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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=transcript|length=1115bp
aaaaaattttgatggacgttttgttttgattgtcatCTTTTCCTCTTTTG
ACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCTAATATGGCA
TCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTTAAATTCATG
AATCATGTAATTAAATAAAGGAGAAGCAAATCATGGCAACAATGTTTATG
GATACTTCAGAAGATCAATCTTTGAACGCAAAATCCGCTTTACGAAATGC
ACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGAAGATACTACCACTA
CTTCTTCAACTACAAGTTTTGATTTGACACGTACTTCTAGTATGAGCAGT
AATTTGAATTATGACGATACTTCAATCAAATTGATTGATGTTGAAACTCT
TGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGAAAAGATGGATGAAA
AGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTA
CGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCAT
AATGAATCTAGAAAAGatATGCAACAATCTAGAAAGTAGGATTGATATGT
TGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaatttaacaaGA
CTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAACTGCTGT
TATTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAAATGCACA
AATTTTATACGCACacacaaaaaagaaattttttaattgataCAACAACA
TTGTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATATtgtaaa
tactgtaaataaGATGATAcgttttagtttttgttttatatcatataaat
tattttattaagtATTACTTCTATGAACCTTGGGatggataaaaaatttt
taaagttgaaGTCTGTTCtagtattttttttacaattttttgtaCAGTTT
TTAGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGTGATAAAA
ATGAACCTTTTTGAGCCTAAATAATGAAgagatttttaataattttgtaG
AATTGAAAAGGGTTT Run BLAST on NCBI protein sequence of TCONS_00001599-protein >TCONS_00001599-protein ID=TCONS_00001599-protein|Name=TCONS_00001599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MATMFMDTSEDQSLNAKSALRNALRAKLKSSSSFEDTTTTSSTTSFDLTR
TSSMSSNLNYDDTSIKLIDVETLGNESDESGESDEKMDEKESSTAVSSIP
LEERRLRNRLAARKCREKRKQRIMNLEKICNNLESRIDMLTAEIEGLDGQ
KKNLTRLLENHNCVRLTPKPTAVIKNAVMSK Run BLAST on NCBI transcript from alignment at sc0000011:738543..740355+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=transcript|length=1813bp|location=Sequence derived from alignment at sc0000011:738543..740355+ (Clytia hemisphaerica)
aaaaaattttgatggacgttttgttttgattgtcatCTTTTCCTCTTTTG
ACAAAAACCATTTGTCAAGTGAGAAGTAAAGCTATTATCCTAATATGGCA
TCAATTAATTGCTATTGTCTCTATGCAGCTACAAAGTTTTTAAATTCATG
AATCATGTAATTAAATAAAGGTATGAGGTTATCATTGACGTTGCATTGTt
tgtaaaacattttaaaaggcATTGCTGTAATTCTCGATTGATCATTTGTT
GTCTTCTAATCGCTCGTCAAGGTGATTTGCACAAAAGGTTGAGCTGAAGT
AAAATTCCATGTGCAACAGCGTGAGTGGGACTTAGAGATTAGAAAATAAT
TGGATTAAGATTTAGCGTGATAACATACAGGACAATATTAGTATAAATTC
GGCTGTTTTGAGTTGAGACACATCTGACATCATTATCCACACCACCACAA
CCAGACACACAGCGTTTTGAGTAAACCCTTGAATCGTTTTCAGGAGAAGC
AAATCATGGCAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAAC
GCAAAATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTC
ATCTTTTGAAGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGA
CACGTACTTCTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATC
AAATTGATTGATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGA
ATCTGACGAAAAGATGGATGAAAAGGTAAAATTTTCAATCTACTAATCAA
ATTTTAATCGATCAATTTTTCCTAAAAGAAATCGATACAAATAATGATAA
CAACAAATTCTCAGAACTAATGATTCTTCTATCTTTACAGGAAAGTTCAA
CAGCAGTAAGTTCAATTCCATTGGAAGAGAGAAGATTACGAAATCGTTTA
GCTGCCAGAAAATGTAGAGAAAAAAGGAAGCAACGCATAATGAATCTAGA
AAAGGTAATAGAGCTTACATTTATTTATATTCGTATATggctttttgtta
atttttactTCGTGATTCTGTACTTACTGTCTTCTTAAATACCTACAAAA
CTATGAGTATTTAGGATACAATAATGTTTTCCTTTTGTCCTTGTTTCTGC
TATAAAGCAGACAACAAGACGACCTTTACTGGGccctttatttattttat
actttaaaaagtgtcttttctttctgactgaCTTTTAAACTtgatctctt
ttttttttattcagatATGCAACAATCTAGAAAGTAGGATTGATATGTTG
ACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaatttaacaaGACT
ACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGCCAACTGCTGTTA
TTAAGAATGCAGTCATGTCCAAGTGATTTAAGTCCAGTTAAATGCACAAA
TTTTATACGCACacacaaaaaagaaattttttaattgataCAACAACATT
GTTATTTATACAATAGCTTCATTATTTTCCACACCAAAATATtgtaaata
ctgtaaataaGATGATAcgttttagtttttgttttatatcatataaatta
ttttattaagtATTACTTCTATGAACCTTGGGatggataaaaaattttta
aagttgaaGTCTGTTCtagtattttttttacaattttttgtaCAGTTTTT
AGATGAATTTTAGTTCTGGTAGCTAAAATTACATTGACTGTGATAAAAAT
GAACCTTTTTGAGCCTAAATAATGAAgagatttttaataattttgtaGAA
TTGAAAAGGGTTT Coding sequence (CDS) from alignment at sc0000011:738543..740355+ >TCONS_00001599 ID=TCONS_00001599|Name=TCONS_00001599|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000011:738543..740355+ (Clytia hemisphaerica)
ATGGCAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAA
ATCCGCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTT
TTGAAGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGT
ACTTCTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATT
GATTGATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTG
ACGAAAAGATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCA
TTGGAAGAGAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGA
AAAAAGGAAGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAG
AAAGTAGGATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaa
aaaaagaatttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCAC
TCCAAAGCCAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGAATGG
CAACAATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAAATCC
GCTTTACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGA
AGATACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGTACTT
CTAGTATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATTGATT
GATGTTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGA
AAAGATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGG
AAGAGAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAA
AGGAAGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAGAAAG
TAGGATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaa
agaatttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCA
AAGCCAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGAATGGCAAC
AATGTTTATGGATACTTCAGAAGATCAATCTTTGAACGCAAAATCCGCTT
TACGAAATGCACTTCGAGCAAAATTGAAATCAAGTTCATCTTTTGAAGAT
ACTACCACTACTTCTTCAACTACAAGTTTTGATTTGACACGTACTTCTAG
TATGAGCAGTAATTTGAATTATGACGATACTTCAATCAAATTGATTGATG
TTGAAACTCTTGGAAATGAAAGTGATGAAAGTGGTGAATCTGACGAAAAG
ATGGATGAAAAGGAAAGTTCAACAGCAGTAAGTTCAATTCCATTGGAAGA
GAGAAGATTACGAAATCGTTTAGCTGCCAGAAAATGTAGAGAAAAAAGGA
AGCAACGCATAATGAATCTAGAAAAGatATGCAACAATCTAGAAAGTAGG
ATTGATATGTTGACAGCCGAAATTGAAGGATTAGATGggcaaaaaaagaa
tttaacaaGACTACTGGAAAATCATAATTGCGTCCGACTCACTCCAAAGC
CAACTGCTGTTATTAAGAATGCAGTCATGTCCAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001599-exon-sc0000011-1491911889:738543..738712 | TCONS_00001599-exon-sc0000011-1491911889:738543..738712 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1510915933:738543..738712 | TCONS_00001599-exon-sc0000011-1510915933:738543..738712 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1575043694:738543..738712 | TCONS_00001599-exon-sc0000011-1575043694:738543..738712 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1491911889:739036..739317 | TCONS_00001599-exon-sc0000011-1491911889:739036..739317 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1510915933:739036..739317 | TCONS_00001599-exon-sc0000011-1510915933:739036..739317 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1575043694:739036..739317 | TCONS_00001599-exon-sc0000011-1575043694:739036..739317 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1491911889:739433..739546 | TCONS_00001599-exon-sc0000011-1491911889:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1510915933:739433..739546 | TCONS_00001599-exon-sc0000011-1510915933:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1575043694:739433..739546 | TCONS_00001599-exon-sc0000011-1575043694:739433..739546 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1491911889:739807..740355 | TCONS_00001599-exon-sc0000011-1491911889:739807..740355 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1510915933:739807..740355 | TCONS_00001599-exon-sc0000011-1510915933:739807..740355 | Clytia hemisphaerica | exon |
| TCONS_00001599-exon-sc0000011-1575043694:739807..740355 | TCONS_00001599-exon-sc0000011-1575043694:739807..740355 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:738543..740355 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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