TCONS_00013274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013274
Unique NameTCONS_00013274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013274 ID=TCONS_00013274|Name=TCONS_00013274|organism=Clytia hemisphaerica|type=transcript|length=1320bp
AGGTAGACAGGCAACCACCGATAGTTTGGTGCGTAAAACAACTACTACAA
CTAGATCATCCGATCAAACGACATCCGGCGATATAGGGACGACCAACCGA
ACGACATCTGGCGATATGATGACGAATCGCACAACAGAGGGAACATTAGG
CAACACAACAGACGAAATGGGCGGAAGTGGCAACACAACAGACGAAACGG
GCGGAAGTGGCAACACAACAGACGCCACGGGCGGAAGTGGCAACACAACA
GACGCCACGGGCGGAAGTGGCAACACAACAGACGACATGGGCGGAAATGG
CGGCACAACAGACGCCACGGGCGGAAGTGGCAACACAACAGACGCCACGG
GCGGAAGTGGCAACACAACAGACGACATGGGCGGAAATGGCGGCACAACA
GACGCCACGGGCGGAAGTGGCAACACAACAGACGCCACGGGCGGAAGTGG
CAACACAACAGACGACATGGGCGGAAATGGCGGTACAACAGACGACACGG
GTGGAATTGGCGACATAACGCCAATCGATGATCGAACAGAAAACGAAATA
CTAGCCGATAGGTTTTGTGAATTCAGAGATGAAGGTCTTTTCGCTTACAC
TGTAAATTGTCAAGCGTACGTCGAATGTGTGGGAGAAGAGACTAGACGCA
GAGCTATCTTCAAAGCATGTGACAGAGGACAACACTTTCATCCAGATATA
TTGAATTGTGTTCCAGCCAATCAATTCACTTGTTTCAACGCTTTACAAAA
GAACCCGCCTGAAGATCCCTACCTACCACCAGGCGTGAGTCCATTTCCAA
GACCTGAGGTGTGTAATGCTACTTTCAATGATGGCAATATCGCAGATCCT
GAGTCGTGCTCAAGGTATTACACTTGTACGAGTGGACTTACAATCGGCCC
CAGACCGTGCTCTACGTCTTTATACTTCAACCCAAGGATAGGTAATTGTG
ATTGGCCGAAAAACGGTAACACTGAAAATTGTCGTGGAGCGACTATAAGA
ACGACGACCACTACAACTCGGCGAACGACTATGAAAGATGATTCAACGAC
GATGAAACTAAATACGACTACTACAACTCGGCGAACGACAACTACAACTC
GGCGAACGACACTACAAACTCGGGAAACAACAACTTCAACGAAGGCAAAA
ACTGTACCGACAGATATAATTTTCGCATAAACTTAAGGAACACCGAGAAC
AGATTGAAAACTTGACTTTCGGCCAagttaatttgaaaaaagatcaGAAA
ATTGTTTTTAGACAGATAGATAATTTATCAATGTAATTTACccttaactt
ttttaaataatcattttttc
Run BLAST on NCBI

transcript from alignment at sc0000164:61777..66348+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013274 ID=TCONS_00013274|Name=TCONS_00013274|organism=Clytia hemisphaerica|type=transcript|length=4572bp|location=Sequence derived from alignment at sc0000164:61777..66348+ (Clytia hemisphaerica)
AGGTAGACAGGCAACCACCGATAGTTTGGTGCGTAAAACAACTACTACAA
CTAGATCATCCGATCAAACGACATCCGGCGATATAGGGACGACCAACCGA
ACGACATCTGGCGATATGATGACGAATCGCACAACAGAGGGAACATTAGG
TTAGTATATGCATTTGCTTCATATGTCTGCTTTGGGAATACTGCTTTTGT
ATGTAATAGAAAAGGTTTTATtgtgattattttcaatggttTTACAAAAT
CAGCCATACAACTGCTATATGTGTGAAGAAATTCATGAACAATTTCTGtg
caactatcttctttcaggagattgggtggcagagcagtaTATGCATTTCG
CCCTGTACCCTGGCTAGGGAGATCTAATTGCCTAGCATCTCATGCCATAA
AACTAATTGTGACGCAAACTGAAAGATGTTATAGATCGGCTTTAAGACTT
AGCCACTAACAGAATGGACTAGAGAACTACTCTACTTTTAAAGTCTCTTG
TTAAGTATACACATGACCGTACAAACCCTCACGCTGAGAATTCTTCAACT
GTCCTTCCTTTCTCAGGCAACACAACAGACGAAATGGGCGGAAGTGGCAA
CACAACAGACGAAACGGGCGGAAGTGGCAACACAACAGACGCCACGGGCG
GAAGTGGCAACACAACAGACGCCACGGGCGGAAGTGGCAACACAACAGAC
GACATGGGCGGAAATGGCGGCACAACAGACGCCACGGGCGGAAGTGGCAA
CACAACAGACGCCACGGGCGGAAGTGGCAACACAACAGACGACATGGGCG
GAAATGGCGGCACAACAGACGCCACGGGCGGAAGTGGCAACACAACAGAC
GCCACGGGCGGAAGTGGCAACACAACAGACGACATGGGCGGAAATGGCGG
TACAACAGACGACACGGGTGGAATTGGCGACATAACGCCAATCGATGATC
GAACAGAAAACGAAATACTAGCCGATAGGTTTTGTGAATTCAGAGATGAA
GGTCTTTTCGCTTACACTGTAAATTGTCAAGCGTACGTCGAATGTGTGGG
AGAAGAGACTAGACGCAGAGCTATCTTCAAAGCATGTGACAGAGGACAAC
ACTTTCATCCAGATATATTGAATTGTGTTCCAGCCAATCAATTCACTTGT
TTCAACGCTTTACAAAAGAACCCGCCTGAAGGTAAACGTCCATAGAATTA
AAGgcctacatacactacacaatatattgttgtcaggcaatatattgata
atatattgctgagtgccggcaatatattgaaaagtcaatatattgtcagc
tcgatttgcaatattccaacaatatagggggattgtttacagaaagaaac
tTTCTTTTCATAATAGAGTACCTGttatttacttcgtacattacggtccg
aaaacgatattgtcaaatattgttcgtcaatattttgtgtagtctaagta
gcccttaaatTACAGTAGGATTTCCattgaataagggagcgtatcgaaaa
gTAGAGTGtcttttatgagagtttcttattgacggtgactttcaatatta
tcgaataatggagcgcatcgaatagtagaacgtcgaattagagagcgtcg
actGTAACTGTCAACTCTGGTAAATGTACCATTAAAATGAATCCATTTGC
ACCAAGTTCAAAGCAAGTTCGCAACGTAGAATAATTGATTTAATCATCTT
GAAAAAACCGTTGTAGAGACAAAGTTATATAGTTTCCAATTAACAGTGGT
CAAAGTAGAGATTCTCCTGACAGACAGGGGTTTAATAACACTCCAACATT
GGCCAGATTCTTCAAATTTGGCTGGTTTTTACATAACTTGAGACGAAATT
CGCTTTTTTAAACTTCTGTGAGACGGAACTTTTTGAACACTGAATTAAAC
CTTCATTGTAGggcatattcatgatatgcaacactggagagtcttctgag
attttttaaaaagttcaacccaatacgtcacttaaaaaatagaaaaagtg
atGTATTGTGtggaactttttaaaaattttttgaagactctccagtgttg
cataatatcatgaattagcCAGATGTACAGTAACTGATGAATCACTTTTT
TCGTTTAGATCCCTACCTACCACCAGGCGTGAGTCCATTTCCAAGACCTG
AGGTGTGTAATGCTACTTTCAATGATGGCAATATCGCAGATCCTGAGTCG
TGCTCAAGGTAAGGTTTGTTCTcatgtactctcgggtacctaatagccgN
NNNNNNatatattgctgagtgccggcaatatattgaaaagtcaatatatt
gtcagctcgatttgcaatattccaacaatatagggggattgtttacagaa
agaaactTTCTTTTCATAATAGAGTACCTGttatttacttcgtacattac
ggtccgaaaacgaTATTGTCATATATTGtttgtcaatatattgtgtagtg
taagTAGCCCTTAAGATACAGTTGGATTTCCattgaataagggagcgtat
cgaatagtagagtgtctttatgagagtttcttgttgacggtgactttcaa
tattatcgaataatggagcgcatcgaatagtagaacgtcgaattagagag
cgtcgactGTAACTGTCAACTCTGGTAAATGTACCATTAAAATGAATCCA
ATGGCACCAAGTTCAAAGCAAGTTCGCAACGTAGAATAATTGATTTAATC
ATCTTGAAAAAACCGTTGTAGAGACAAAGTTATATAGTTTTCGATTAACA
GTGGTCAAAGCAGAGATTCTCCTGTCAGACAGGGGTTTAATAACACTCCA
ACCTCAGCCAGATTCTTCAAATTTGGCTGGTTTTTACATAACTTGAGACG
AAATTCGCTTTTTTAAACTTCTGTGAGACGGAACTTTTTGAACACTGAAT
TAAACCTTCATTGTAGggcatattcatgatatgcaacactggagagtctt
ctgagattttttaaaaagttcaacccaatacgtcacttaaaaaatagaaa
aagtgatGTATTGTGtggaactttttaaaaattttttgaagactctccag
tgttgcataatatcatgaattagcCAGATGTACAGTAACTGATGAATCAC
TTTTTTCGTTTAGATCCCTACCTACCACCAGGCGTGAGTCCATTTCCAAG
ACCTGAGGTGTGTAATGCTACTTTCAATGATGGCAATATCGCAGATCCTG
AGTCGTGCTCAAGGTAAGGTTTGTTCTcatgtactctcgggtacctaata
gccgggggggggggggcgctaattaaattttccacccaggacattcttat
tccagccCACTCcttcttattgatttttgggaaatttattTCGAAAGTTC
CCTcctttgccctaattctgctgtattagcctccttttcgaaaattttcc
atccagggcatttttattccaatcttcccgcttattaatttttgagattt
tttccaacccccctgcttattccaaatctcccggctattaggtacccgag
agtataggGAGCACTCTTTAATGTCACACTCAAATATACATTCCAGAAAA
AACCGTACACcactgttgaggaggtccatttccattttcgtttccaaggg
ggtaaggtgtgatatgtggcggaattccatagggagatacgaaaatctgt
caaaaataactggaattccatagggGTAGCTTTtaaaatcctactaaaat
tcagaattccagagggttttgagcctgaaattgtctggaattccagaggg
ttacagcatttccagccacagagggatggacctcctTAACAAGGGGTAta
cagtttttttctggaaaagtccaataTACATTCCAGAGGACAAACCTTGG
TAAAATAATCGTCACTGGTGAATTAAAATATCCCTGTTAGCTTCGTCATC
CTATTTGCGGTTAGTCTTTGCCAAACTCTtcttcttcgccgaaaatataA
CGCGAAATTCCAAACTATAAATACTGTATTGCTGATGGGGAATAACGGAA
GTTTAAATAAAACTGGCAAGAATTAGGCTTCTGGTATTCTCCCCTCCTTA
TACTATCTGCAGTTCTGTGAGAAAATTATTAAGACTAGAATTAACTCTCC
TTGATTTTCCTTAAAGGTATTACACTTGTACGAGTGGACTTACAATCGGC
CCCAGACCGTGCTCTACGTCTTTATACTTCAACCCAAGGATAGGTAATTG
TGATTGGCCGAAAAACGGTAACACTGAAAATTGTCGTGGAGCGACTATAA
GAACGACGACCACTACAACTCGGCGAACGACTATGAAAGATGATTCAACG
ACGATGAAACTAAATACGACTACTACAACTCGGCGAACGACAACTACAAC
TCGGCGAACGACACTACAAACTCGGGAAACAACAACTTCAACGAAGGCAA
AAACTGTACCGACAGATATAATTTTCGCATAAACTTAAGGAACACCGAGA
ACAGATTGAAAACTTGACTTTCGGCCAagttaatttgaaaaaagatcaGA
AAATTGTTTTTAGACAGATAGATAATTTATCAATGTAATTTACccttaac
ttttttaaataatcattttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007414XLOC_007414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013274-exon-sc0000164-1491911889:61777..61925TCONS_00013274-exon-sc0000164-1491911889:61777..61925Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1510915933:61777..61925TCONS_00013274-exon-sc0000164-1510915933:61777..61925Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1575043694:61777..61925TCONS_00013274-exon-sc0000164-1575043694:61777..61925Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1491911889:62343..62957TCONS_00013274-exon-sc0000164-1491911889:62343..62957Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1510915933:62343..62957TCONS_00013274-exon-sc0000164-1510915933:62343..62957Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1575043694:62343..62957TCONS_00013274-exon-sc0000164-1575043694:62343..62957Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1491911889:64890..64989TCONS_00013274-exon-sc0000164-1491911889:64890..64989Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1510915933:64890..64989TCONS_00013274-exon-sc0000164-1510915933:64890..64989Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1575043694:64890..64989TCONS_00013274-exon-sc0000164-1575043694:64890..64989Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1491911889:65893..66348TCONS_00013274-exon-sc0000164-1491911889:65893..66348Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1510915933:65893..66348TCONS_00013274-exon-sc0000164-1510915933:65893..66348Clytia hemisphaericaexon
TCONS_00013274-exon-sc0000164-1575043694:65893..66348TCONS_00013274-exon-sc0000164-1575043694:65893..66348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:61777..66348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0106444	0	0	0.0117911	2.12447	1.20237	0.246331	0.512471	0.161457	0.844403	0.700972	0.113426	0.382279	0.86752	10.4565	3.48968	0.439489	0.237516	0.0339457	0.473622	0.0411664	0.0150596	0	0.0221916	0.0228568	0.0407983	0.0291911	0	0.0118144	0.012037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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