TCONS_00009213 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009213
Unique Name	TCONS_00009213
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2934

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000091:573187..580885+
coding sequence from alignment at sc0000091:573187..580885+

transcript sequence

>TCONS_00009213 ID=TCONS_00009213|Name=TCONS_00009213|organism=Clytia hemisphaerica|type=transcript|length=2934bp
aaaaaagataaagaaaaaatgagGATTATATTACAGATTTTGTTTTTGGT
TATACTGCTTTTTGAAACTGAAGCCAAATCAAAAAGCGAAGAATACCAAA
AACCAAaacatgatttttttacttCGGCGTCAGATATGGAAGTattgtta
aatgttgaaaagaaGTTGTCTAAGAAGTTTCTTAGATATGTTCGTAAAGA
AGAGGAGAGGCTTGATAAGTTGGAGGATGAGATACGAAACATTGAAGATG
GTTGGCCACAACCAGGTCGTAGTAAAGCTCAATGGTTATCACACGTCACT
AACTCGTACACTATTTTAAAGAGATTCTCAACCTTTTGGCCgaaaattgg
tgatttttcAAAGTCTAATACAACCAAAGATCACATGCTGAGATTGTTTT
CTGATTTAAGTCGAATCAAAGAATCACTTCCCGCCGAGGAAGATATGAAA
GGAGCGTTGAATGCTGTCTTCAGGTTACAAGACACTTATGATTTACCTGC
AGCAGATTTTATTGATGGTTTGGGAGGAGACCGCGCGCATAAATTAAGCG
TTGAAGAGATTTTCGAGATTGGTTTTCTATGTGTAGGCATCAATGATCAT
TACCACGCACAGCAATGGTTAAACGAAGCTCTGAACCGCTTCCCGGTTGG
CATACAACAAGTTGGATTCTTAGATAGAATCTCCCTTTTAGAATATTTGG
CATGGTCTGAATACCACTTAGGGCACTTGGAACAAGCTGTTAACCTTACC
GCACAGATTGTACACATTGATCCAACTCACAAATCAGCACCCATCAATCT
AGAGTTATATCAACATGATTTAAAAGCTAGTCAATTCAATCCTAACATCC
GCAAGAAAGTTTTCCGGCGCGAAAAAGATTGGCAGACACGTCACAACAAT
CTGTGTAACGGGAAAGAAGTCATGGAGCAGGAAATTATTGATAAGTTGTA
TTGTGAATTCGATAACAAACGTCACCCACGTTTTATCCTAAAGCCACTCA
AAGTTGAACATCTGTACAACGAGCCAGGTTTAACAATGTATCATGATTTA
CTTCGTGATTGGGAGATAGATGCCGTCAAAGAGAAGGCGCGTCCGCTTTT
AAAACGCGCGACCGTTCATGATCCGAAAACGGGTGAATTGGTTTTCGCAG
ATTATCGGATTAGTAAGAGCGCCTGGTTAAAACCGGAGATGGATCAAATA
GCAAACCACGTGATCAATAAAGTTGGTGACGTCATTAATCTCGATATGCG
ATACTCAGAGAGTCTGCAAGTCCAAAATTACGGTTTAGCGGGTCAATATG
AGCCACATTTTGACCATTCAACTGTCCGCACACCAAAACAATTCAAGGAA
TTGGGTGGAAACCGTATCGCTACTATGTTGTTATATATGAGTGAAGTTGA
ACGAGGAGGTGCCACCATTTTTGTTAACACTGGCCCAGGAGTCGCCATCT
GGCCGGAGAAAGGTGCCGGTGTCTTTTGGTATAATCTATTACGTAATGGT
GATGGAGATAAAAAGACAAGACATGCAGGCTGTCCAGTTCTTGTTGGACA
TAAATGGGTGTCTAACCTGTGGATACATGAACATGGACAAGAGTTTAGAA
GGCAATGCTCGCTAAATATGCatgaataagaaatttaaaactaCGTAAAA
AAAAATGGCTATCGTAAATTGAAAACTTTCAGGCTGAAGAAGTGAGGTTA
AAGAAGTTGAACGTTCTCTTCATGTTAAAACCAATACATAAAactgaaaa
ggtgtattagatgATATATCATTTGAGGAGGGTTTACTCCCAAAATATTa
ataaaaatcaggaaaataatTGTAAGAAGTATAGATTTTGTATCGAATTT
CGGAGGTGctggaagaaattttgattgtCGATAAATACCGACGCGATTGC
GTtaaatcataaaatttcaatCATATTTGAATTTTCATATATCTTTAAAT
TTCTATGTATGAGTTTTTTATGtacaaatgtttaaaatatttccaaGATA
TTTACACCTCAGCAAAAAGCATGACTTAATATTATATACAAAACGATGAG
ATTGTTATAAATATTCAATCAACAACACTTAGctgtttttgtttccttgc
catTTGCGTACGTAAATCACGAACTTGGGTCNAATATTTACATCTCAGCA
AAAAGCATGACTTAATAATATATACAAAACGATGAGATTGTTATAAATAT
TCAATCAACAACACTTAGctgtttttgtttccttgccatTTGCGTACGTA
AATCACGAACTTGGGTCATCAAGTCCATCTGTCGACCAGTGAAAGAGCCT
CGATCACTCAAGTCGTCCTCGTCCCTCGCTAACACTGCCAGGAGAGAAAA
ATCCAGCTGATCATTTTatagatttaaaaattgaaatttcaatacaaACT
TGGTTTATTGATACACTAGTAAAcctagagagtctatcaccatatttccc
taataCTCTGCCTGGAATTGCTTGGATATCGAAGGCAATCCATTGCGGcg
caagtctgtgatcgaaacctccGCACTACCAATCGACTTGTGGTCTACTA
ACTTTCGCTAGATCGCAACATTATAAAAGTGAACTTAGATGATTTTTTGT
TGTGCTAATGTCATTGGCAGAATAACAAAGGGACGACTAAGGGCTGCATC
ACTGACAATTAGTAAAACCCTGCACTGAACTATGTTTTTATGAAGGTGAC
ACCCGCGAAGAAGACACCAAATGCGCTACATCACAAATATCGAACGAAAA
GTAGATCTaacgctctcgatgcatttaaaCCACTATCGATTAGTGGAACC
ATTAGAGACTCTGGTTAGCCAGGAATGAGAAACTGTCTCCAGGGTTCATA
AAAAAGCTCAGTGGTGTGTACGTGCATTGGCCATGACATTCCCGGGGGCG
TTCCCACCCAATATCCTGTCCCAGTTCGTGCTTG

Run BLAST on NCBI

protein sequence of prolyl 4-hydroxylase

>TCONS_00009213-protein ID=TCONS_00009213-protein|Name=prolyl 4-hydroxylase|organism=Clytia hemisphaerica|type=polypeptide|length=542bp
KKDKEKMRIILQILFLVILLFETEAKSKSEEYQKPKHDFFTSASDMEVLL
NVEKKLSKKFLRYVRKEEERLDKLEDEIRNIEDGWPQPGRSKAQWLSHVT
NSYTILKRFSTFWPKIGDFSKSNTTKDHMLRLFSDLSRIKESLPAEEDMK
GALNAVFRLQDTYDLPAADFIDGLGGDRAHKLSVEEIFEIGFLCVGINDH
YHAQQWLNEALNRFPVGIQQVGFLDRISLLEYLAWSEYHLGHLEQAVNLT
AQIVHIDPTHKSAPINLELYQHDLKASQFNPNIRKKVFRREKDWQTRHNN
LCNGKEVMEQEIIDKLYCEFDNKRHPRFILKPLKVEHLYNEPGLTMYHDL
LRDWEIDAVKEKARPLLKRATVHDPKTGELVFADYRISKSAWLKPEMDQI
ANHVINKVGDVINLDMRYSESLQVQNYGLAGQYEPHFDHSTVRTPKQFKE
LGGNRIATMLLYMSEVERGGATIFVNTGPGVAIWPEKGAGVFWYNLLRNG
DGDKKTRHAGCPVLVGHKWVSNLWIHEHGQEFRRQCSLNMHE

Run BLAST on NCBI

transcript from alignment at sc0000091:573187..580885+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009213 ID=TCONS_00009213|Name=TCONS_00009213|organism=Clytia hemisphaerica|type=transcript|length=7699bp|location=Sequence derived from alignment at sc0000091:573187..580885+ (Clytia hemisphaerica)
aaaaaagataaagaaaaaatgagGATTATATTACAGATTTTGTTTTTGGT
TATACTGCTTTTTGAAACTGAAGCCAAATCAAAAAGCGAAGAATACCAAA
AACCAAaacatgatttttttacttCGGCGTCAGATATGGAAGTattgtta
aatgttgaaaagaaGTTGTCTAAGAAGTTTCTTAGATATGTTCGTAAAGA
AGAGGAGAGGCTTGATAAGTTGGAGGATGAGATACGAAACATTGAAGATG
GTTGGCCACAACCAGGTCGTAGTAAAGCTCAATGGTTATCACACGTCACT
AACTCGTACACTATTTTAAAGAGATTCTCAACCTTTTGGCCgaaaattgg
tgatttttcAAAGTCTAATACAACCAAAGATCACATGCTGAGATTGTTTT
CTGATTTAAGTCGAATCAAAGAATCACTTCCCGCCGAGGAAGATATGAAA
GGAGCGTTGAATGCTGTCTTCAGGTTACAAGACACTTATGATTTACCTGC
AGCAGATTTTATTGATGGTTTGGGAGGAGACCGCGCGCATAAATTAAGCG
TTGAAGAGATTTTCGAGATTGGTTTTCTATGTGTAGGCATCAATGATCAT
TACCACGCACAGCAATGGTTAAACGAAGCTCTGAACCGCTTCCCGGTTGG
CATACAACAAGTTGGATTCTTAGATAGAATCTCCCTTTTAGGTGAGGATT
TTTTTAATAGGCAATGGCATGGTCAAAActtgatgttttttataagaata
ttcatcatGATAAAGTTGGcctaaaaatttagaatatcACTATCATGGAG
TTTGGCAactgaagctaagaatgtcCTTTTTAGAACATTTCTAACATGAA
ATTGTCATCTATCCCCCACTAAGGCTAAAAGGTTCATAAAGATGCTATTT
TATACTTTATAGGTACATGaatcaaaaagttaacaaaattttttgaattt
tcttacaAAACAAAACGTGTACTTTCTTATTATTTGTAAAAAGAATTGTT
CATCGATTGCaaatacttttttcttttataagaacaacgaggctcaaaat
cgctaaaaaataaaacaatttatgAACAATaatgagcctgaaattactca
atttcaagcaatatagggagtcaaagtagtaaaaattgggtataacgcct
aaaatacctcaattacaccctaAATCATTGTCATGAAATCAtattgaata
cacgtttttttttattagaacacctaaaatttggctgagcctggatgtgc
ttatttttttaagcaattttcagcctaaaatgtttcttaaatgcgttctt
aatttttcaaatcgacaatatcatgcaaaataaatagcacttaaaattag
taaaaatttggacaatatttgaccctcgattttagaaaatccatgcctga
gttcggttaaaactgcttgaaaagagtagtaaaattgtagtttcttgtca
tttttttccaaactgaggctgggcatgttcttacgatgttcttaattttt
cgacgaatttcagcctcaatgttcttataaactgggttctaataaaaaaa
aaacgtgtagtgctCGATGATAAACAAACAAGATACCAGAGCCAAGTAAA
ATTTAAAAGCGCCAAACTTTAAGTTATgtacttttattgaaagaaaactt
tttttcaattacACCCTAGAATAAGAGCAATTGAAGTGCCAAAAAAACaa
gaattcttataaaaaagtgtactgTAAATTTTAGAGGTACGGCTTAAAAC
CTTGGCTACAAATATGTTATAAAAATTACaagattttaagaaataatgga
ATACTGTACTACTATACAAAGAATTCATCTTTacaaaaagcgtgtatttt
gaaaagaaagatcACTCACTTATCAGAGAAACCTTTTTGTTGTTCTTGGT
GAAACTGATTTGATATCTTTCGCTCGAACCTGTTGGCCCTTCTTCTTGCC
CTAAAGAAAATGGTGAATACTTCCATTACTTTCAAAGTgttgaaaaacca
aaaaaatctacaacgaaaaagaaataaaatacacaaacaacTTTCGAaca
aataaagagaaaaagaaaaatgatgattttacaaaaatcaaaggAATTAT
ACAGAATGTGAGCTTGAAATTAAAGGCCCCCCTCCTCAatggcataccgg
ataagtgggatgggggaacctaagtgggaacctaaatgaacacctgaaaa
gtgggatgggggaacctaagtgggaacctaaatgaacaccggNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCCCCCGTGGATC
TATGCTTATGTGTATTGAAACGTGGCAAGCCGTGTAATATGTTCTATTTT
actatcaaacatttttaattaatgaagtgtattcacacgctgtactgttt
ggttggtacagaaagaaaaacgagctagaatccgttaaatgctaagcgac
cccagccctgacccgaaaattggagctgcgaataaaaaacaatgtgtatt
gcatcaagagtgaacaaaaactagatcgtaaataatgttttactagatac
tgtattcaagcaaattagatccgcgcaaaagaaagaagaggctctaagtt
atccatcgagctatgaacgaacttctaattccttctagatttgaagatat
gacggtttaaagtttaaagtttaaagtNNGAGTAAATAACTGGTGTTCTT
ATtatgataaaaggttttttccacaggaaaaagtatggaaatcacatgct
tggtaaaactgatttccgagcatgtgatcctgcaaaaaatcacatgcgtg
tgaaaatgcAATTCACAAGTCATCTTTTCTCAACTTAAATGGAGTGTCTG
ACTAGATATAAAATCACAAATAGGATTGTTTGTCTTTCTTAGAGAGAGAG
GTTTAATACCCTAAAAGTAACTcacttctattctatttaacAAGTGAGAA
AAGATGGATTGTGAATTACATTTTCACACGCATGTGATTCACGGATATTT
TCCTGTGTTCTTTCCTTGcatataatatctttcttatctttatgtatttg
tttttaaagaaaaatatttcaattctattaataattaaacaacttaggtt
cccacttagNTAGATAAAGTTTTCCAGGTAGGGAGATAATGGGGGCGTAT
CATGAGGAAGAATTGAAGGCGTAGTCCTGGTGGAGGGCGGTTGAAAAGAA
CATATTATAAAGCATAACCCTTTTAACCATACTTAAGCCTACAAAACTTA
AGTATTGTCGAGAGTATTGTTTATCCGAGGTTCAAAAAAAAAAGCATTTA
CAAAACATAAAGAGAGGTTAGCAAAGACTTAGCCTttgtttataataaaa
aaagtgtcTACCTGGAACCAACCCTGTCCTGCTGATGGAGAACAAACCAT
GTTATTAAAGCCTTATTAGTCTTAACTGATTTGATCCTCCTGCAAAAAAA
ACACATGACCGGGTAAGCAAAAGTCAAGTAATAAAACGAGTTGAGAAGAT
ACTTGTTCGGGATTATATGGAATTTTaatacaaaatatttctttatttct
tttcagAATATTTGGCATGGTCTGAATACCACTTAGGGCACTTGGAACAA
GCTGTTAACCTTACCGCACAGATTGTACACATTGATCCAACTCACAAATC
AGCACCCATCAATCTAGAGTTATATCAACATGATTTAAAAGCTAGTCAAT
TCAATCCTAACATCCGCAAGAAAGTTTTCCGGCGCGAAAAAGATTGGCAG
ACACGTCACAACAATCTGTGTAACGGGAAAGAAGTCATGGAGCAGGAAAT
TATTGATAAGTTGTATTGTGAATTCGATAACAAACGTCACCCACGTTTTA
TCCTAAAGCCACTCAAAGTTGAACATCTGTACAACGAGCCAGGTTTAACA
ATGTATCATGATTTACTTCGTGATTGGGAGATAGATGCCGTCAAAGAGAA
GGCGCGTCCGCTTTTAAAACGCGCGACCGTTCATGATCCGAAAACGGGTG
AATTGGTTTTCGCAGATTATCGGATTAGTAAGAGCGCCTGGTTAAAACCG
GAGATGGATCAAATAGCAAACCACGTGATCAATAAAGTTGGTGACGTCAT
TAATCTCGATATGCGATACTCAGAGAGTCTGCAAGTCCAAAATTACGGTT
TAGCGGGTCAATATGAGCCACATTTTGACCATTCAACTGTCCGCACACCA
AAACAATTCAAGGAATTGGGTGGAAACCGTATCGCTACTATGTTGTTATA
TATGAGTGAAGTTGAACGAGGAGGTGCCACCATTTTTGTTAACACTGGCC
CAGGAGTCGCCATCTGGCCGGAGAAAGGTGCCGGTGTCTTTTGGTATAAT
CTATTACGTAATGGTGATGGAGATAAAAAGACAAGACATGCAGGCTGTCC
AGTTCTTGTTGGACATAAATGGGTGTCTAACCTGTGGATACATGAACATG
GACAAGAGTTTAGAAGGCAATGCTCGCTAAATATGCatgaataagaaatt
taaaactaCGTAAAAAAAAATGGCTATCGTAAATTGAAAACTTTCAGGCT
GAAGAAGTGAGGTTAAAGAAGTTGAACGTTCTCTTCATGTTAAAACCAAT
ACATAAAactgaaaaggtgtattagatgATATATCATTTGAGGAGGGTTT
ACTCCCAAAATATTaataaaaatcaggaaaataatTGTAAGAAGTATAGA
TTTTGTATCGAATTTCGGAGGTGctggaagaaattttgattgtCGATAAA
TACCGACGCGATTGCGTtaaatcataaaatttcaatCATATTTGAATTTT
CATATATCTTTAAATTTCTATGTATGAGTTTTTTATGtacaaatgtttaa
aatatttccaaGATATTTACACCTCAGCAAAAAGCATGACTTAATATTAT
ATACAAAACGATGAGATTGTTATAAATATTCAATCAACAACACTTAGctg
tttttgtttccttgccatTTGCGTACGTAAATCACGAACTTGGGTCNAAT
ATTTACATCTCAGCAAAAAGCATGACTTAATAATATATACAAAACGATGA
GATTGTTATAAATATTCAATCAACAACACTTAGctgtttttgtttccttg
ccatTTGCGTACGTAAATCACGAACTTGGGTCATCAAGTCCATCTGTCGA
CCAGTGAAAGAGCCTCGATCACTCAAGTCGTCCTCGTCCCTCGCTAACAC
TGCCAGGAGAGAAAAATCCAGCTGATCATTTTatagatttaaaaattgaa
atttcaatacaaACTTGGTTTATTGATACACTAGTAAAcctagagagtct
atcaccatatttccctaataCTCTGCCTGGAATTGCTTGGATATCGAAGG
CAATCCATTGCGGcgcaagtctgtgatcgaaacctccGCACTACCAATCG
ACTTGTGGTCTACTAACTTTCGCTAGATCGCAACATTATAAAAGTGAACT
TAGATGATTTTTTGTTGTGCTAATGTCATTGGCAGAATAACAAAGGGACG
ACTAAGGGCTGCATCACTGACAATTAGTAAAACCCTGCACTGAACTATGT
TTTTATGAAGGTGACACCCGCGAAGAAGACACCAAATGCGCTACATCACA
AATATCGAACGAAAAGTAGATCTaacgctctcgatgcatttaaaCCACTA
TCGATTAGTGGAACCATTAGAGACTCTGGTTAGCCAGGAATGAGAAACTG
TCTCCAGGGTTCATAAAAAAGCTCAGTGGTGTGTACGTGCATTGGCCATG
ACATTCCCGGGGGCGTTCCCACCCAATATCCTGTCCCAGTTCGTGCTTG

Coding sequence (CDS) from alignment at sc0000091:573187..580885+

>TCONS_00009213 ID=TCONS_00009213|Name=TCONS_00009213|organism=Clytia hemisphaerica|type=CDS|length=3258bp|location=Sequence derived from alignment at sc0000091:573187..580885+ (Clytia hemisphaerica)
aaaaaagataaagaaaaaatgagGATTATATTACAGATTTTGTTTTTGGT
TATACTGCTTTTTGAAACTGAAGCCAAATCAAAAAGCGAAGAATACCAAA
AACCAAaacatgatttttttacttCGGCGTCAGATATGGAAGTattgtta
aatgttgaaaagaaGTTGTCTAAGAAGTTTCTTAGATATGTTCGTAAAGA
AGAGGAGAGGCTTGATAAGTTGGAGGATGAGATACGAAACATTGAAGATG
GTTGGCCACAACCAGGTCGTAGTAAAGCTCAATGGTTATCACACGTCACT
AACTCGTACACTATTTTAAAGAGATTCTCAACCTTTTGGCCgaaaattgg
tgatttttcAAAGTCTAATACAACCAAAGATCACATGCTGAGATTGTTTT
CTGATTTAAGTCGAATCAAAGAATCACTTCCCGCCGAGGAAGATATGAAA
GGAGCGTTGAATGCTGTCTTCAGGTTACAAGACACTTATGATTTACCTGC
AGCAGATTTTATTGATGGTTTGGGAGGAGACCGCGCGCATAAATTAAGCG
TTGAAGAGATTTTCGAGATTGGTTTTCTATGTGTAGGCATCAATGATCAT
TACCACGCACAGCAATGGTTAAACGAAGCTCTGAACCGCTTCCCGGTTGG
CATACAACAAGTTGGATTCTTAGATAGAATCTCCCTTTTAGAATATTTGG
CATGGTCTGAATACCACTTAGGGCACTTGGAACAAGCTGTTAACCTTACC
GCACAGATTGTACACATTGATCCAACTCACAAATCAGCACCCATCAATCT
AGAGTTATATCAACATGATTTAAAAGCTAGTCAATTCAATCCTAACATCC
GCAAGAAAGTTTTCCGGCGCGAAAAAGATTGGCAGACACGTCACAACAAT
CTGTGTAACGGGAAAGAAGTCATGGAGCAGGAAATTATTGATAAGTTGTA
TTGTGAATTCGATAACAAACGTCACCCACGTTTTATCCTAAAGCCACTCA
AAGTTGAACATCTGTACAACGAGCCAGGTTTAACAATGTATCATGATTTA
CTTCGTGATTGGGAGATAGATGCCGTCAAAGAGAAGGCGCGTCCGCTTTT
AAAACGCGCGACCGTTCATGATCCGAAAACGGGTGAATTGGTTTTCGCAG
ATTATCGGATTAGTAAGAGCGCCTGGTTAAAACCGGAGATGGATCAAATA
GCAAACCACGTGATCAATAAAGTTGGTGACGTCATTAATCTCGATATGCG
ATACTCAGAGAGTCTGCAAGTCCAAAATTACGGTTTAGCGGGTCAATATG
AGCCACATTTTGACCATTCAACTGTCCGCACACCAAAACAATTCAAGGAA
TTGGGTGGAAACCGTATCGCTACTATGTTGTTATATATGAGTGAAGTTGA
ACGAGGAGGTGCCACCATTTTTGTTAACACTGGCCCAGGAGTCGCCATCT
GGCCGGAGAAAGGTGCCGGTGTCTTTTGGTATAATCTATTACGTAATGGT
GATGGAGATAAAAAGACAAGACATGCAGGCTGTCCAGTTCTTGTTGGACA
TAAATGGGTGTCTAACCTGTGGATACATGAACATGGACAAGAGTTTAGAA
GGCAATGCTCGCTAAATATGCatgaataaaaaaaagataaagaaaaaatg
agGATTATATTACAGATTTTGTTTTTGGTTATACTGCTTTTTGAAACTGA
AGCCAAATCAAAAAGCGAAGAATACCAAAAACCAAaacatgattttttta
cttCGGCGTCAGATATGGAAGTattgttaaatgttgaaaagaaGTTGTCT
AAGAAGTTTCTTAGATATGTTCGTAAAGAAGAGGAGAGGCTTGATAAGTT
GGAGGATGAGATACGAAACATTGAAGATGGTTGGCCACAACCAGGTCGTA
GTAAAGCTCAATGGTTATCACACGTCACTAACTCGTACACTATTTTAAAG
AGATTCTCAACCTTTTGGCCgaaaattggtgatttttcAAAGTCTAATAC
AACCAAAGATCACATGCTGAGATTGTTTTCTGATTTAAGTCGAATCAAAG
AATCACTTCCCGCCGAGGAAGATATGAAAGGAGCGTTGAATGCTGTCTTC
AGGTTACAAGACACTTATGATTTACCTGCAGCAGATTTTATTGATGGTTT
GGGAGGAGACCGCGCGCATAAATTAAGCGTTGAAGAGATTTTCGAGATTG
GTTTTCTATGTGTAGGCATCAATGATCATTACCACGCACAGCAATGGTTA
AACGAAGCTCTGAACCGCTTCCCGGTTGGCATACAACAAGTTGGATTCTT
AGATAGAATCTCCCTTTTAGAATATTTGGCATGGTCTGAATACCACTTAG
GGCACTTGGAACAAGCTGTTAACCTTACCGCACAGATTGTACACATTGAT
CCAACTCACAAATCAGCACCCATCAATCTAGAGTTATATCAACATGATTT
AAAAGCTAGTCAATTCAATCCTAACATCCGCAAGAAAGTTTTCCGGCGCG
AAAAAGATTGGCAGACACGTCACAACAATCTGTGTAACGGGAAAGAAGTC
ATGGAGCAGGAAATTATTGATAAGTTGTATTGTGAATTCGATAACAAACG
TCACCCACGTTTTATCCTAAAGCCACTCAAAGTTGAACATCTGTACAACG
AGCCAGGTTTAACAATGTATCATGATTTACTTCGTGATTGGGAGATAGAT
GCCGTCAAAGAGAAGGCGCGTCCGCTTTTAAAACGCGCGACCGTTCATGA
TCCGAAAACGGGTGAATTGGTTTTCGCAGATTATCGGATTAGTAAGAGCG
CCTGGTTAAAACCGGAGATGGATCAAATAGCAAACCACGTGATCAATAAA
GTTGGTGACGTCATTAATCTCGATATGCGATACTCAGAGAGTCTGCAAGT
CCAAAATTACGGTTTAGCGGGTCAATATGAGCCACATTTTGACCATTCAA
CTGTCCGCACACCAAAACAATTCAAGGAATTGGGTGGAAACCGTATCGCT
ACTATGTTGTTATATATGAGTGAAGTTGAACGAGGAGGTGCCACCATTTT
TGTTAACACTGGCCCAGGAGTCGCCATCTGGCCGGAGAAAGGTGCCGGTG
TCTTTTGGTATAATCTATTACGTAATGGTGATGGAGATAAAAAGACAAGA
CATGCAGGCTGTCCAGTTCTTGTTGGACATAAATGGGTGTCTAACCTGTG
GATACATGAACATGGACAAGAGTTTAGAAGGCAATGCTCGCTAAATATGC
atgaataa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005173	XLOC_005173	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
prolyl 4-hydroxylase	TCONS_00009213-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009213-exon-sc0000091-1491911889:573187..573877	TCONS_00009213-exon-sc0000091-1491911889:573187..573877	Clytia hemisphaerica	exon
TCONS_00009213-exon-sc0000091-1510915933:573187..573877	TCONS_00009213-exon-sc0000091-1510915933:573187..573877	Clytia hemisphaerica	exon
TCONS_00009213-exon-sc0000091-1575043694:573187..573877	TCONS_00009213-exon-sc0000091-1575043694:573187..573877	Clytia hemisphaerica	exon
TCONS_00009213-exon-sc0000091-1491911889:578643..580885	TCONS_00009213-exon-sc0000091-1491911889:578643..580885	Clytia hemisphaerica	exon
TCONS_00009213-exon-sc0000091-1510915933:578643..580885	TCONS_00009213-exon-sc0000091-1510915933:578643..580885	Clytia hemisphaerica	exon
TCONS_00009213-exon-sc0000091-1575043694:578643..580885	TCONS_00009213-exon-sc0000091-1575043694:578643..580885	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:573187..580885 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135324	0.118159	0.150619	0.189218	7.75354	8.01882	11.805	13.1113	5.18276	1.07515	10.6714	9.27645	8.55629	6.14956	5.82085	12.6365	11.7855	9.90573	0.448718	0.111185	7.25769	7.45365	3.37325	3.73453	2.86971	3.03271	1.32212	0.185536	0.0320619	0.0351134

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006620	Pro_4_hyd_alph
IPR013547	Pro_4_hyd_alph_N
IPR005123	Oxoglu/Fe-dep_dioxygenase
IPR011990	TPR-like_helical_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0031418	L-ascorbic acid binding
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0004656	procollagen-proline 4-dioxygenase activity
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016491	oxidoreductase activity
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0031418	L-ascorbic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0004656	procollagen-proline 4-dioxygenase activity
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00009213 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 5.464e-104
Identity = 196/519 (37.76%), Postives = 308/519 (59.34%), Query Frame = 1

Query:  115 FFTSASDMEVLLNVEKKLSKKFLRYVXXXXXXXXXXXXXIRNIEDGWPQPGRSKAQWLSHVTNSYTILKRFSTFWPKIGDFSKSNTTKDHMLRLFSDLSRIKESLPAEEDMKGALNAVFRLQDTYDLPAADFIDGLGGDRAHK--LSVEEIFEIGFLCVGINDHYHAQQWLNEALNRFPVGIQQVGFLDRISLLEYLAWSEYHLGHLEQAVNLTAQIVHIDPTHKSAPINLELYQH------DLKASQFNPNIRKKVFRREK----DW---QTRHNNLCNGKEV-MEQEIIDKLYCEF-DNKRHPRFILKPLKVEHLYNEPGLTMYHDLLRDWEIDAVKEKARPLLKRATVHDPKTGELVFADYRISKSAWLKPEMDQIANHVINKVGDVINLDMRYSESLQVQNYGLAGQYEPHFDHSTVRTPKQFKELG-GNRIATMLLYMSEVERGGATIFVNTGPGVAIWPEKGAGVFWYNLLRNGDGDKKTRHAGCPVLVGHKWVSNLWIHEHGQEFRRQCSLN 1617
            FFTS   M  L++ EK L      Y++ EE++L++++     ++       +    ++ H  N++ ++KR +T W ++ +       KD      S+L+  ++  P +ED  GA  A+ RLQDTY+L       G      HK  L+ E+ FE+G +     D+YH + W+ +AL +   G  ++  +D++S+L+YL+++ Y  G L++A+ LT +++ +DP H+ A  NL+ +++      D+  S  +    +K   ++K    D+   + ++  LC G+ + M      KL+C + D  R+P+FIL P K E  +++P +  +HD++ D EI+ VK+ A+P L+RAT+ +P TG+L    YRISKSAWL    + + + +  ++ D+  LD+  +E LQV NYG+ GQYEPHFD +    P  FKELG GNRIAT L YMS+V  GGAT+F     G ++WP+KG  VFWYNL  +G+GD  TRHA CPVLVG+KWVSN W+HE GQEFRR C+L+
Sbjct:   21 FFTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLDRLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENL----VLKDMSDGFISNLTIQRQYFPNDEDQVGAAKALLRLQDTYNLDTDTISKGNLPGVKHKSFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKKKGVAVDYLPERQKYEMLCRGEGIKMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEV--GASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTLS 531

The following BLAST results are available for this feature:

BLAST of TCONS_00009213 vs. Swiss-Prot (Human)

BLAST of TCONS_00009213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
P4HA1	5.464e-104	37.76	Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie...	[more]

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TCONS_00009213 (transcript) - C. hemisphaerica