TCONS_00012512-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012512-protein
Unique NameTCONS_00012512-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012512-protein ID=TCONS_00012512-protein|Name=TCONS_00012512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MSKRAGGRVGGKFRMALGLPVGAVMNCADNTGAKNLFVIAVNGTQARLNR
LPAAASGDLFVASVKKGKPELRKKVMPGVVIRQRKAFRRKNGVFIYFEDN
AGVIVNNKGEMKGSAINGPVAKECAELWPRIASNAGSIH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007030XLOC_007030Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012512TCONS_00012512Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000218Ribosomal_L14P
IPR019972Ribosomal_L14P_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 18..139
e-value: 3.3E-55
score: 199.4
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 21..137
e-value: 1.1E-33
score: 115.8
IPR000218Ribosomal protein L14PGENE3D2.40.150.20coord: 8..138
e-value: 6.1E-46
score: 155.1
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 18..139
score: 17.636
IPR000218Ribosomal protein L14PSUPERFAMILY50193Ribosomal protein L14coord: 11..137
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 78..104

Blast
[Close]
BLAST of TCONS_00012512-protein vs. Swiss-Prot (Human)
Match: RL23 (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.030e-77
Identity = 110/139 (79.14%), Postives = 125/139 (89.93%), Query Frame = 0 
Query:    1 MSKRA-GGRVGGKFRMALGLPVGAVMNCADNTGAKNLFVIAVNGTQARLNRLPAAASGDLFVASVKKGKPELRKKVMPGVVIRQRKAFRRKNGVFIYFEDNAGVIVNNKGEMKGSAINGPVAKECAELWPRIASNAGSI 138
            MSKR  GG  G KFR++LGLPVGAV+NCADNTGAKNL++I+V G + RLNRLPAA  GD+ +A+VKKGKPELRKKV P VVIRQRK++RRK+GVF+YFEDNAGVIVNNKGEMKGSAI GPVAKECA+LWPRIASNAGSI
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of TCONS_00012512-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL231.030e-7779.1460S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
back to top