTGCCACTTCACCCGTGAAAA
TGAAACCTAGAAGGCGATTCATAGTTCAAGATGATGAGGATATACCAAGT
GCTTTATTGGAAATTCTAAATGGACCACAAGAAGTTAAAAATCCTTTAAG
TACACCTGGTCAAAATACACAAATAGCTACTGCTGATGAAAATGATATAT
CAATGAAGACTGATTCTAGTTCCAAAACTGGTCATCACACTTCAATACAA
ATCTTAGATAAAAACCAGACATTTGATTCGAGTGCTCCAAATTCAAAACA
AAGTACCTTCACTAAATTGTCCAAAAAGAGTGAAAGGGTCGCATCGGACA
GTGATGGCTCNTTCACTAAATTGTCCAAAAATAGTGAAAGGGTCGCATCG
GACAGTGATGGCTCCACATGTGACACCCAAGATCTTCCACGACCATCAAA
TGATTTCTGCGTTAATTTACTCAACTTTTATTGTACTGGACTTCTTGCAA
GGAGTGATACAGCTGAAGAAAACAGATCTAGTTTTTCTGAATATTCAGAT
GATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00001688-exon-sc0000011-1575043694:771936..773891 | TCONS_00001688-exon-sc0000011-1575043694:771936..773891 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1575043694:771633..771671 | TCONS_00001688-exon-sc0000011-1575043694:771633..771671 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1575043694:770637..771220 | TCONS_00001688-exon-sc0000011-1575043694:770637..771220 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1510915933:771936..773891 | TCONS_00001688-exon-sc0000011-1510915933:771936..773891 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1510915933:771633..771671 | TCONS_00001688-exon-sc0000011-1510915933:771633..771671 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1510915933:770637..771220 | TCONS_00001688-exon-sc0000011-1510915933:770637..771220 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1491911889:771936..773891 | TCONS_00001688-exon-sc0000011-1491911889:771936..773891 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1491911889:771633..771671 | TCONS_00001688-exon-sc0000011-1491911889:771633..771671 | Clytia hemisphaerica | exon |
| TCONS_00001688-exon-sc0000011-1491911889:770637..771220 | TCONS_00001688-exon-sc0000011-1491911889:770637..771220 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:770637..773891 - |
Blast
The following BLAST results are available for this feature:
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