TCONS_00012512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012512
Unique NameTCONS_00012512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012512 ID=TCONS_00012512|Name=TCONS_00012512|organism=Clytia hemisphaerica|type=transcript|length=1446bp
TGTGTAGAACAAGAAGTATATGATTAGGAAATACAATAGCACTGTCAAAA
TCACTTTAGCACTGTTGAATGAAAGTACTTGCTCTTAAAATAGTATAAAT
TGTCAGCTCACAAAATAATATGGACTGTCGTCTTACTTACCTGAGTTTTA
CTGAATAACTTTAAATGTTCTTGAAATAATGCCTTTGGAAAGAATTCATT
GTCATGATCTAGCAGTGTCTTCACAGAGTCTAAAGCTGTGACCGGTCTCC
CCTCTGTTAAATTCAGATGAAGTCcaagttttagttttttgacTGCTGTC
TTCAAACAACATTTCAAAGGAATGGGATCAACGAATGCTGCATTAACTAA
AACGGAAACACTGTTAACAATTCCATTATTCAAAGCTTCTAAGATTCCTT
CGTTTCGTTGGGGACAATAACCGTAATCATCAGCAGTAACCTTGATGGTA
ATAAGTGTTCCAAGTTGGAATTGTTTtggttcaaaattttcttccactGC
TAGCGCCatctttgttattgtttttttggCGCGAGAATTATGTATTGCTC
CACAATTTAGTAGAGCCTGTGGTCTAGATGTAAACAATCCCGCGTCCAgc
ctttttgttttgatctcgATTTATCTGGTGACTTTTTAGCAAGAAGTCTC
GAtcattcaaattctttttaaacTTCCAAGATGTCGAAGAGAGCTGGAGG
AAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTG
TCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTTCGTTATTGCT
GTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCCGCTGCCTCAGG
AGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAACTTCGAAAGA
AAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAG
AATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCATTGTTAACAA
CAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTTGCAAAGGAAT
GTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaa
ttggaaaaaaatctttaaaagaataTTCATTTGTTTCCAGTATTTACTTC
CCTGTTGAGATCATTGTATAATTAAAGGTCATTGAAACTTGATTATTTGA
CTATTTTAGTGTTTTGGCCGTATTTAactatggaggtataaagaaacagg
agatgtATGCTGTTGTAACCAGGCTTGCCCTTCGATTGAAAAAGTTatga
tgtatgcatgctcataaacTTATAtgtcgtgcatttttaatgagcttttt
tatccataggtgaaatcttattggctcattgaaGCTTTGAAAATTAGTTG
Agtcgagattcattgtttctgacgtcagtataagaaaatatttgga
Run BLAST on NCBI

protein sequence of TCONS_00012512-protein

>TCONS_00012512-protein ID=TCONS_00012512-protein|Name=TCONS_00012512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSKRAGGRVGGKFRMALGLPVGAVMNCADNTGAKNLFVIAVNGTQARLNR
LPAAASGDLFVASVKKGKPELRKKVMPGVVIRQRKAFRRKNGVFIYFEDN
AGVIVNNKGEMKGSAINGPVAKECAELWPRIASNAGSIH
Run BLAST on NCBI

transcript from alignment at sc0000145:312578..318913+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012512 ID=TCONS_00012512|Name=TCONS_00012512|organism=Clytia hemisphaerica|type=transcript|length=6336bp|location=Sequence derived from alignment at sc0000145:312578..318913+ (Clytia hemisphaerica)
TGTGTAGAACAAGAAGTATATGATTAGGAAATACAATAGCACTGTCAAAA
TCACTTTAGCACTGTTGAATGAAAGTACTTGCTCTTAAAATAGTATAAAT
TGTCAGCTCACAAAATAATATGGACTGTCGTCTTACTTACCTGAGTTTTA
CTGAATAACTTTAAATGTTCTTGAAATAATGCCTTTGGAAAGAATTCATT
GTCATGATCTAGCAGTGTCTTCACAGAGTCTAAAGCTGTGACCGGTCTCC
CCTCTGTTAAATTCAGATGAAGTCcaagttttagttttttgacTGCTGTC
TTCAAACAACATTTCAAAGGAATGGGATCAACGAATGCTGCATTAACTAA
AACGGAAACACTGTTAACAATTCCATTATTCAAAGCTTCTAAGATTCCTT
CGTTTCGTTGGGGACAATAACCGTAATCATCAGCAGTAACCTTGATGGTA
ATAAGTGTTCCAAGTTGGAATTGTTTtggttcaaaattttcttccactGC
TAGCGCCatctttgttattgtttttttggCGCGAGAATTATGTATTGCTC
CACAATTTAGTAGAGCCTGTGGTCTAGATGTAAACAATCCCGCGTCCAgc
ctttttgttttgatctcgATTTATCTGGTGACTTTTTAGCAAGAAGTCTC
GAtcattcaaattctttttaaacTTCCAAGATGTCGAAGAGAGGTGAGAT
GAATATACCTTTTTTGCCACTACAAAATCATACCCTATCTATTTGATCGA
TGGAtgtattttcatgaaatttacaAAGAGTTACAAATGCATTTCTCCTG
TTAAAGATGAAGTGTTTAATTCGTGAATATGTACGTTCTTCATTCAGACA
ACTTACTTTAATCAAGGCTCTACCTTATAATGCTTCAAATTGTAATCAAC
GAAATGTTTTTGTCACATAGCTGGAGGAAGAGTCGGAGGAAAATTCCGCA
TGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGACAACACT
GGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAGCTAGATT
GAACAGATTGCCTGCCGCTGCCTCAGGAGATCTTTTTGTTGCTTCAGTCA
AGAAGGGTAAACCAGAACTTCGAAAGAAAGGTAATatcatctatatatta
atagccgtagtctgtatgtgtgtttgtttgttttttgtgtgtcactttcg
ttttctcaagcaatgttttgttcttttaaaagatgacttttgcctcttgc
tccacaaatgtgttaaatcagattcgcgccgttttataatagatagatta
gactttttctttttttttctttcttttcttttgttttatgttttctaatg
taattaacgaccttatttgatttgagacgttcgaattcttttcaaaacaa
aagaaaatcttttaaacaggatcttttaaagaaaataacaaatataaaat
aaaacataagaatcacaagacaagtttgttagagcaacagcaacattaaa
aatacattcaaaaggcggtaaaaactagaattctttcttcgtaaaaaggg
acctttaaacatgtaagtcgataattattttgctgtaaagttaagtcatt
gttgaatttgaaaaattattgaagttatgaccaagttattttataaaaag
caacattaaaattgcgctatcacgcttttttgtctgcgtgtcctagctgc
attccggggggactatggttgcgagctgactttcggccctatccctcgga
cccttagcagaataaagaggagaagaaacaagggaaattgtgtgaatttt
aattcactttttggaactaatttgacctaatttctatctttctgtgggca
aaaacttgaaattttcctatttttccgattcttagtggtactgaagtttg
attttgcgatttttcaaactgccatgtttcaaaaaaggcaccctttaGGG
CGGctcatacccatacccttctcttgcctaagtaccccccggcTGCCTTT
TTTCAacgaatcgcgtgtcatgtctattattccACTcctcttatcttgac
atcaaagttttcctaaacatcaagaactatgGTAAATATACgtgagcgaa
gcgagaaaaaaaatctaattgcagagccgactcggacgtcgctggtcgcc
ggtatggtgtaatttgggaatgacgccttTTTCTGCTTTGATCATTTTTG
Ccgcaaaaatcatttttcaaaatatggttaaaagatacgtcacccgggag
ggatagggTGAAACTTTGAAGGGAATTcttctctttaattttgatCTCAT
TGTGTTTTAATaaaagccaccttcccaacatccaaaggactttaaatgtg
ttcagcaaacagctaaaccgacGCCGGGTACCAGCTAGTTTGAATAAATT
AGAGATGTGTCAGTGTCTGTTTTTGCCTAAATGAGTGATTGGGATTTCCA
GCTTCCAACTTATGATACCGACCTTTTTTGGGATAATATGATGACTTAGA
TAGGGGTCACCTACAAATCAATTTTGGGTTTGAAAAACATCAATTGACGA
TAGTAGGTGGAAGGTTGTTgacgttttttttcaaatccagAAACAATGAT
TTTTCATTCCATGCGAAATATTACTTCTTGCCATGTTTCTGTTTGGTCGC
TTCGTCTGTTTTGAAAACAGTTccttttgttacatttttacatGAATATT
ATTAGGAAAAAATTGTTAGAAAACAGGCCTAGTGTGAATccaacaatgac
gtcattaaagTTATATCAgaattaaaaattcaatttctcaaaatttactT
ATCAAAActacttcaaattttcactgaaaaattattttgcgtATGTTTTA
AACAGAAATTCAATTTATATGACGTAATTGATATGGCATCTAAAACCATA
TTTTTTGGGTGatacagggctgcaaataaatattttcagtcaatcggaca
tcatgtcgGGACTGAGATGAAATTCTGTCGGACAAACTctaaatcctgtc
ggtcattcagtCTATAAGTTTTCTAAAATCATACAGTCTTGAAAGTTATG
GAAAAAGAGAGTAGGTAAAAGTGACCTTGGAACACCttaagttacgaaga
aagcgatgcGATAAAAGTGAACTTAGAAagacccttgaaagttacaacGA
TaacgagttgataaaagtgagcTTAGagacactcttaaaagttatgaaga
aagcaagtcgataaaaAGTGAACTTAGAAACACGCTTGAAAGTTTCCGCA
GAAAGCAAGTGGGTAAAAAGTGAACTTAGAAACATCCGTTAATAAAAACG
CATGAAATCAAAGTAAactttagaaacactcttgaaagctaaaagaaagt
aAAAGAGTAGTAATAGACAaagagacagggatgtgaaagATTTGTTTTCA
ACTCAAATTAATNTAGTAATAGACAAAGATACAGGGGTGTGAAAGATTTG
TTTTCAACtcaaattaaagtctgtccaaatataattggcagtggaaacaa
gaatgtctgtaacttttgatagtcaaatataattatggaaattgtttttg
cttgttttagaaaatcaaaagcgctatatttgaatgtatttttggttgaa
aaattcgcgatttttagcggttaaatttgcgattgcaaattgaaataccc
cttggtagcacttttctgtgaaatatcaaatctccaacttattactaaag
aacgggggtagtgatatgattgatataacagtttttcgatcataacacat
tttacgatctttttaatgacctcatagccaaactgtgtttagtgttttgg
gaattagcaaagttctttaatgacttaaaaataacaaaggcaatataagt
ttatgcttatcttttcaataaaaactattatactgtgatttcacttcgtt
tcgaaataatcaatgataccaataataccaatgcaccgaaacattttcca
acttttaattgcactgttcaagaaagataacataacccccgtttttagta
ataagttggagatttgatatttcacagaaaagtgctaccaaggggtattt
cgggtcccatatcttccgaaggacttttctgttggtcttgaaatttaaca
aacttcttaatctaaggttgaactaccactggtgtaaaaatgaaagttat
agtataagtagaaaaaaaactcaatttttgcaatcgcaaatttaaccgct
aaaaagcGCGAATTTTCAACGAGAacgtgaaaacatcaaaacttaATCAA
AGCTCTGAGTAAACCCCAATTTCTCATTGTCTCTTCTCGTGCCCGACAGC
AAATCACTCATTTGGCCTTGTCAGACAAGTGAGATTTCTAACATAAAAAT
CAACatcaagaaaaaaagacaattttgaaaattatttttcagaatcttta
aactttttatcatttttagctttttttcttgtgctAGATGTGTAAGTTTC
AAgtattaaatttttgaaatcctgattttaaatttgttcaATTAATAATA
TTGATCATTACAGTATTTTTAGTttgcattgaaaaagaaaagcttcGATA
TTTTCTCCagaatttttcgtttttcgttactttaaaaaaatgatggaCGT
TGTCGTTGTGAAAAATAATTACGGAATCAAAAATGAGCCACAACAGCaac
ttctctattttttcaCACCTATATGTTATTTCACAAGTTTTGCTGTTGTC
ATTGCCGTTCTCGTTGTGACTGGGGAAAGTCTCTATTGACCGATGaccga
cgcttatttgcagccctggtGATATGATTTTGTTCTTTGTCGAAAAACCA
TGTTTTTGGTTGATAAGATTTGGTTCATTGtcgaataatgaattaataaa
GTCAACATTGCTTGCTGTTAGCCAGTACAGACAAGATGATTTCTCTTGTA
TATAAATGCTGTAGTAATAATTAATGCGTTAATAATTCTACTATTTACTC
TTTTTAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAG
GAAGAATGGCGTCTTCATCTACTTTGAAGGTAATATTATGCTGagtttta
ctttcattttcagttttgtAATATGCAATGTTTCTAAAATTATCGATCTT
GGAACTGGTAGGAGGTGATAGTTTANactttaatttttttattagaaatc
aagaaaaggacaataaatttttttcccgGCCGGCCACCCTCATGGACCGG
AAACAGAAAAAATTTTAGGGTCAGCCTAAAGTATTTGCTTATGTCTGTGA
AATTCAGCAATTGTTTTGTCATCTGAAAGCATGGAAACAAGTACTCccat
caaaaaaggaaaaaactaaGGTGAATTGGTGGGATTTAACCAAACTATCA
TTTTCTATTATAGATAATGCTGGAGTCATTGTTAACAACAAAGGAGAGAT
GAAAGGTAGGCTTTTAAATTTAACATTCCTCTCTAGCAAAAAAATCTAAG
AGGATGTTTTGCTGacctcaatttgaaattttacttaTCAGACAAGTTTT
TCTGTATTTTCtgaatgaaatatttttgaaaattatttcatagTGGTAAC
ATGCTCTtagattaaatattttttgatatatGAAAATTCCTTAATAATCT
GGAAATTATTTCACTAAAACTTGGCTTGGTGTGAATTATAAGCATggttc
ataagcatataataagcgtaagctatgcctggatgctatGAGAACTTAAG
cttacacttgcttataaaaaaaacatgtatttgcCTCAAAgatttatcat
tattttttctgaatttttgctcagaattaCATACTAACAATGCTCAAAAT
ATGACAGCCCAATTTTTTCGTCTATTTTAACAGTCTATTTGCAGAAGTTG
AACTTGTCTCTGGGATTAATATGGTCTTTTTGTAACcaaacttattttta
tttttaggctcTGCTATCAACGGCCCAGTTGCAAAGGAATGTGCGGAACT
GTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaattggaaaaaa
atctttaaaagaataTTCATTTGTTTCCAGTATTTACTTCCCTGTTGAGA
TCATTGTATAATTAAAGGTCATTGAAACTTGATTATTTGACTATTTTAGT
GTTTTGGCCGTATTTAactatggaggtataaagaaacaggagatgtATGC
TGTTGTAACCAGGCTTGCCCTTCGATTGAAAAAGTTatgatgtatgcatg
ctcataaacTTATAtgtcgtgcatttttaatgagcttttttatccatagg
tgaaatcttattggctcattgaaGCTTTGAAAATTAGTTGAgtcgagatt
cattgtttctgacgtcagtataagaaaatatttgga

Coding sequence (CDS) from alignment at sc0000145:312578..318913+

>TCONS_00012512 ID=TCONS_00012512|Name=TCONS_00012512|organism=Clytia hemisphaerica|type=CDS|length=2100bp|location=Sequence derived from alignment at sc0000145:312578..318913+ (Clytia hemisphaerica)
ATGTCGAAGAGAGCTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACT
TGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCA
AAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGA
TTGCCTGCCGCTGCCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGG
TAAACCAGAACTTCGAAAGAAAGTTATGCCAGGCGTAGTTATCCGACAAA
GAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATCTACTTTGAAGATAAT
GCTGGAGTCATTGTTAACAACAAAGGAGAGATGAAAGgctcTGCTATCAA
CGGCCCAGTTGCAAAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCA
ATGCTGGAAGTATTCAttaaATGTCGAAGAGAGCTGGAGGAAGAGTCGGA
GGAAAATTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTG
TGCTGACAACACTGGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTA
CCCAAGCTAGATTGAACAGATTGCCTGCCGCTGCCTCAGGAGATCTTTTT
GTTGCTTCAGTCAAGAAGGGTAAACCAGAACTTCGAAAGAAAGTTATGCC
AGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCT
TCATCTACTTTGAAGATAATGCTGGAGTCATTGTTAACAACAAAGGAGAG
ATGAAAGgctcTGCTATCAACGGCCCAGTTGCAAAGGAATGTGCGGAACT
GTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaaATGTCGAAGA
GAGCTGGAGGAAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCC
GTTGGGGCTGTCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTT
CGTTATTGCTGTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCCG
CTGCCTCAGGAGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAA
CTTCGAAAGAAAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTT
CCGAAGGAAGAATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCA
TTGTTAACAACAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTT
GCAAAGGAATGTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAG
TATTCAttaaATGTCGAAGAGAGCTGGAGGAAGAGTCGGAGGAAAATTCC
GCATGGCACTTGGCTTGCCCGTTGGGGCTGTCATGAACTGTGCTGACAAC
ACTGGTGCCAAAAACTTGTTCGTTATTGCTGTAAATGGTACCCAAGCTAG
ATTGAACAGATTGCCTGCCGCTGCCTCAGGAGATCTTTTTGTTGCTTCAG
TCAAGAAGGGTAAACCAGAACTTCGAAAGAAAGTTATGCCAGGCGTAGTT
ATCCGACAAAGAAAAGCTTTCCGAAGGAAGAATGGCGTCTTCATCTACTT
TGAAGATAATGCTGGAGTCATTGTTAACAACAAAGGAGAGATGAAAGgct
cTGCTATCAACGGCCCAGTTGCAAAGGAATGTGCGGAACTGTGGCCCAGG
ATCGCCTCCAATGCTGGAAGTATTCAttaaATGTCGAAGAGAGCTGGAGG
AAGAGTCGGAGGAAAATTCCGCATGGCACTTGGCTTGCCCGTTGGGGCTG
TCATGAACTGTGCTGACAACACTGGTGCCAAAAACTTGTTCGTTATTGCT
GTAAATGGTACCCAAGCTAGATTGAACAGATTGCCTGCCGCTGCCTCAGG
AGATCTTTTTGTTGCTTCAGTCAAGAAGGGTAAACCAGAACTTCGAAAGA
AAGTTATGCCAGGCGTAGTTATCCGACAAAGAAAAGCTTTCCGAAGGAAG
AATGGCGTCTTCATCTACTTTGAAGATAATGCTGGAGTCATTGTTAACAA
CAAAGGAGAGATGAAAGgctcTGCTATCAACGGCCCAGTTGCAAAGGAAT
GTGCGGAACTGTGGCCCAGGATCGCCTCCAATGCTGGAAGTATTCAttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007030XLOC_007030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012512-exon-sc0000145-1491911889:312578..313270TCONS_00012512-exon-sc0000145-1491911889:312578..313270Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1510915933:312578..313270TCONS_00012512-exon-sc0000145-1510915933:312578..313270Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1575043694:312578..313270TCONS_00012512-exon-sc0000145-1575043694:312578..313270Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1491911889:313498..313707TCONS_00012512-exon-sc0000145-1491911889:313498..313707Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1510915933:313498..313707TCONS_00012512-exon-sc0000145-1510915933:313498..313707Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1575043694:313498..313707TCONS_00012512-exon-sc0000145-1575043694:313498..313707Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1491911889:317535..317606TCONS_00012512-exon-sc0000145-1491911889:317535..317606Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1510915933:317535..317606TCONS_00012512-exon-sc0000145-1510915933:317535..317606Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1575043694:317535..317606TCONS_00012512-exon-sc0000145-1575043694:317535..317606Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1491911889:317941..317982TCONS_00012512-exon-sc0000145-1491911889:317941..317982Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1510915933:317941..317982TCONS_00012512-exon-sc0000145-1510915933:317941..317982Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1575043694:317941..317982TCONS_00012512-exon-sc0000145-1575043694:317941..317982Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1491911889:318485..318913TCONS_00012512-exon-sc0000145-1491911889:318485..318913Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1510915933:318485..318913TCONS_00012512-exon-sc0000145-1510915933:318485..318913Clytia hemisphaericaexon
TCONS_00012512-exon-sc0000145-1575043694:318485..318913TCONS_00012512-exon-sc0000145-1575043694:318485..318913Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012512-proteinTCONS_00012512-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000145supercontigsc0000145:312578..318913 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
866.427	862.902	976.866	1087.11	541.885	449.617	638.553	686.187	1092.69	999.618	1146.74	1368.04	1454.09	1509.21	1316.8	1336.31	1434.25	1431.04	780.326	846.206	1535.43	1555.2	1296.14	1145.79	913.194	981.333	1594.9	1596.05	1057.24	1107.33
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000218Ribosomal_L14P
IPR019972Ribosomal_L14P_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00012512 vs. Swiss-Prot (Human)
Match: RL23 (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.049e-71
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:  681 MSKRA-GGRVGGKFRMALGLPVGAVMNCADNTGAKNLFVIAVNGTQARLNRLPAAASGDLFVASVKKGKPELRKKVMPGVVIRQRKAFRRKNGVFIYFEDNAGVIVNNKGEMKGSAINGPVAKECAELWPRIASNAGSI 1094
            MSKR  GG  G KFR++LGLPVGAV+NCADNTGAKNL++I+V G + RLNRLPAA  GD+ +A+VKKGKPELRKKV P VVIRQRK++RRK+GVF+YFEDNAGVIVNNKGEMKGSAI GPVAKECA+LWPRIASNAGSI
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of TCONS_00012512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL232.049e-7179.1460S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
back to top