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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001362 ID=TCONS_00001362|Name=TCONS_00001362|organism=Clytia hemisphaerica|type=transcript|length=653bp
CTACCGCGCCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGAAAA
GGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAATAATTAAAGTGCT
ATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCACCGG
AACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGCAA
ATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACAACAA
CACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTCAATG
ATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTTGTAGAAGACAAA
GAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTCGT
TAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaattcttagaaGGAT
GAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGCTTTcaagtaaat
aaatattttgttagCGTTTTTTTTTCACAGTAAACAGTAAACCATGTTAC
ATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTTGTATTTAATAAA
TTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATAATTTCacaatta
aaa Run BLAST on NCBI transcript from alignment at sc0000010:598342..604106+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001362 ID=TCONS_00001362|Name=TCONS_00001362|organism=Clytia hemisphaerica|type=transcript|length=5765bp|location=Sequence derived from alignment at sc0000010:598342..604106+ (Clytia hemisphaerica)
CTACCGCGCCTGGTATTCCCTATGTTCTAGAGATCTGGCCTTCAGGTAAG
GAGATGGTTCAGTGCAGCTCGCTTTGGCAAGTTAACCGTAGTGGTAGTAA
CATGTTTTCAATATTTAAGAGGGAGATCATGAATCGCATTACTCGTTGAT
GTGTCTTGATGTATACCGGATGGTCCAAAGAAAGTTTccataaattcaaa
atttatgattttcatCACAAAGTGTTAGAACAACTATCCACCGCACAAAC
AGATAGGGTTGATTCTACCAGCGTCGATGAAtatcaatttctgaaaattt
tccgATAGAGTGACTTCAGACATCGGTGGTCTCTCGCCCCTGGGAAACTA
TAACTATACTATAAAAGTAACTTAATTCNACTTTTTCAGATTATACGCTC
AtatgttttcttcttttatattaCTAACTGCGAAATAAATTAGCATGGTC
AGGGGATTGTCCAGGGTTGATGAATCTATATTTGCTTTCTTTCTCAGGAA
AAGGAAGCCCTATCCATAATCATGGAGGAGCATGCGCTATCATTAAAGTG
CTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCACACAGCCACC
AGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTCAATGAAGAGC
AAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCGCTTACACAAT
AACACTGATGATTTCTGCGCAACCATACAATGCTATCGATATGACTTCAA
TGATGCAATTCGCTGCCCAAATTTCCATTATGTGGGTTTTGTAGAAGGCA
AAGAAAAATATGAGTTGGAAGAATTCTATCCAGATAGCGATTTCACGTTC
GTTAATTTGAGACGAACTGTTCTTGACGAGTATCAAAAATTCTTGGAAGG
CTGAGTagtgattttgattttattttttttctgtaaaagtgttgttttta
atcaaattttatttaGCCCTCTTAGCCGAGGGTAATCTAAAAGATATTTT
AGAGCTTCTACagtttaaccctatttttatcagtgGGGGTGTTTTCCATC
AGCCTGGCATTTATTTGCTAATAGCTTTGTATTTGTCTGATACTTTCGTA
CACAAGTCGTTTCTTTTGTCAGTAATGAGTTGTGGTAGCGAACCCCAAAT
GAACTTTCTGGTGCGAACCCTGAAACAAGATTTTGACAAGATAGTCTACC
TGCAGGCTTTTATTGGCACGGCCAGTAAAAGAGTCGCGGTATTTCAGCAC
GGTAAAATAAAAAGACGCAATTGTTAAAGAGTTAACGACTTAAAAGTATC
AAAGAGTTGGACAATAAAAGGCTAtttcatatttaaaaaaaaatcaaatt
tgtttaaTACCGATTTAGTTGTATGAAAAGAGATTCTCGAAAAACATTAT
CAGTGATTCGACAAAACATACTTTCACCGAAGTTTCTTTTAAGATAATCC
TATAGAGTCTGTGTAAAACATGATAAGGCAAGTGGGTAAAACGATATGAA
CCTTTTGTCGGGAGATGATGATTCGTATGACAATCTCGTAATTAGGAACT
TATAGTATTTTTATAGACTTAAAAAAGCTTTGTTAGTTCTATGTTGTTTT
AATGATCTTTGATGTTTAGTAAattcaaacaaacaaacgaAAATACTAGT
AAGGAAATAATTCTCGTTCCAACACaatcttacacgtttttttataagaa
caaactatataagaacataaggcttcgatgaccaaaatgttaagaataag
ttaagaacattttaaggcttcgcggactcaaAAACAGCCAATtacttagg
aaaatggacaaaaatacataaaaattgggggaaaataagaacatgttaag
gacattttgaaactcaaaaagttaagaacatctgaaggcttcaaaaaatt
tggatgttcttataaaaaaacgtgtatctgtttgaaagaaaattagttta
CTGGTAATAGACAAGCTCCTCTTCTTTCCTAGAAAGGTGTTTTACATTCT
GcgaaaaaaaaaacctaaaaGTTTTTGCTGACTCAAACAGTGATTTGAAT
CTGTGACTATCTTGTGACTATCAGCCTCTTTCCAATCCTTTATATAAAGC
CGCCATAATGTGTACgaatcttcaaaactactttactTGTAAACCGCGAG
GGAGACAATTTAAAACGTGCATCATTCAACGAAAACGGCAACTAAGTTTT
CAAGAGAAACTGTTGTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTAT
GCCTCGAAGAAGGACTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAG
TCTATACCGTTCGTAAGAAGAGTCAATTCACCATCTACATAACACCTGAC
AAACAAAAGGTACCAAAAAGCTTAGATTTCGATAGTGAATTCTCAGAGTT
TGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTGACTGTTG
GTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAG
AGAGTGTTGAAAGAAGAATATGGGAAGAATATTGGAATTGAACCCAAAGA
ACTGGTAAGCTGTACTAATCACATCGTCTTATCTTTCGTCTAGACTTTCT
CAGTCTGGTTACGTTACGTAGTTGTACTTCTATTGTTTTTACAGCTATAT
ATCCTGTCCTATACGTAGCGTTCTTAAAGCTCGTGATTTTTCTTTAACGT
TGGAATTTGTTTTTGGTTTTAGGTCAGTTATTGGTTCAGTTATGACCGCG
ATGCACTGACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACAACA
CTATTAGAGTTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCA
CATTCGAAAGAAGTACAATATTTTCTTCAATGCAGGTTAGACTTTGAAGT
CGCTAATATTCTCAATcgacttttgttttttttccctTGGTTATCAACTT
CAACTAAGTTTGGGTATaaatctgtctgtctgtctgtctgtctgtctgtc
tgtctgtctgtctgtctgtctgtctgtctgtctgtcttaCAATATTGTCA
CCGGATTTGTCGTTTTATTGGATTTCTCTCATATAATGTGTATGTCGGAT
GGAAATGGTTATTTAGGTGTGTGACATTGGGTTGATGGATGTTTACTAAT
TGGCAGTTTTTACACTAGGCTTGGATAGTGTTagttttttcttttggaaa
ggtgGGTTTTGGCTTTTATCAACAGTTCTGTATTGTTTTCTTCGTGTCTC
TCTGTCTGTCTGTCCGTCCGAAGATTTATGGGTTGACCAATTTTCTTACC
ATTTGAGGCTAGGTTCGAATTattaattttatatttatttttctagaAGA
GAAAAAATACGTGGTTGCCGAATCGGAGAAAATGGTGGAGGACGTGACAG
GAGGACTGGTCAAAATCGAACAGACGTTACAATTCTATCCCAACCCTCTC
GTGACTAATTTCTCACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGTT
CGATCTTGATCGAGATCAATTCATGTTTTCAAGTAGCCTACCACCTGCCT
GTAAAGAACTCTACGATAATATCAAAGGTACGTCTAGTTAATTTCATAAC
AGATCATCTATTCTGCTCCTAAAGGGATTTGGCAAATGTGCCGATCTAAC
TTGGTTGTCTGTCAAAACAATTAAAACTACGTTGCTTTTTGGTTTTAATG
ATTATAAGATTGACATATGATTTTGGTGTGATTGCTTTGCTTTAGCCAAT
AACTGCGCACAAAATCTCATTCCGCAAACATGAGCAAATTATTTTATGGA
ACCATGCCCTTTAGAGTGAATACTTGCCATGCCATGCGTTGAGTAGTAGA
ATCTGCTCAGAGACTAATGTCTAGTTGACCTCTAATTTCTAACGTATTTT
GATGGTCTAAAATAGACGTTACTGCTTAGAAAAATAGCCTTGACGTTTTA
AATATAGGCAAGTTATTCATCAGTAGTCATTATCATCTGCNGTTGATCTC
taatttctaatatttttttggtTCATGGTCTAGAATAGACGTTACTACTT
AAAAAATCATTATCGTCTACAGGTCTTCAACTGGAGTTTCCAGAAGATCC
TATTACGAAACTTTCAGACGCCATACGGTACAGCATCAACACACCTGGAA
TGACTTTAtatgaaaagttgaaagaaaaggaagaacAGTTTGCTTACCTA
CGTGTAACACTTGGGCCTGACCGCCGTACCGCACCTGGTATTCCCTATGT
TCTAGAGATCTGGCCTTCAGGTAAGGAGATTTGATTATGTCCGGCATTGA
CTAGTTTACTGTagtattaccttaagggaattaattttcgcgggacttat
tttcACGACTAACTTCGACTgtaaattttcgcgaggatttaatttcgcga
attgacgaattttttcagattttcagatttttccttAGTTTGATTACGAG
ATTTTGTGTGTTTAGTAGAGTCTTATATCTTCATAactgaataaaaattt
attcgaattacagagacatTCGAGAGTCATTTAAGAGAGTTTCCATTAGA
TCAAAAAACTTAGAATTTTTAgcgtaaaaaaattaattttcgagaggatc
aaattttgcgaatttagCGAGAGAtgagagtttgaaaattttcgcgagag
attatatttcgcgaaaaagttgaaattcgcgaaaattcgcgaaatataat
ccccgcgaaaatttattcccttaaggtaccatgtttgtaatttttgatag
aAAGATCGGGGACCGCCATAGAGCTTGGTGTATGTGGTTTATACTATGAT
TTTCATTACATGGTATAATTATTTTGATGTATCCCTCTAACAACCCTAAC
TCCACAATGGGATTTGGTTTAGGCCTACCAGGGTCCAATGTCTGTCTTTG
TGAGCACGTTAAATGTACTATGTACCAGTGTATCTCTCGCAGTACCTCTA
cggcaataaattttgaaattagccgtagatatcgggtctgtaTTTAGACT
AATGTTAACGCAATTACACCAGACATTACAAGTCAATTCTGCCATGCACT
TTTTCAAATTATACGCTCAtatgttttcttcttttatattaCTAATTGCG
AAATTAGCATGATCAGGGAATTGTCCAGGGTTGATGAATCTATATTTTCT
TTCTCAGGAAAAGGAAGCCCTATCCATAATCATGGAGGAGCATGTGCAAT
AATTAAAGTGCTATTTGGTAGAATCACTTGCAACATCTACAACAAGATCA
CACAGCCACCGGAACAAACAGAAATGCAACCTTTGACCAGATTTGATCTC
AATGAAGAGCAAATGACCTGGATAGGCCCCAACTGGTATCAAACGCATCG
CTTACACAACAACACTGATGATTTCTGCGCAACCATACAATGCTATCGAT
ATGACTTCAATGATGCAATTCACTGGCCCAATTTCGATTATGTGGGTTTT
GTAGAAGACAAAGAAAAATACGAGTTGGAAGAATTCTATCCAGATAGCGA
TTTCACGTTCGTTAATTTGAGACGAACTGTTCTTGACGAGtttcaaaaat
tcttagaaGGATGAGTTATGATTTTAACTTTCCTGCAAAGATTGCAGTGC
TTTcaagtaaataaatattttgttagCGTTTTTTTTTCACAGTAAACAGT
AAACCATGTTACATTTTAAAACGTTATACTGTTGAACCCCCATGTAATTT
GTATTTAATAAATTGAAAGACCTATGTGTGAATCGAAAAAAAACTTGATA
ATTTCacaattaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001362-exon-sc0000010-1491911889:598342..598386 | TCONS_00001362-exon-sc0000010-1491911889:598342..598386 | Clytia hemisphaerica | exon |
| TCONS_00001362-exon-sc0000010-1510915933:598342..598386 | TCONS_00001362-exon-sc0000010-1510915933:598342..598386 | Clytia hemisphaerica | exon |
| TCONS_00001362-exon-sc0000010-1575043694:598342..598386 | TCONS_00001362-exon-sc0000010-1575043694:598342..598386 | Clytia hemisphaerica | exon |
| TCONS_00001362-exon-sc0000010-1491911889:603499..604106 | TCONS_00001362-exon-sc0000010-1491911889:603499..604106 | Clytia hemisphaerica | exon |
| TCONS_00001362-exon-sc0000010-1510915933:603499..604106 | TCONS_00001362-exon-sc0000010-1510915933:603499..604106 | Clytia hemisphaerica | exon |
| TCONS_00001362-exon-sc0000010-1575043694:603499..604106 | TCONS_00001362-exon-sc0000010-1575043694:603499..604106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:598342..604106 + |
Blast
The following BLAST results are available for this feature:
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