|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011777 ID=TCONS_00011777|Name=TCONS_00011777|organism=Clytia hemisphaerica|type=transcript|length=2535bp CGAAAAAgggaaatttattttcagtcaCAAAATGACAGTAGAAAGTTGTT GTTGTGTAAAGCCGTATGAAATTTAGAGGTTCGTAAATTCCATAACATTC GGATTTGGTCGATTAACATAACCTCTGAATTATCTCTTCAACGGTATAAA ATTTGTGATGTGAAATACTTTTCGCTCTGATTTTCGTAAATGCTTATATC TCAGCGTGAACATTTAAAATGCGCGATTATCCAGATCATCTCCTCGATAC TATGAATATGATCTAATTCTCGACTTAGAGAAAGCTGTGTGAATGTTGGT AATACAACTTTTCTTGGTAGGAGCAACAATTATCAACTCATTTCGCTTTG GAAATATAACTTGAATCTTCTTGAAAGTTGAAAGTTATTCAATGAAGTAG GGAAAAAGTAGAGTTTAGAGTAAACATCGAGAAGAATCTCAGATAACTAT GATAACATTTAGTGGTGTTTACTTTTAGCTTGTAATGTTTGACAGAATAT ACATACAAACAATCATTAAAGAAACATTATAGTATAAAGGTATCAAAAAT GATTGGTGGTAGATTTGGAACAACAAAGTGACATGGAACTGCTTACCGGC ATACTCATAGGAGTGGGTGTAGTTTTAGGTTTTCTCCTAATTGTCTTTGT CTATGCTGTCCGAAAATATCTTTTGGTTCGGACAACCCGTTTCACACTAC TAACCGAGGAAAAGGAGACTGAAGATTTCAAGAAGTTCAAAGGAGGCTCA GAAAGTGGTTTTGAGGTTCCCTATTATACGCGTCCTGTGAGAAGACAAGT TCCAAATTTCGGTTTGAGAGAAGGTCCTTTAAATGAGAAGCGAAAAAAGT CCTCAGTCACCGTCTTAGACACACAAAGTTTCCATTCCGGACATACCATA GGAGGTCGGCGTAAGAAGAACTCCAGGGTGTCACACAGTTCCATAGGGGA CAAAGAGAACCAGCTGGTGGAATCAACCCTTCCTGCTGACATCCACGGAG ATCATGACGTGTTTGCGGAGGCAGCACCCAAATTTGATAAAACACAACGG AGGATCAGTACGGCCGTGATCAATGTTTTAGCGCTACAGGGTAAACAAGC ACCACCGTCATCAAGAGTTTCAATCACAGAAGATATGTTTATAAGAGATT TGGAAATTAACAACGATACCTTTCTCAACGTTGACAGAAACAGCAATGAT GGATCTAGTGTCCATTCCCTTCCCGATGTCGTTGATTGCCCTAGCGTTGG CACTGGCGTCAAAAGACGCGTTGTAGATCGCCGACAATGTGGATCCGATA ACACGCCTTTAAAACGAACGTATAAGAAGTCAGGGAAAATTAAATTCACG ACCAGATATTTTCACGAAGATAATATGCTAGAATTACACATTCATAAAGC GTACGATTTGAAGTTGAGAAAAGAGCAAATCAACCCTACTTGCTTTGTCC GAGTATACTTAGTACCTGGTAAAcgacaaagaaaagaaacacaATCTGCC AGAGGGCTTGAACCGTTTTTTAACGAGAAAATACAATTCGTAGATTTAGA GGAACGCAATTTGATAAAATACCGAATCAAGATGAAAGTATATAATAAGG AACGattgaaaaagaaagagctTTTAGGAGAAGTTGGAATTGCTTTGAAT TCCATCGACATCAATCTGAAAGAAACATTCACACCTGATCTCTTCTTACA ACGATCTGAGAGTTCGTTAGCATCAGTGAGCATATTGTTGTGTCACCAAG CCACATATAACAAATTGGAAGTTACCGTTCAAAAGGCTTGTAACTTGCCA CGAATTGGGATGGGCGGACAACCAAGTACATACGCCACCGTTCAACTTTT TAAAGAAGATTCAGTAGACAAAAAAGACATCGTGGTCAAGCGAAACAGCC GTGATCCCGTCTTTAAAGAAATGGTGGAATTTGACGTAAACATAGACGCT AATTGTCCTTTATCACGTTACTCGCTCGTTATCTCCTTAATACACAAGGC AGGGATCGTAGGGAGAGATGAGATTCTAGGTCACGTGATATTCAGTATTT CGTCACCACAAAAGAGTGCAGCGGAACATTGGAAGTTCATTTGCGACACT CCGCATCAGCATTTGGAACAAAGTCATTCGTTGGTTGACCCTGATGAATT GTTAAACTCAAATGAGTCTTCATCAACGTGAGAGAGTGTTAATTATTCAG GGGAGGATGTTGATTGGCCGGTTTCACAACACGAGTGCATGGTCAGAGTC TTAGAAAGGAACACAAATGGTCATGACATGAGATATACGTCTGAGTATGA AACAGTTTTCGGTAGTTAGTACATACTCAAAATTCTGGTTCATTGATAAA CATTTAAGAAGCTAATGGTTTACAACCCGATATAAAGTTGCATGGAATAA TGGGAACATACAGTTAGTGAACATTGTCAATATTTTGAAACTTCTTTGAt tatcaaatttcttttaaatgatagattttataaatttcaaaacagaaaca tattaccattttgcatttCATACCCTTCTATCAGG Run BLAST on NCBI transcript from alignment at sc0000132:250925..257056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011777 ID=TCONS_00011777|Name=TCONS_00011777|organism=Clytia hemisphaerica|type=transcript|length=6132bp|location=Sequence derived from alignment at sc0000132:250925..257056- (Clytia hemisphaerica) CGAAAAAGGGAAATTTATTTTCAGTCACAAAATGACAGTAGAAAGTTGTT
GTTGTGTAAAGCCGTATGAAATTTAGAGGTTCGTAAATTCCATAACATTC
GGATTTGGTCGATTAACATAACCTCTGAATTATCTCTTCAACGGTATAAA
ATTTGTGATGTGAAATACTTTTCGCTCTGATTTTCGTAAATGCTTATATC
TCAGCGTGAACATTTAAAATGCGCGATTATCCAGATCATCTCCTCGATAC
TATGAATATGATCTAATTCTCGACTTAGAGAAAGCTGTGTGAATGTTGGT
AATACAACTTTTCTTGGTAGGAGCAACAATTATCAACTCATTTCGCTTTG
GAAATATAACTTGAATCTTCTTGAAAGTTGAAAGTTATTCAATGAAGTAG
GGAAAAAGTAGAGTTTAGAGTAAACATCGAGAAGAATCTCAGATAACTAT
GATAACATTTAGTGGTGTTTACTTTTAGCTTGTAATGTTTGACAGAATAT
ACATACAAACAATCATTAAAGAAACATTATAGTATAAAGGTATCAAAAAT
GATTGGTGGTAGATTTGGAACAACAAAGTGACATGGAACTGCTTACCGGT
ACGTAAGAAATATTGGTGATTTTTCAAGTTTGAAGCATTATCAATAATTT
TCTCGAAAGCGATATTGAAAATACTTTTTAGTCGATTTTTGAACCTGACT
CAAGAAAGAATCAAGGTTAAAAAACCCTAATTGTTTTTCGAGACATTGTG
GGTGGTTCAAGTGGTCTTGTTGGATTTAGTGCTTAGAACATTTCTTTCTC
GTCCTAAAACTTATATTTATAAAAGTTTAACAGTTTTAAACTCTGAGTCC
GAACAATATTTCGTTTTAAAACTAAGGTCTTATCATTACGGGTAATGCTA
AAAGAAATTATTGGACGATAAGGAAGTCCTTAAGTAGGAATTCGGTATTT
GTTTTGATCTTTCGCCATTAACCTCATACAAATAGCGAATGAATATAATT
AACAACCACTTAAAGATATTTTAAAGACTTCCAGAATCATAAGCGTTTTC
CTGATTGATGAATTTAATCTCTGCTTTTTGCAAAAGTTTTACATTAAATT
GCATCATTAGGAGCTGGTAAATCTTTTTGTGTTCCCTTGAACGCGGAAAG
TACTTAGAAATCGTTAAAAATCGCTTTTCTGTCAATTTTGCGGTAAATGA
CATCTAATCAATACGATAATTATTAGCACCTATACATATTCACAATAATC
AATCTGTTATTGAAAAATTAAAATGTACACATTTCAATAGTAAGGATATA
CAGGGATTGATTACCTCAAGTATATCCAACTTTTCATGCCAGAAATTTCC
TCCAGTAGTCCATTAGGTAGAGTAAACGATACCTTTGGTTGAGACATACA
AATTAAATTTGTGTTTTCCAAAAGAATGGTCTAGGAAAGCACACAATTAA
GCTACCCCCGATCCGTCTAGCAAATGGAATTCCCAAGAAAGATGAAGTTG
TATTTAAATCAACGCCTCAACAACCGCAACGTCATCGAAATAGCGGATTT
TTAGGGATTTTCTTAAATTTTACGAGATGAAGGCATTTTGTATCATTTTA
CAGGGCTGATCCAAGACAACATGATGAATACGCGTCGTTTGAGCACAAAT
ATGATATGTTTATATGGAAAAAGTTTATACTGTTTTGAAAAAACTGAAAT
AGAGTGTCTTACGGTCCTTGAGGCTATATAAAATATATCTCCTCTTCTTT
CAGGCATACTCATAGGAGTGGGTGTAGTTTTAGGTTTTCTCCTAATTGTC
TTTGTCTATGCTGTCCGAAAATATCTTTTGGTTCGGACAACCCGTTTCAC
ACTACTAACCGAGGAAAAGGAGACTGAAGATTTCAAGAAGTTCAAAGGAG
GCTCAGAAAGTGGTTTTGAGGTTCCCTATTATACGCGTCCTGTGAGAAGA
CAAGTTCCAAATTTCGGTTTGAGAGAAGGTCCTTTAAATGAGGTAGGTCT
TCGAACGTGAATTTTTTATCAAGAATGTGAAACCAAGATAAAGAGCACAA
ATTACCTTTTAAATTTTTTAAATTTTGTTCTTTGTGCCGCTGTGAATATG
GCTAAGCACGCCATCGCAATCCTAAGAAACCTCTTATTGACCGAGAATTG
GAGATCAGAAAGAACATTATATCACTAGCTTTACTTCTGAGATACGATGA
TAGAGTAATCCAGCTCTCCATTCTCCTATAACCTCAAGCAAACTTACTCT
GGCATGTGTTTCATATTCAAAATGCAAGAAAACTCCTAACCAAGAAAACA
TGGTCATTATTCATGTCTTTGAGTCAATTTTCTTCTCAGAAGCGAAAAAA
GTCCTCAGTCACCGTCTTAGACACACAAAGTTTCCATTCCGGACATACCA
TAGGAGGTCGGCGTAAGAAGAACTCCAGGGTGTCACACAGTTCCATAGGG
GACAAAGAGAACCAGCTGGTGGAATCAACCCTTCCTGCTGACATCCACGG
AGATCATGACGTGTTTGCGGAGGCAGCACCCAAATTTGATAAAACACAAC
GGAGGATCAGTACGGCCGTGATCAATGTTTTAGCGCTACAGGGTAAACAA
GGTAGGGCATTAATTCTTCTTCTTCTATTTTACAATGTCGTACTAATTAA
TCAACATAAATTTGAGTTAAGTACTTAGCTCAAGCCTAAACTGAACATCT
AAAAACTAATCAAGAAAAGCTTGAGGTCTCTTTAAAAAAGTTTGATTCTC
TGAAAGGAAAGGAAACATAGACATCTTTAAATATCTTCAACCGGAAAGAT
CAAGAATTATCATTTAAAACAAAACAAATTTTCCACATCTTTANTCTCTG
AAAGGAAAGGAAACATAGACATCTTTAAATATCTTCAACCGGAAAGATCA
AGAATTATCATTTAAAACAAAACAAATTTTCCACATTTTTACAGCACCAC
CGTCATCAAGAGTTTCAATCACAGAAGATATGTTTATAAGAGATTTGGAA
ATTAACAACGATACCTTTCTCAACGTTGACAGAAACAGCAATGATGGATC
TAGTGTCCATTCCCTTCCCGATGTCGTTGATTGCCCTAGCGTTGGCACTG
GCGTCAAAAGACGCGTTGTAGATCGCCGACAATGTGGATCCGATAACACG
CCTTTAAAACGAACGTATAAGAAGTCAGGGAAAATTAAATTCACGACCAG
ATATTTTCACGAAGATAATATGCTAGAATTACACATTCATAAAGCGTACG
ATTTGAAGTTGAGAAAAGAGCAAATCAACCCTACTTGCTTTGTCCGAGTA
TACTTAGTACCTGGTAAACGACAAAGAAAAGAAACACAATCTGCCAGAGG
GCTTGAACCGTTTTTTAACGAGAAAATACAATTCGTAGATTTAGAGGAAC
GCAATTTGATAAAATACCGAATCAAGATGAAAGTATATAATAAGGAACGA
TTGAAAAAGAAAGAGCTTTTAGGAGAAGTTGGAATTGCTTTGAATTCCAT
CGACATCAATCTGAAAGAAACATTCACACCTGATCTCTTCTTACAACGAT
CTGAGGTAAATAAAATCACAATCATCATCTGTAATGCTCAAGGCTGTATG
TTAGTGATGTAAGAATGAATAATATAGAGTTTTAGCTAAAAATCTTCAAT
ATCTACTTACTGAAGATTGTGGCAAACACCTCTTTCCTCAATTAATGTTA
TTGGTTTGAAGGCTTCTTTCAGAACTGGATGACATTGATAAAGAGGTGAA
AGAATTGACCACAGTTTTAGTCAGAGAGATTGCAAAGTCATGATGAAATA
AACTCTGTTAAAATGATTTCAATCTATTTTGCGTTTCAGAGTTCGTTAGC
ATCAGTGAGCATATTGTTGTGTCACCAAGCCACATATAACAAATTGGAAG
TTACCGTTCAAAAGGCTTGTAACTTGCCACGAATTGGGATGGGCGGACAA
CCAAGTAAGTACTTAATCACCCCAAAACCTGCGGATGACGTAGGTCACCT
TAAGTTGACTTGTTCTTTTATCGCATTCGCCATCAACCGTTTATTATACA
TAAACAAAGTTAAAACAAATCAAAATTTAAAATCTACTAGGTCCAAAGCT
TCGTTTTCTCTCGATCATTTATCCCGATCTGTGTTTTGGAAGGGATGACA
TTACTATAACAAGTAAGATTAGAACATTAAGGTTACCAACTTACGAGTAA
CTTAACTTCTCAACCTTCATTCAAAGGTACATACGCCACCGTTCAACTTT
TTAAAGAAGATTCAGTAGACAAAAAAGACATCGTGGTCAAGCGAAACAGC
CGTGATCCCGTCTTTAAAGAAATGGTGGAATTTGACGTAAACATAGACGC
TAATTGTCCTTTATCACGTTACTCGCTCGTTATCTCCTTAATACACAAGG
CAGGGATCGTAGGGAGAGATGAGATTCTAGGTCACGTGATATTCAGTATT
TCGTCACCACAAAAGAGTGCAGCGGAACATTGGAAGTTCATTTGCGACAC
TCCGCATCAGCATTTGGAACAAAGTCATTCGTTGGTTGACCCTGATGAAT
TGTTAAACTCAAATGAGTCTTCATCAACGTGAGAGAGTGTTAATTATTCA
GGGGAGGATGTTGATTGGCCGGTTTCACAACACGAGTGCATGGTCAGAGT
CTTAGAAAGGAACACAAATGGTCATGACATGAGATATACGTCTGAGTATG
AAACNATCTGAAAGAAACATTCACACCTGATCTCTTCTTACAACGATCTG
AGGTAAATAAAATCACAATCATCATCTGTAATGCTCAAGGCTGTATGTTA
GTGATGTAAGAATGAATAATATAGAGTTTTAGCTAAAAATCTTCAATATC
TACTTACTGAAGATTGTGGCAAACACCCCTTTCCTCAATTAATGTTATTG
GTTTGAAGGCTTCTTTCAGAACTGGATGACATTGATAAAGAGGTGAAAGA
ATTGACCACAGTTTTAGTCAGAGAGATTGCAAAGTCATGATGAAATAAAC
TCTGTTAAAATGATTTCAATCTATTTTGCGTTTCAGAGTTCGTTAGCATC
AGTGAGCATATTGTTGTGTCACCAAGCCACATATAACAAATTGGAAGTTA
CCGTTCAAAAGGCGTGTAACTTGCCACGAATCGGGATGGGCGGACAACCA
AGTAAGTATTTAATCACCCAAAACCTTCGGATGACGTAGGTCACCTTAAG
TTGACTTGTCCTTTTATCGCATTCGCCATCAACCGTTTATCATACATAAA
CAAAGTTAAAACAAATCAAAATTTAAAATCTACTAGGTCCAAAGCTTCGT
TTTCTCTTGATCATTTATCCAGATTTGTGTTTTGGAAGGGATGACATTAC
TATAACAAGTAAGATTAGAACATTAAGGTTACCAACTTACGAGTAACTTA
ACTTCTCAACCTTCATTCAAAGGTACATACGCCACCGTTCAACTTTTTAA
AGAAGATTCAGTAGACAAAAAAGACATCGTGGTCAAGCGAAACAGCCGTG
ATCCCGTCTTTAAAGAAATGGTGGAATTTGACGTAAACATAGACGCTAAT
TGTCCTTTATCACGTTACTCGCTCGTTATCTCCTTAATACACAAGGCAGG
GATCGTAGGGAGAGATGAGATTCTAGGTCACGTGATATTCAGTATTTCGT
CACCACAAAAGAGTGCAGCGGAACATTGGAAGTTCATTTGCGACACTCCG
CATCAGCATTTGGAACAAAGTCATTCGTTGGTTGACCCTGATGAATTGTT
AAACTCAAATGAGTCTTCATCAACGTGAGAGAGTGTTAATTATTCAGGGG
AGGATGTTGATTGGCCGGTTTCACAACACGAGTGCATGGTCAGAGTCTTA
GAAAGGAACACAAATGGTCATGACATGAGATATACGTCTGAGTATGAAAC
AGTTTTCGGTAGTTAGTACATACTCAAAATTCTGGTTCATTGATAAACAT
TTAAGAAGCTAATGGTTTACAACCCGATATAAAGTTGCATGGAATAATGG
GAACATACAGTTAGTGAACATTGTCAATATTTTGAAACTTCTTTGATTAT
CAAATTTCTTTTAAATGATAGATTTTATAAATTTCAAAACAGAAACATAT
TACCATTTTGCATTTCATACCCTTCTATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011777-exon-sc0000132-1575043694:256459..257056 | TCONS_00011777-exon-sc0000132-1575043694:256459..257056 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1575043694:255065..255303 | TCONS_00011777-exon-sc0000132-1575043694:255065..255303 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1575043694:254456..254717 | TCONS_00011777-exon-sc0000132-1575043694:254456..254717 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1575043694:253502..254112 | TCONS_00011777-exon-sc0000132-1575043694:253502..254112 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1575043694:253103..253217 | TCONS_00011777-exon-sc0000132-1575043694:253103..253217 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1575043694:250925..251634 | TCONS_00011777-exon-sc0000132-1575043694:250925..251634 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:256459..257056 | TCONS_00011777-exon-sc0000132-1510915933:256459..257056 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:255065..255303 | TCONS_00011777-exon-sc0000132-1510915933:255065..255303 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:254456..254717 | TCONS_00011777-exon-sc0000132-1510915933:254456..254717 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:253502..254112 | TCONS_00011777-exon-sc0000132-1510915933:253502..254112 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:253103..253217 | TCONS_00011777-exon-sc0000132-1510915933:253103..253217 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1510915933:250925..251634 | TCONS_00011777-exon-sc0000132-1510915933:250925..251634 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:256459..257056 | TCONS_00011777-exon-sc0000132-1491911889:256459..257056 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:255065..255303 | TCONS_00011777-exon-sc0000132-1491911889:255065..255303 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:254456..254717 | TCONS_00011777-exon-sc0000132-1491911889:254456..254717 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:253502..254112 | TCONS_00011777-exon-sc0000132-1491911889:253502..254112 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:253103..253217 | TCONS_00011777-exon-sc0000132-1491911889:253103..253217 | Clytia hemisphaerica | exon |
TCONS_00011777-exon-sc0000132-1491911889:250925..251634 | TCONS_00011777-exon-sc0000132-1491911889:250925..251634 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000132 | supercontig | sc0000132:250925..257056 - |
Blast
BLAST of TCONS_00011777 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 3.838e-24 Identity = 75/270 (27.78%), Postives = 137/270 (50.74%), Query Frame = 1
Query: 1333 GKIKFTTRYFHEDNMLELHIHKAYDLKLRKEQINPTCFVRVYLVPGKRQRKETQSAR-GLEPFFNEKIQFVDLEERNLIKYRIKMKVYNXXXXXXXXXXXXVGIALNSIDINLKETFTPDLF-LQRSESSLASVSILLCHQATYNKLEVTVQKACNLPRIGMGGQPSTYATVQL-FKEDSVDKKDIVVKRNSRDPVFKEMVEFDVNIDANCPLSRYSLVISLIHKAGIVGRDEILGHVIFSISSPQKSAAEHWKFICDTPHQHLEQSHSL 2133
G+I+F+ Y +++ L + I KA +L + FV++YL+P K+ + ET+ R L P +NE F +++ + ++V + +R + + +GEV I LN +D+ +TF DL S + + LC+ + N + V + KA NL + +GG Y V L +K+ V+KK V + + +P+F E FD+ + L +++I+++ K + R++++G + S S +HWK + P Q + Q H L
Sbjct: 137 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEK---LRETTIIITVMDKDKL-SRNDVIGKIYLSWKS-GPGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
|