TCONS_00000178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000178
Unique NameTCONS_00000178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000178 ID=TCONS_00000178|Name=TCONS_00000178|organism=Clytia hemisphaerica|type=transcript|length=3432bp
cgggtagctcagtcggtagagcattcgcttGAATGCTCGGTtgtgggttc
gattcccggtcaccgccaactcagcggatgagtagcttagattgggcaAT
CTGATCTaagcggtaagttactgggagctgaaaGTAGGTATgacgctcca
cctcagcattcgatctctcaggtctagcgcaaatagaaaaggggatagac
tccctcactcccggctccgccgacagccaccagataaatatacttactta
caagatattaaaaacattttaacgcTAAATTGTTTAGcaaaatggacaaa
atactcaaaaaatgttttataatGATTTATTCTGATATCTGTTTCAGggt
tagaaaaaaatcaaaacaatgaaaagacCATGGTACACAATGTCTAACCC
TTTAGAGCAGTAACGTGACGTAATGGTGAGACTGTGACGTCACACCAATA
TAATCAGTCAGGCATGAATAAGGATGACTGGAGgTATTCAGTACCACGAA
ACAAAATATTCAGCAATCAGTAATAAAATTGAAGaCCCTGGAGGTGTCAA
CCAGCTCGGCGGCGTATTTGTCAATGGCCGCCCATTACCCGATTATATGC
GCCATCGCATTATCGAACTCGCACAATGTGGTGTCCGCCCTTCCGAGATT
TCACGCCAACTACTTGTTTCCCACGGATGTGTCAGTAAAATATTGGGGCG
ATATTATGAAACCGGATCTGTCCGCCCGGGTGCGATTGGCGGCAGTAAAC
CGAAAGTCGCAACGCCTAAAGTTGTTCATCGAATTGTTAAACTTAAAGAA
GAGAACCCGTGCATGTTTGCGTGGGAAATAAGGAACTCATTATTAGCGGA
AGGTATATGTGACAACGGGAACGTGCCTTCCGTGAGTTCTATAAATAGAA
TATTACGTAATCACGCAGCCGAAAAAGAGACTAAGGAAGCAAAAATGAAA
CAAGAAGagcttcaaaaacaaaacggtTTCGGAATGcttaataatttcaa
tttcggTAATTTCGCTACCGCACCTTTTAATGGACTTAATACGATAACGG
GGACTCAAGACGCCGCTACAAATGCGGCCGCGGCTAACGCCGCTTATAGC
CAGTTTCCGTTTTTTAATACGTCATTTCCGATTCTAACGGGCCCTCTTCA
ACAGCAAACTACCGCACAACAGTTATTGTCTTTACCGTTAAATCAAATGT
CGCCGGAACGCAAATTTAAGACGCCGACAAATGACGGAGTGTCGTATCAA
ACAATAGACGACACAACCGGGAATCCCTTCCACGACCATTTACAAGGTTC
CGTTGTTACGTCAGCTGCCATAAGCGATTACGCACAAGTTCTGAGTGAAG
AGTCACTACGGTCGACCGGGGAACCGGACCTACATACCGGACACGCCCAA
CATCAACAACAACATCAAGTGAAGGATATATCACCGAACTCTTCAGTGTT
AGTTGATGACCATCATCATCACAGGAATGACCTATTGTTATCCAAAGAAG
ACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAATCAACTCGGA
GCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATGTCGACCCTAC
CGGCCTCTNCTTATCCAACACTTAGAGCAGGCAAGTAACCAACTCGGAGC
AGCTAACCACCAAGATGGACCCTCCAATCTCACCCATGTCGACCCTACCG
GCCTCGTAGCGCCGCATCAACATCAACAACAAACACACAGAAAGAAAAGA
TCGTTAGAAATATCACCGACAAAGTCAGACTCCAGTAAAGAGGAGaataa
taatttgaagccaGGAAATTCTTTGATGAGTGAACAAATGAGTCCTGATA
TGAAAAGACGACGATTTGCAAGTGAAAGTCCTGTTTCATCTGACATGTTG
ACACAGAAGATTTCACCCACATGGTATAAATATGGCGCAATGTTCCCTGG
CAACGGTAACCTAGTCAACGTAAACAACATGAACGCACTTAATCAAATCA
ACAATTCACTCGGTGCCNTGGCAACGGTAACCTAGTCAACGTAAACAACA
TGAACGCACTTAATCAAATCAACAATTCACTTGGTGCCTTCAATAATCTT
GGACAATTTTCAAATAATGTTAACGGGATTAACGGATTAACGACTCTAAA
CGCATATGCTAACAACGTAGCCGCCCTTAACGCCATGACGTCGATGGCGG
TGAACGGGAATACGCTAAATGGGTTGAATTTACAGAACTTGAATAATCAA
GGCGTGACCGGTTTTACGCCCACCTTTGATGGCGAACGGTCGCTTGGTAA
TAGTTTGAATAATATATCGAATAATGATTTCGGTGGATGGCCGAATAATT
TTGTCGGGATTTTATCGGATTCGCCGTCGTCTTATCAACAAAATGGCGGC
AATATTGGGTCTGGGAAtaattcaaatcaaatcaatccCTCGTTTGGATT
GAATATGTCCTTCACGCCCACGTCGAAAAATTTAATACAAGGACTTACGA
ATTCTACGTCGCCGACAAGTGCTTTGTCGAATTTGTTACCAGGGcaacaa
aacttttttatacAAAACAGTCCGCAAATGAGTGGAACGGGAAATGGTAG
CGGAGTAGCGAATGTAAATCAAAATGGTGGTGGCGGTTACCAACAACAAC
AAACGCAACAACAAGAtgttttaagtttaaaaatgaTGTCATCGCCAAGT
TTGCTTATGCGAAATACGAATGTTAATGTCGGCAACTAAAAACCGAGAAA
CGACGGGTGTTTCTCTTGAATTATAATAAGAGTTGACCCTTTTTAGACTG
CGATTTACGTTTTGTGTATTTTTATACAAGATTGTGTTATGCTTTCGCGT
AAAAGAAAGCTTGTGTGAAGTTTTTTTCGTTTGTTTATGTACTtcaatgt
aaacaattttgaatCTTCGTTTTTTTTACCGAGTGACCATTGTTGTGTGT
TAAAGTCCATTTTTGTTTGTCTAAAGGCTGGTCTCCGCTTGTGCgtcttc
cacgctattggtcaaaggaaaaatgaaacaattccattggcgcgatctga
cgtaacgttccaaaaaagttgaaatgtagtcaactttcttttcaagcgcg
cactacatttttatgacgtaatcttttttacaagcaaaattgattgaagc
caaaaggtacaatcgcagcgcgcgcaagcaGAGACCGCCTTAAGGGATTC
GTAATCGTATAGTGTCGGAAAACTACTAGATGGTTTTTAATGTTGTGATA
AATTGTGTTTTGCGGTATCTGTATTGTTGAGCATGACTGACATTAGAAAC
ATAGAAAGAATATAAATTCtatatttttgtacatttttgaagacttttat
caaaatattagtaaaaatatatacacCAGTTTTACTTTCATAACATTTAT
ATACAGCATAAGAGAAAATTTCTTGAACTTAA
Run BLAST on NCBI

protein sequence of TCONS_00000178-protein

>TCONS_00000178-protein ID=TCONS_00000178-protein|Name=TCONS_00000178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MTGGIQYHETKYSAISNKIEDPGGVNQLGGVFVNGRPLPDYMRHRIIELA
QCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKV
VHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILRNHAAE
KETKEAKMKQEELQKQNGFGMLNNFNFGNFATAPFNGLNTITGTQDAATN
AAAANAAYSQFPFFNTSFPILTGPLQQQTTAQQLLSLPLNQMSPERKFKT
PTNDGVSYQTIDDTTGNPFHDHLQGSVVTSAAISDYAQVLSEESLRSTGE
PDLHTGHAQHQQQHQVKDISPNSSVLVDDHHHHRNDLLLSKEDHTKLIQH
LEQGSNQLGAANHQDGPSNLTHVDPTGLXLSNT
Run BLAST on NCBI

transcript from alignment at sc0000001:816700..827225-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000178 ID=TCONS_00000178|Name=TCONS_00000178|organism=Clytia hemisphaerica|type=transcript|length=10526bp|location=Sequence derived from alignment at sc0000001:816700..827225- (Clytia hemisphaerica)
CGGGTAGCTCAGTCGGTAGAGCATTCGCTTGAATGCTCGGTTGTGGGTTC
GATTCCCGGTCACCGCCAACTCAGCGGATGAGTAGCTTAGATTGGGCAAT
CTGATCTAAGCGGTAAGTTACTGGGAGCTGAAAGTAGGTATGACGCTCCA
CCTCAGCATTCGATCTCTCAGGTCTAGCGCAAATAGAAAAGGGGATAGAC
TCCCTCACTCCCGGCTCCGCCGACAGCCACCAGATAAATATACTTACTTA
CAAGATATTAAAAACATTTTAACGCTAAATTGTTTAGCAAAATGGACAAA
ATACTCAAAAAATGTTTTATAATGATTTATTCTGATATCTGTTTCAGGGT
TAGAAAAAAATCAAAACAATGAAAAGACCATGGTACACAATGTCTAACCC
TTTAGAGCAGTAACGTGACGTAATGGTGAGACTGTGACGTCACACCAATA
TAATCAGTCAGGCATGAATAAGGATGACTGGAGGTATGGGGAAGAATCAT
AATTTCATCAAGCTCTGAAATAAACAATTTCATAGAAACAGTTCGCTCTC
TCTAATTCGAGCTTCTTTTATTCGAATAATTCTGTAATTCGATCTAGATG
GTCGGTTCTACCTAGAGAATGGTATAAAATACTCTCTGTAATTCGAATCT
TTCTCTAATTCGAAGAAGATTCTTCGCCACTTGGAAATCGAATAAGAGAC
TGTAGACTGTATTTTAAATAATATTTGGTGAAAAAATTTGGCTTGGTAAA
ATTTGACAACGATGTCAACGTCACCTAGTTCTGGTCGCATTAGGCTCTTC
CAAAAAAAAATTTGAATATGGGAGGTGGAGGATATAACATTTTTTGGTAA
TCTATTCCCCGGATATTGTGAATTTTGACCCCCGGACAACGGATCTCACC
CCCGGACAAACATCAGTTGACATTCAGAATCTAATGGAGCAAGTTTGCCC
CAAAAACGAGGCAAATTTTGCAAATTTTTCACTACTTAAAACCCACAATA
AAAAGTGGTACCCTCTATCTCATTGTTTAGTTGGAGTGTAAGGCTGAAAC
TTTTTGTGTTGAAAGTACGTTGTCTATGATTGTCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAAAAAGT
TCTTTTGACCTCAAATTTTGAACAGTGATTCACTGTAAAGTTACTAATGT
TATGAATATACCATTAGTACCTAAATGATCTCAAAAATATGTGTTCAAAT
CAAAATACCCCTTAAAACCTACAAAAATAAGGCTAAAAACCACAAAGTCC
GACCCTTGCTAACGGGATACTTAAGCTGATGGATACAAATTTGGTGTTGC
TTCGTGATTCAATGGTTCAAAGACTCGCTAGAAATTCATTCCCACAACAA
TATTTTCAGGATTTCATGCCCATAATGCAATTGTGTGTGGTTTTTTCGTC
AAAAACGGCTACGAAAGGCCAAAACCTTCATTCGCTTCATTTTTGTCCTA
TGGTTCTAATGTTTTTCTAAATCTCCATCAAATTTGTGACATTTTGGTAT
GCAACATGACCAGGTTTTGAGAAAGTCGAATTTCAGATTTTATTGATCAT
CACCATAAAAGTGCTTTAAAGTAGAATTTTAAGGGCCTGTCATTTTCGTT
GGGGTCTATTCACGAAGATGAAAATGATTTTTTCATACCTACCATAAGTA
TAGGTATCTAAAAAGTATAGGTTTTATGACCTTAAATTCAATTGTGTAAT
TTCTAGGTCCAAAAAACTTGATTTTTTGAAGGGATTTTTGATAGAATTTT
AAATAACTTCGAATTTTAAGATACTTTAGCATGTTTAAATTTTTAAAATT
TGGTATTTTATGAAAGAACATTTATAAGAGGTTGTAAAAAAGTGAAACAT
ACCACATAAAATTAAATCTGGTAGTTATGAAAGCCAAAAATGCAACATTG
TGGGTTTTAAGAGGTATGTGGTTTTAAGGGGTATCCACTGGTAACTTTTA
AACAATAAATTTTAACATCAAATTTTTGTGTTAACAGCGTTTTGGTTTTG
ATAATTTTCAGGAAAAAATAAACGATCCTTGGTTGTCTCAGCTACCGAAA
TTTCTTTTGTGTGGGTCTAATTTTTAATAAAAATTTACATTGCTAAAAAC
GCTGGATCTAATTTAACATTTTTTTGTTTGTTTTTAGGTATTCAGTACCA
CGAAACAAAATATTCAGCAATCAGTAATAAAATTGAAGGTAAGCTCAAAT
TTTCACCTGTCCTTAATATGTTTTTCTTTGTTGGGGGCGGTTTGGCGGGC
GGTTCTCTTTTATCATATTTTCGTTTCACTCGACTGTTCTTCATCTTTTA
GCACTTTTAGTCTCAGATTGTTCTTATCCCACTCTTGCACAAAAATAGAG
AAAAAGTACTGTAGTGCAAAAAAGAACATTTTTGGATGTTCTTGTAAAAA
CGTATAATTTGGGGTTCAGATTAACTCAAGATTTTTTCACATTTTTAAAG
GAAAGTTAATTGGAAGATAATTAAGTAAATATTGAATAATTGAGATAATT
TTAGCAATTAAATGCCGTGTTAAATAAAAAGTAGTTATCAATTATCAAAG
AAGGAAACCGCAAAATAGAACAAGTGTCAGAGACAATTATCTCACAATCC
AGCTGCCTGGAATTTCAATGAAAGAAAACACCATAGTTTGCGTTGAAAAT
GTTGTAATTTTTGTACGAACAAGCGAGGCTCAGCCTTGATTGCCCAAACA
AAAAAAAAAAAGTTTTATACTGAAACTTTCTGGGCATTCGAGGCATCTGT
TTACAAAACACCAAAGTGTGTAAAATAGACTCATTTGTAAACTTTCCCCC
CTGATTTTCATACAGAAAACTATATTTCCAGGGGGTTTGGCTACTGCTAA
TGGCATGTTTATATGAGGCAATGCGTAATAAGGGTTTTTCGGAATTGATT
TTTTCATATTTTTGTGAACCATTCATTTTTCTTTATGTGGAACTTTTAGA
GTTTGTGCATGTGAGAGTTGTAGAAATTTGTTTGGCGAAAATTTTAAATT
TTTCTTAAAAATGGTCTATAGTTTGCGATCGAGAACTGATGAAACAACTT
TCGAGCAACAAAATATTACGACAAATAACGATGCTTATAATATTTATAAC
GACTGTAGTTACGAGAATGAAAATTACGACAACGAGAGTGAAATTTACGA
TGACAATAACAATAATCGGTGTGAATCTCCAACTTACGAGAATGGATACA
TGTTCCGTAAACAACCATTAACGACAACTTACGACAATTTTACGACCAAT
CTACCAACTGGTATTATTAAACCGATCCCTGTCACTCGTAAGCCCGAAAT
CGAAACGAGTATCGAGAAACCGACGACAAGATTTCGAGCAAGGATTCACA
GTGTCGATGATATACTTGATCTATCACCGAAACTTAAAACACCGACAGAT
TCGGTAACTTTCGTTTTCAATAACGGTCAGTCTAACACCGTCTTTAAGGA
GAAAACTCGCAACCGTAAAAAAGTCGTAACTCGAGTTCCACGTGTGACAC
GACGACAAACGACGACAGCTTTTGTTAAGCCACGACAATCGAAACGAATT
TCTCCCAACAAAGACGATGAAGGTAAATGACTAAATTCGTTTTTTTATAA
GAACAAACTATATAAGAACATTAATTCTCGATGGCTGATATCAAGAATCA
AAAAAATCAAAAAATTTTCTTCTAAGCAATGAAGGCCTATACTAATATTA
GCCCTGTTTAAGATTTGGTGAAAAGATTAATCTCATTTTTACATACAATA
CACTGGTTTAGCTTTAATTGACATCTGATCGATGTTGAGCATGAAACGGT
TCTAATCTAATCAACATTTTTGAGATTTTGAGAGGATGTTTCTTATTGTG
AAGATTGAAAATAAGTTATACTTTTTTGATTAATTTTGTAATAAACTTTG
CTGAGTGATGGGCTAGAGAGCATGAGCTCTAAGCATGAGGCCCTCAGCAG
TTGGCATGATGGCGTTCTGTGATTTCAAAAAGCATGACACGTGATTGAGT
ATAAGAATTATTTTGTTTTGGATGATGGAGAAAAATTTCGGTGTGATCGT
CTGGTTGTCGTGATGACGTGATCATAGCTTGTGTCTGACTTTTTTAGGCC
TAAAATAAGCACTCTCATAAATCAGTCAAACTCTCCCTCTTCAAACAAAT
AATTTACGTTCTTTGTGTTCCAGTTACTTGAAGAGGTTTTTCAGGGTTTT
TCCAACGTTTGAAATTAAAGAGGCGATACCTTCGAAAGTTTACTTCCATT
ATGGCGTAAGTTACGTAACTTAGTCAACTAGAAAGACATCTTTACTTCAT
CTTTATTTTGAGTATATTAAACAAATTCTGAGTACGGAGAAGCCTGGGTC
CTAGTCAGAAAATCTGCCGTATACTATCTTCGCTTTCTGGTGTGAATGAT
GGCACTACTTCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTTTCCCCCCCCC
CCATCAGAATTTTTAAAGGCAAAAAGTAGTTGAACTCTAGCTTCTGGACT
ACCTCGGTTCTGGTTTTCTTAGTGAAAAAAACCTGCACACAAATTTAAAA
GAAATCGTATGAATGACTTACCTTGCTGATTTAATCTATGAATTTGTGTT
GTCGGTTCGACATTCTGTGTTCCTCGTTGTCGATTCCCTGTAAAGAAAAA
CAAAATAATTAGAGTCGAATCTTTATACCTTATCGGCCCTATTTACGCCG
GCCCTTATTGGCGTTATTTTTTGGCACGTGGCGTAATAAGAGCTGGCGTA
AAAAGGGCCAAGATTTTTCAATTTTTAGCTAAAAGTGGCGTTAATCTTCG
ATCATCATTTTTCAACTTAAAGGATTTTAGGTATGATTCGAAGACAAAAA
TTATCCATTGTTTTACTCCATATCTAAACCAGTGATTTTGAATGGAATTT
TCAATAATTTACTACCGAAACATGATATTTCAATATAAATTTTAAACATT
ATTCAGCATTATTTACTAATTTGAAGCATTAGTAGCCATTTTTACAAATT
TTGGCGTTATTAACGGTCCTGATTGGCGTAAGGCCAAAATTGGCCTCTGG
CGGAATAAGGGCCGACGTAAAAGGGGCCGGCGTTAAGTTAGGGCCGACGT
AAAAATGGCCGATAAGGTAACTCCAACACGTACGGAAAACTCTTAATTTG
TTTAAGTTATAGAAATTTCGAGTTAGGGAGTAAGTTTTATAAGGTATTGT
TAATTGAAGGGACAAGAAAAATTGAGATGAGTAAATCAAATGGGATGTCT
GATTTGTTATTGAGCTTCTTTTAATTTTCCACATTGTACTACGCGTTTGA
CCTTTAGATTAAACAAAAATGTACGTCTAGTAGAGAGTGAGTTTCTTAGC
CACATGCTTACTGGGCCAGCGAATTTCAAAATACCTTTTTCGTAGTAAAA
GTATTCCAGAAGAAATTGACTCCTTAAAAAACTGCATTTTAAAAAGGTCG
TCCCGTTAATCACTATTGAAGTATCTCAATGATTNACTGCATTTTAAAAA
GGTCAACTCCGTTAATCACTATTGAAGTATTTCAAATGATGTTTTGTTTA
TCTTTTTAGACCCTGGAGGTGTCAACCAGCTCGGCGGCGTATTTGTCAAT
GGCCGCCCATTACCCGATTATATGCGCCATCGCATTATCGAACTCGCACA
ATGTGGTGTCCGCCCTTCCGAGATTTCACGCCAACTACTTGTTTCCCACG
GATGTGTCAGTAAAATATTGGGGCGATATTATGAAACCGGATCTGTCCGC
CCGGGTGCGATTGGCGGCAGTAAACCGAAAGTCGCAACGCCTAAAGTTGT
TCATCGAATTGTTAAACTTAAAGAAGAGAACCCGTGCATGTTTGCGTGGG
AAATAAGGAACTCATTATTAGCGGAAGGTATATGTGACAACGGGAACGTG
CCTTCCGTGAGTTCTATAAATAGAATATTACGTAATCACGCAGCCGAAAA
AGAGACTAAGGAAGCAAAAATGAAACAAGAAGAGCTTCAAAAACAAAACG
GTTTCGGAATGCTTAATAATTTCAATTTCGGTAATTTCGCTACCGCACCT
TTTAATGGACTTAATACGATAACGGGGACTCAAGACGCCGCTACAAATGC
GGCCGCGGCTAACGCCGCTTATAGCCAGTTTCCGTTTTTTAATACGTCAT
TTCCGATTCTAACGGGCCCTCTTCAACAGCAAACTACCGCACAACAGTTA
TTGTCTTTACCGTTAAATCAAATGTCGCCGGAACGCAAATTTAAGACGCC
GACAAATGACGGAGTGTCGTATCAAACAATAGACGACACAACCGGGAATC
CCTTCCACGACCATTTACAAGGTTCCGTTGTTACGTCAGCTGCCATAAGC
GATTACGCACAAGTTCTGAGTGAAGAGTCACTACGGTCGACCGGGGAACC
GGACCTACATACCGGACACGCCCAACATCAACAACAACATCAAGTGAAGG
ATATATCACCGAACTCTTCAGTGTTAGTTGATGACCATCATCATCACAGG
AATGACCTATTGTTATCCAAAGGTAATTCACAAATGAGTTTTAAATCTGT
TTTAATTCGCACGTGTTATATGCACCAAAAATCATGTAAACAAAGTTTCT
ACATTATCGTCAACATGAAAAGTATGGGCAATCTGACTGGGTCAAAACGC
GTACCATACATAAATGCTGTTTTTCATATTGTACCGTACAAATACAAGAC
TGTGTTCAAAAAAGGGGTCTGGTAAGCGAGAGATTGTATTTTGCACAATT
CTATGGTTAGAAATGTTTTCTTTTCACTTGCCGAATTCTAACGGTTCAGA
GTTCCGAGTTCGTACATAAATCGCTAAATTAAAGCACTTAAGATTAATTT
CCAGTTTTAAGATCTTGAAGAAACATTATAATAGTAAAGTCTGTCTCAAT
ATAAATTGCAGCGGAGACAAAAAAGACTATAACTTTTGATAGAATTCGAA
TTTTAGATAGCAGTTTTTTCGCTTGTTGAAAAGACAAACAGGAGTGGAAT
ATTATCATGAAGAAAAAACTTAAAAAATATCGGAAAATGAAGATTGAAAA
TTAAGAAGAAGAAAATCAACTTCTTCAATAATCGTCCTATAATTATCATT
TTTACATCAAAGAGATTTGTTCCATCGAAAGATACAGTTCAAAATTTATC
ACTGATTGACTTCAAAAACCATCAAAAACAACAAAAAAGAGCCCTTTTCA
AGTTAACCAGGGCAAAGTTTTAAGCTTTATTTTTTGACTGAATGAAAGTT
TAATGAATTTTTCTTTCGCATTTATGACGTTCTAAGATTAAAGAATTTCT
GATATAAAAATTAAGATCATAGCATTGTTTTACGAGAAGCTGAGTTCTTC
TTCATTTTTCATCTTCGTTTTTCGATCTTTTAATTTATTTATCATATTCG
AATTCTATCAAAAGTTATAGCCTTTTTTGTCTCCGCTGCAGGTTATATTG
GGACAGACTAATAATATAGAGACAGACAGAATAATATCGTATCAAATTAT
AAGAAATCTTTTAACTTTCGTGAAATATCATTCAATCATCTGCCTCTTTA
ATTTCAGAAGACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAA
TCAACTCGGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATG
TCGACCCTACCGGCCTCTNCTTATCCAACACTTAGAGCAGGCAAGTAACC
AACTCGGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACCCATGTC
GACCCTACCGGCCTCGTAGCGCCGCATCAACATCAACAACAAACACACAG
AAAGAAAAGATCGTTAGAAATATCACCGACAAAGTCAGACTCCAGTAAAG
AGGAGAATAATAATTTGAAGCCAGGAAATTCTTTGATGAGTGAACAAATG
AGTCCTGATATGAAAAGACGACGATTTGCAAGTGAAAGTCCTGTTTCATC
TGACGTAAGTGTGATATTAAATTTTATTGCTTTTGAAAGTAATTCCTGAT
AGACTCTTTTCATAAATTACGTCACGAACATCACTTGCCTTGTTTTGAAA
TTATTGCCATGCATAGCAGGCCATATTTTAGAAAGGCAAGGCAGCTTTCG
TTGGTGGCCAAAAAGGGCACTTTTTCTTATGTTTTTCCACTAAAAAGGCT
GTTTTTATCAAAATTTTAGTAATTTCAAGAGGGACAGCGTCCGATAGCCG
GACGCTTAAAGGGCATGAAAGATGGCCTGCATAGTGATTAACTCCCAGCA
GATTTTATTACGAGTTTGGTCAGAAAGGGAAACAATTTTTTGTTAGGAAA
CAATAGTGAGACACTGTCCTGGTATGAAATAAAGTATGTGTCTGATATGA
AACGGGAACATTATGTAAAAATAAAACCTTTAAAGTGGTCAACGAACCCA
CGACACTTTCTTTTACTCTCAGTCAGTTTAGTTATCGACAATCTACCTAG
AAAAGTCTGAGAAATCTTTCTTCAAAAGCACCCATGTTTTTATTTTGAAA
TTCGTAAAATCCTTTTAAAACTTTTTTCTTTACTCTAGATGTTGACACAG
AAGATTTCACCCACATGGTATAAATATGGCGCAATGTTCCCTGGCAACGG
TAACCTAGTCAACGTAAACAACATGAACGCACTTAATCAAATCAACAATT
CACTCGGTGCCNTGGCAACGGTAACCTAGTCAACGTAAACAACATGAACG
CACTTAATCAAATCAACAATTCACTTGGTGCCTTCAATAATCTTGGACAA
TTTTCAAATAATGTTAACGGGATTAACGGATTAACGACTCTAAACGCATA
TGCTAACAACGTAGCCGCCCTTAACGCCATGACGTCGATGGCGGTGAACG
GGAATACGCTAAATGGGTTGAATTTACAGAACTTGAATAATCAAGGCGTG
ACCGGTTTTACGCCCACCTTTGATGGCGAACGGTCGCTTGGTAATAGTTT
GAATAATATATCGAATAATGATTTCGGTGGATGGCCGAATAATTTTGTCG
GGATTTTATCGGATTCGCCGTCGTCTTATCAACAAAATGGCGGCAATATT
GGGTCTGGGAATAATTCAAATCAAATCAATCCCTCGTTTGGATTGAATAT
GTCCTTCACGCCCACGTCGAAAAATTTAATACAAGGACTTACGAATTCTA
CGTCGCCGACAAGTGCTTTGTCGAATTTGTTACCAGGGCAACAAAACTTT
TTTATACAAAACAGTCCGCAAATGAGTGGAACGGGAAATGGTAGCGGAGT
AGCGAATGTAAATCAAAATGGTGGTGGCGGTTACCAACAACAACAAACGC
AACAACAAGATGTTTTAAGTTTAAAAATGATGTCATCGCCAAGTTTGCTT
ATGCGAAATACGAATGTTAATGTCGGCAACTAAAAACCGAGAAACGACGG
GTGTTTCTCTTGAATTATAATAAGAGTTGACCCTTTTTAGACTGCGATTT
ACGTTTTGTGTATTTTTATACAAGATTGTGTTATGCTTTCGCGTAAAAGA
AAGCTTGTGTGAAGTTTTTTTCGTTTGTTTATGTACTTCAATGTAAACAA
TTTTGAATCTTCGTTTTTTTTACCGAGTGACCATTGTTGTGTGTTAAAGT
CCATTTTTGTTTGTCTAAAGGCTGGTCTCCGCTTGTGCGTCTTCCACGCT
ATTGGTCAAAGGAAAAATGAAACAATTCCATTGGCGCGATCTGACGTAAC
GTTCCAAAAAAGTTGAAATGTAGTCAACTTTCTTTTCAAGCGCGCACTAC
ATTTTTATGACGTAATCTTTTTTACAAGCAAAATTGATTGAAGCCAAAAG
GTACAATCGCAGCGCGCGCAAGCAGAGACCGCCTTAAGGGATTCGTAATC
GTATAGTGTCGGAAAACTACTAGATGGTTTTTAATGTTGTGATAAATTGT
GTTTTGCGGTATCTGTATTGTTGAGCATGACTGACATTAGAAACATAGAA
AGAATATAAATTCTATATTTTTGTACATTTTTGAAGACTTTTATCAAAAT
ATTAGTAAAAATATATACACCAGTTTTACTTTCATAACATTTATATACAG
CATAAGAGAAAATTTCTTGAACTTAA

Coding sequence (CDS) from alignment at sc0000001:816700..827225-

>TCONS_00000178 ID=TCONS_00000178|Name=TCONS_00000178|organism=Clytia hemisphaerica|type=CDS|length=4608bp|location=Sequence derived from alignment at sc0000001:816700..827225- (Clytia hemisphaerica)
AAGACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAATCAACTC
GGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATGTCGACCC
TACCGGCCTCTNCTTATCCAACACTTAGACCCTGGAGGTGTCAACCAGCT
CGGCGGCGTATTTGTCAATGGCCGCCCATTACCCGATTATATGCGCCATC
GCATTATCGAACTCGCACAATGTGGTGTCCGCCCTTCCGAGATTTCACGC
CAACTACTTGTTTCCCACGGATGTGTCAGTAAAATATTGGGGCGATATTA
TGAAACCGGATCTGTCCGCCCGGGTGCGATTGGCGGCAGTAAACCGAAAG
TCGCAACGCCTAAAGTTGTTCATCGAATTGTTAAACTTAAAGAAGAGAAC
CCGTGCATGTTTGCGTGGGAAATAAGGAACTCATTATTAGCGGAAGGTAT
ATGTGACAACGGGAACGTGCCTTCCGTGAGTTCTATAAATAGAATATTAC
GTAATCACGCAGCCGAAAAAGAGACTAAGGAAGCAAAAATGAAACAAGAA
GAGCTTCAAAAACAAAACGGTTTCGGAATGCTTAATAATTTCAATTTCGG
TAATTTCGCTACCGCACCTTTTAATGGACTTAATACGATAACGGGGACTC
AAGACGCCGCTACAAATGCGGCCGCGGCTAACGCCGCTTATAGCCAGTTT
CCGTTTTTTAATACGTCATTTCCGATTCTAACGGGCCCTCTTCAACAGCA
AACTACCGCACAACAGTTATTGTCTTTACCGTTAAATCAAATGTCGCCGG
AACGCAAATTTAAGACGCCGACAAATGACGGAGTGTCGTATCAAACAATA
GACGACACAACCGGGAATCCCTTCCACGACCATTTACAAGGTTCCGTTGT
TACGTCAGCTGCCATAAGCGATTACGCACAAGTTCTGAGTGAAGAGTCAC
TACGGTCGACCGGGGAACCGGACCTACATACCGGACACGCCCAACATCAA
CAACAACATCAAGTGAAGGATATATCACCGAACTCTTCAGTGTTAGTTGA
TGACCATCATCATCACAGGAATGACCTATTGTTATCCAAAGGTATTCAGT
ACCACGAAACAAAATATTCAGCAATCAGTAATAAAATTGAAGATGACTGG
AGAAGACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAATCAAC
TCGGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATGTCGAC
CCTACCGGCCTCTNCTTATCCAACACTTAGACCCTGGAGGTGTCAACCAG
CTCGGCGGCGTATTTGTCAATGGCCGCCCATTACCCGATTATATGCGCCA
TCGCATTATCGAACTCGCACAATGTGGTGTCCGCCCTTCCGAGATTTCAC
GCCAACTACTTGTTTCCCACGGATGTGTCAGTAAAATATTGGGGCGATAT
TATGAAACCGGATCTGTCCGCCCGGGTGCGATTGGCGGCAGTAAACCGAA
AGTCGCAACGCCTAAAGTTGTTCATCGAATTGTTAAACTTAAAGAAGAGA
ACCCGTGCATGTTTGCGTGGGAAATAAGGAACTCATTATTAGCGGAAGGT
ATATGTGACAACGGGAACGTGCCTTCCGTGAGTTCTATAAATAGAATATT
ACGTAATCACGCAGCCGAAAAAGAGACTAAGGAAGCAAAAATGAAACAAG
AAGAGCTTCAAAAACAAAACGGTTTCGGAATGCTTAATAATTTCAATTTC
GGTAATTTCGCTACCGCACCTTTTAATGGACTTAATACGATAACGGGGAC
TCAAGACGCCGCTACAAATGCGGCCGCGGCTAACGCCGCTTATAGCCAGT
TTCCGTTTTTTAATACGTCATTTCCGATTCTAACGGGCCCTCTTCAACAG
CAAACTACCGCACAACAGTTATTGTCTTTACCGTTAAATCAAATGTCGCC
GGAACGCAAATTTAAGACGCCGACAAATGACGGAGTGTCGTATCAAACAA
TAGACGACACAACCGGGAATCCCTTCCACGACCATTTACAAGGTTCCGTT
GTTACGTCAGCTGCCATAAGCGATTACGCACAAGTTCTGAGTGAAGAGTC
ACTACGGTCGACCGGGGAACCGGACCTACATACCGGACACGCCCAACATC
AACAACAACATCAAGTGAAGGATATATCACCGAACTCTTCAGTGTTAGTT
GATGACCATCATCATCACAGGAATGACCTATTGTTATCCAAAGGTATTCA
GTACCACGAAACAAAATATTCAGCAATCAGTAATAAAATTGAAGATGACT
GGAGAAGACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAATCA
ACTCGGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATGTCG
ACCCTACCGGCCTCTNCTTATCCAACACTTAGACCCTGGAGGTGTCAACC
AGCTCGGCGGCGTATTTGTCAATGGCCGCCCATTACCCGATTATATGCGC
CATCGCATTATCGAACTCGCACAATGTGGTGTCCGCCCTTCCGAGATTTC
ACGCCAACTACTTGTTTCCCACGGATGTGTCAGTAAAATATTGGGGCGAT
ATTATGAAACCGGATCTGTCCGCCCGGGTGCGATTGGCGGCAGTAAACCG
AAAGTCGCAACGCCTAAAGTTGTTCATCGAATTGTTAAACTTAAAGAAGA
GAACCCGTGCATGTTTGCGTGGGAAATAAGGAACTCATTATTAGCGGAAG
GTATATGTGACAACGGGAACGTGCCTTCCGTGAGTTCTATAAATAGAATA
TTACGTAATCACGCAGCCGAAAAAGAGACTAAGGAAGCAAAAATGAAACA
AGAAGAGCTTCAAAAACAAAACGGTTTCGGAATGCTTAATAATTTCAATT
TCGGTAATTTCGCTACCGCACCTTTTAATGGACTTAATACGATAACGGGG
ACTCAAGACGCCGCTACAAATGCGGCCGCGGCTAACGCCGCTTATAGCCA
GTTTCCGTTTTTTAATACGTCATTTCCGATTCTAACGGGCCCTCTTCAAC
AGCAAACTACCGCACAACAGTTATTGTCTTTACCGTTAAATCAAATGTCG
CCGGAACGCAAATTTAAGACGCCGACAAATGACGGAGTGTCGTATCAAAC
AATAGACGACACAACCGGGAATCCCTTCCACGACCATTTACAAGGTTCCG
TTGTTACGTCAGCTGCCATAAGCGATTACGCACAAGTTCTGAGTGAAGAG
TCACTACGGTCGACCGGGGAACCGGACCTACATACCGGACACGCCCAACA
TCAACAACAACATCAAGTGAAGGATATATCACCGAACTCTTCAGTGTTAG
TTGATGACCATCATCATCACAGGAATGACCTATTGTTATCCAAAGGTATT
CAGTACCACGAAACAAAATATTCAGCAATCAGTAATAAAATTGAAGATGA
CTGGAGAAGACCATACGAAACTTATCCAACACTTAGAGCAGGGAAGTAAT
CAACTCGGAGCAGCTAACCACCAAGATGGACCCTCCAATCTCACTCATGT
CGACCCTACCGGCCTCTNCTTATCCAACACTTAGACCCTGGAGGTGTCAA
CCAGCTCGGCGGCGTATTTGTCAATGGCCGCCCATTACCCGATTATATGC
GCCATCGCATTATCGAACTCGCACAATGTGGTGTCCGCCCTTCCGAGATT
TCACGCCAACTACTTGTTTCCCACGGATGTGTCAGTAAAATATTGGGGCG
ATATTATGAAACCGGATCTGTCCGCCCGGGTGCGATTGGCGGCAGTAAAC
CGAAAGTCGCAACGCCTAAAGTTGTTCATCGAATTGTTAAACTTAAAGAA
GAGAACCCGTGCATGTTTGCGTGGGAAATAAGGAACTCATTATTAGCGGA
AGGTATATGTGACAACGGGAACGTGCCTTCCGTGAGTTCTATAAATAGAA
TATTACGTAATCACGCAGCCGAAAAAGAGACTAAGGAAGCAAAAATGAAA
CAAGAAGAGCTTCAAAAACAAAACGGTTTCGGAATGCTTAATAATTTCAA
TTTCGGTAATTTCGCTACCGCACCTTTTAATGGACTTAATACGATAACGG
GGACTCAAGACGCCGCTACAAATGCGGCCGCGGCTAACGCCGCTTATAGC
CAGTTTCCGTTTTTTAATACGTCATTTCCGATTCTAACGGGCCCTCTTCA
ACAGCAAACTACCGCACAACAGTTATTGTCTTTACCGTTAAATCAAATGT
CGCCGGAACGCAAATTTAAGACGCCGACAAATGACGGAGTGTCGTATCAA
ACAATAGACGACACAACCGGGAATCCCTTCCACGACCATTTACAAGGTTC
CGTTGTTACGTCAGCTGCCATAAGCGATTACGCACAAGTTCTGAGTGAAG
AGTCACTACGGTCGACCGGGGAACCGGACCTACATACCGGACACGCCCAA
CATCAACAACAACATCAAGTGAAGGATATATCACCGAACTCTTCAGTGTT
AGTTGATGACCATCATCATCACAGGAATGACCTATTGTTATCCAAAGGTA
TTCAGTACCACGAAACAAAATATTCAGCAATCAGTAATAAAATTGAAGAT
GACTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000105XLOC_000105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000178-exon-sc0000001-1575043694:826743..827225TCONS_00000178-exon-sc0000001-1575043694:826743..827225Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1575043694:824688..824738TCONS_00000178-exon-sc0000001-1575043694:824688..824738Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1575043694:820254..821216TCONS_00000178-exon-sc0000001-1575043694:820254..821216Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1575043694:818822..819218TCONS_00000178-exon-sc0000001-1575043694:818822..819218Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1575043694:816700..818237TCONS_00000178-exon-sc0000001-1575043694:816700..818237Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1510915933:826743..827225TCONS_00000178-exon-sc0000001-1510915933:826743..827225Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1510915933:824688..824738TCONS_00000178-exon-sc0000001-1510915933:824688..824738Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1510915933:820254..821216TCONS_00000178-exon-sc0000001-1510915933:820254..821216Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1510915933:818822..819218TCONS_00000178-exon-sc0000001-1510915933:818822..819218Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1510915933:816700..818237TCONS_00000178-exon-sc0000001-1510915933:816700..818237Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1491911889:826743..827225TCONS_00000178-exon-sc0000001-1491911889:826743..827225Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1491911889:824688..824738TCONS_00000178-exon-sc0000001-1491911889:824688..824738Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1491911889:820254..821216TCONS_00000178-exon-sc0000001-1491911889:820254..821216Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1491911889:818822..819218TCONS_00000178-exon-sc0000001-1491911889:818822..819218Clytia hemisphaericaexon
TCONS_00000178-exon-sc0000001-1491911889:816700..818237TCONS_00000178-exon-sc0000001-1491911889:816700..818237Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000178-proteinTCONS_00000178-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:816700..827225 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.099377	0	0.346694	0.47145	4.81729	4.75383	16.3576	19.1581	3.39434	2.71675	13.3775	11.2202	14.8204	13.2084	9.97302	26.9862	15.7406	14.8093	0.233491	0.158339	5.92915	7.7319	4.80069	4.96185	6.62582	7.91879	1.61995	0.451276	0.0463324	0.0418475
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001523Paired_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00000178 vs. Swiss-Prot (Human)
Match: PAX2 (Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 PE=1 SV=4)

HSP 1 Score: 209.92 bits (533), Expect = 1.323e-58
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 3 
Query:  540 GGVNQLGGVFVNGRPLPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKVVHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILR 908
            GGVNQLGGVFVNGRPLPD +R RI+ELA  GVRP +ISRQL VSHGCVSKILGRYYETGS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LLAEGICDN  VPSVSSINRI+R
Sbjct:   18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR 140
The following BLAST results are available for this feature:
BLAST of TCONS_00000178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAX21.323e-5879.67Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 P... [more]
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