XLOC_005173 (gene) - C. hemisphaerica

Overview
NameXLOC_005173
Unique NameXLOC_005173
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000091:573187..580885+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005173 ID=XLOC_005173|Name=XLOC_005173|organism=Clytia hemisphaerica|type=gene|length=7699bp|location=Sequence derived from alignment at sc0000091:573187..580885+ (Clytia hemisphaerica)
aaaaaagataaagaaaaaatgagGATTATATTACAGATTTTGTTTTTGGT
TATACTGCTTTTTGAAACTGAAGCCAAATCAAAAAGCGAAGAATACCAAA
AACCAAaacatgatttttttacttCGGCGTCAGATATGGAAGTattgtta
aatgttgaaaagaaGTTGTCTAAGAAGTTTCTTAGATATGTTCGTAAAGA
AGAGGAGAGGCTTGATAAGTTGGAGGATGAGATACGAAACATTGAAGATG
GTTGGCCACAACCAGGTCGTAGTAAAGCTCAATGGTTATCACACGTCACT
AACTCGTACACTATTTTAAAGAGATTCTCAACCTTTTGGCCgaaaattgg
tgatttttcAAAGTCTAATACAACCAAAGATCACATGCTGAGATTGTTTT
CTGATTTAAGTCGAATCAAAGAATCACTTCCCGCCGAGGAAGATATGAAA
GGAGCGTTGAATGCTGTCTTCAGGTTACAAGACACTTATGATTTACCTGC
AGCAGATTTTATTGATGGTTTGGGAGGAGACCGCGCGCATAAATTAAGCG
TTGAAGAGATTTTCGAGATTGGTTTTCTATGTGTAGGCATCAATGATCAT
TACCACGCACAGCAATGGTTAAACGAAGCTCTGAACCGCTTCCCGGTTGG
CATACAACAAGTTGGATTCTTAGATAGAATCTCCCTTTTAGGTGAGGATT
TTTTTAATAGGCAATGGCATGGTCAAAActtgatgttttttataagaata
ttcatcatGATAAAGTTGGcctaaaaatttagaatatcACTATCATGGAG
TTTGGCAactgaagctaagaatgtcCTTTTTAGAACATTTCTAACATGAA
ATTGTCATCTATCCCCCACTAAGGCTAAAAGGTTCATAAAGATGCTATTT
TATACTTTATAGGTACATGaatcaaaaagttaacaaaattttttgaattt
tcttacaAAACAAAACGTGTACTTTCTTATTATTTGTAAAAAGAATTGTT
CATCGATTGCaaatacttttttcttttataagaacaacgaggctcaaaat
cgctaaaaaataaaacaatttatgAACAATaatgagcctgaaattactca
atttcaagcaatatagggagtcaaagtagtaaaaattgggtataacgcct
aaaatacctcaattacaccctaAATCATTGTCATGAAATCAtattgaata
cacgtttttttttattagaacacctaaaatttggctgagcctggatgtgc
ttatttttttaagcaattttcagcctaaaatgtttcttaaatgcgttctt
aatttttcaaatcgacaatatcatgcaaaataaatagcacttaaaattag
taaaaatttggacaatatttgaccctcgattttagaaaatccatgcctga
gttcggttaaaactgcttgaaaagagtagtaaaattgtagtttcttgtca
tttttttccaaactgaggctgggcatgttcttacgatgttcttaattttt
cgacgaatttcagcctcaatgttcttataaactgggttctaataaaaaaa
aaacgtgtagtgctCGATGATAAACAAACAAGATACCAGAGCCAAGTAAA
ATTTAAAAGCGCCAAACTTTAAGTTATgtacttttattgaaagaaaactt
tttttcaattacACCCTAGAATAAGAGCAATTGAAGTGCCAAAAAAACaa
gaattcttataaaaaagtgtactgTAAATTTTAGAGGTACGGCTTAAAAC
CTTGGCTACAAATATGTTATAAAAATTACaagattttaagaaataatgga
ATACTGTACTACTATACAAAGAATTCATCTTTacaaaaagcgtgtatttt
gaaaagaaagatcACTCACTTATCAGAGAAACCTTTTTGTTGTTCTTGGT
GAAACTGATTTGATATCTTTCGCTCGAACCTGTTGGCCCTTCTTCTTGCC
CTAAAGAAAATGGTGAATACTTCCATTACTTTCAAAGTgttgaaaaacca
aaaaaatctacaacgaaaaagaaataaaatacacaaacaacTTTCGAaca
aataaagagaaaaagaaaaatgatgattttacaaaaatcaaaggAATTAT
ACAGAATGTGAGCTTGAAATTAAAGGCCCCCCTCCTCAatggcataccgg
ataagtgggatgggggaacctaagtgggaacctaaatgaacacctgaaaa
gtgggatgggggaacctaagtgggaacctaaatgaacaccggNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCGTGGATC
TATGCTTATGTGTATTGAAACGTGGCAAGCCGTGTAATATGTTCTATTTT
actatcaaacatttttaattaatgaagtgtattcacacgctgtactgttt
ggttggtacagaaagaaaaacgagctagaatccgttaaatgctaagcgac
cccagccctgacccgaaaattggagctgcgaataaaaaacaatgtgtatt
gcatcaagagtgaacaaaaactagatcgtaaataatgttttactagatac
tgtattcaagcaaattagatccgcgcaaaagaaagaagaggctctaagtt
atccatcgagctatgaacgaacttctaattccttctagatttgaagatat
gacggtttaaagtttaaagtttaaagtNNGAGTAAATAACTGGTGTTCTT
ATtatgataaaaggttttttccacaggaaaaagtatggaaatcacatgct
tggtaaaactgatttccgagcatgtgatcctgcaaaaaatcacatgcgtg
tgaaaatgcAATTCACAAGTCATCTTTTCTCAACTTAAATGGAGTGTCTG
ACTAGATATAAAATCACAAATAGGATTGTTTGTCTTTCTTAGAGAGAGAG
GTTTAATACCCTAAAAGTAACTcacttctattctatttaacAAGTGAGAA
AAGATGGATTGTGAATTACATTTTCACACGCATGTGATTCACGGATATTT
TCCTGTGTTCTTTCCTTGcatataatatctttcttatctttatgtatttg
tttttaaagaaaaatatttcaattctattaataattaaacaacttaggtt
cccacttagNTAGATAAAGTTTTCCAGGTAGGGAGATAATGGGGGCGTAT
CATGAGGAAGAATTGAAGGCGTAGTCCTGGTGGAGGGCGGTTGAAAAGAA
CATATTATAAAGCATAACCCTTTTAACCATACTTAAGCCTACAAAACTTA
AGTATTGTCGAGAGTATTGTTTATCCGAGGTTCAAAAAAAAAAGCATTTA
CAAAACATAAAGAGAGGTTAGCAAAGACTTAGCCTttgtttataataaaa
aaagtgtcTACCTGGAACCAACCCTGTCCTGCTGATGGAGAACAAACCAT
GTTATTAAAGCCTTATTAGTCTTAACTGATTTGATCCTCCTGCAAAAAAA
ACACATGACCGGGTAAGCAAAAGTCAAGTAATAAAACGAGTTGAGAAGAT
ACTTGTTCGGGATTATATGGAATTTTaatacaaaatatttctttatttct
tttcagAATATTTGGCATGGTCTGAATACCACTTAGGGCACTTGGAACAA
GCTGTTAACCTTACCGCACAGATTGTACACATTGATCCAACTCACAAATC
AGCACCCATCAATCTAGAGTTATATCAACATGATTTAAAAGCTAGTCAAT
TCAATCCTAACATCCGCAAGAAAGTTTTCCGGCGCGAAAAAGATTGGCAG
ACACGTCACAACAATCTGTGTAACGGGAAAGAAGTCATGGAGCAGGAAAT
TATTGATAAGTTGTATTGTGAATTCGATAACAAACGTCACCCACGTTTTA
TCCTAAAGCCACTCAAAGTTGAACATCTGTACAACGAGCCAGGTTTAACA
ATGTATCATGATTTACTTCGTGATTGGGAGATAGATGCCGTCAAAGAGAA
GGCGCGTCCGCTTTTAAAACGCGCGACCGTTCATGATCCGAAAACGGGTG
AATTGGTTTTCGCAGATTATCGGATTAGTAAGAGCGCCTGGTTAAAACCG
GAGATGGATCAAATAGCAAACCACGTGATCAATAAAGTTGGTGACGTCAT
TAATCTCGATATGCGATACTCAGAGAGTCTGCAAGTCCAAAATTACGGTT
TAGCGGGTCAATATGAGCCACATTTTGACCATTCAACTGTCCGCACACCA
AAACAATTCAAGGAATTGGGTGGAAACCGTATCGCTACTATGTTGTTATA
TATGAGTGAAGTTGAACGAGGAGGTGCCACCATTTTTGTTAACACTGGCC
CAGGAGTCGCCATCTGGCCGGAGAAAGGTGCCGGTGTCTTTTGGTATAAT
CTATTACGTAATGGTGATGGAGATAAAAAGACAAGACATGCAGGCTGTCC
AGTTCTTGTTGGACATAAATGGGTGTCTAACCTGTGGATACATGAACATG
GACAAGAGTTTAGAAGGCAATGCTCGCTAAATATGCatgaataagaaatt
taaaactaCGTAAAAAAAAATGGCTATCGTAAATTGAAAACTTTCAGGCT
GAAGAAGTGAGGTTAAAGAAGTTGAACGTTCTCTTCATGTTAAAACCAAT
ACATAAAactgaaaaggtgtattagatgATATATCATTTGAGGAGGGTTT
ACTCCCAAAATATTaataaaaatcaggaaaataatTGTAAGAAGTATAGA
TTTTGTATCGAATTTCGGAGGTGctggaagaaattttgattgtCGATAAA
TACCGACGCGATTGCGTtaaatcataaaatttcaatCATATTTGAATTTT
CATATATCTTTAAATTTCTATGTATGAGTTTTTTATGtacaaatgtttaa
aatatttccaaGATATTTACACCTCAGCAAAAAGCATGACTTAATATTAT
ATACAAAACGATGAGATTGTTATAAATATTCAATCAACAACACTTAGctg
tttttgtttccttgccatTTGCGTACGTAAATCACGAACTTGGGTCNAAT
ATTTACATCTCAGCAAAAAGCATGACTTAATAATATATACAAAACGATGA
GATTGTTATAAATATTCAATCAACAACACTTAGctgtttttgtttccttg
ccatTTGCGTACGTAAATCACGAACTTGGGTCATCAAGTCCATCTGTCGA
CCAGTGAAAGAGCCTCGATCACTCAAGTCGTCCTCGTCCCTCGCTAACAC
TGCCAGGAGAGAAAAATCCAGCTGATCATTTTatagatttaaaaattgaa
atttcaatacaaACTTGGTTTATTGATACACTAGTAAAcctagagagtct
atcaccatatttccctaataCTCTGCCTGGAATTGCTTGGATATCGAAGG
CAATCCATTGCGGcgcaagtctgtgatcgaaacctccGCACTACCAATCG
ACTTGTGGTCTACTAACTTTCGCTAGATCGCAACATTATAAAAGTGAACT
TAGATGATTTTTTGTTGTGCTAATGTCATTGGCAGAATAACAAAGGGACG
ACTAAGGGCTGCATCACTGACAATTAGTAAAACCCTGCACTGAACTATGT
TTTTATGAAGGTGACACCCGCGAAGAAGACACCAAATGCGCTACATCACA
AATATCGAACGAAAAGTAGATCTaacgctctcgatgcatttaaaCCACTA
TCGATTAGTGGAACCATTAGAGACTCTGGTTAGCCAGGAATGAGAAACTG
TCTCCAGGGTTCATAAAAAAGCTCAGTGGTGTGTACGTGCATTGGCCATG
ACATTCCCGGGGGCGTTCCCACCCAATATCCTGTCCCAGTTCGTGCTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009213TCONS_00009213Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
prolyl 4-hydroxylaseTCONS_00009213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:573187..580885 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.03 tpm) - - (13.11 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14	0.12	0.15	0.19	7.75	8.02	11.8	13.11	5.18	1.08	10.67	9.28	8.56	6.15	5.82	12.64	11.79	9.91	0.45	0.11	7.26	7.45	3.37	3.73	2.87	3.03	1.32	0.19	0.03	0.04