TCONS_00000178-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000178-protein
Unique NameTCONS_00000178-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000178-protein ID=TCONS_00000178-protein|Name=TCONS_00000178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MTGGIQYHETKYSAISNKIEDPGGVNQLGGVFVNGRPLPDYMRHRIIELA
QCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKV
VHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILRNHAAE
KETKEAKMKQEELQKQNGFGMLNNFNFGNFATAPFNGLNTITGTQDAATN
AAAANAAYSQFPFFNTSFPILTGPLQQQTTAQQLLSLPLNQMSPERKFKT
PTNDGVSYQTIDDTTGNPFHDHLQGSVVTSAAISDYAQVLSEESLRSTGE
PDLHTGHAQHQQQHQVKDISPNSSVLVDDHHHHRNDLLLSKEDHTKLIQH
LEQGSNQLGAANHQDGPSNLTHVDPTGLXLSNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000105XLOC_000105Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000178TCONS_00000178Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001523Paired_dom
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..166
IPR001523Paired domainPRINTSPR00027PAIREDBOXcoord: 63..80
score: 87.58
coord: 81..98
score: 79.78
coord: 25..40
score: 93.82
coord: 43..61
score: 61.44
IPR001523Paired domainSMARTSM00351pax3coord: 21..145
e-value: 6.6E-89
score: 311.3
IPR001523Paired domainPFAMPF00292PAXcoord: 23..145
e-value: 4.7E-65
score: 217.1
IPR001523Paired domainPROSITEPS51057PAIRED_2coord: 21..147
score: 60.578
IPR001523Paired domainCDDcd00131PAXcoord: 23..148
e-value: 1.26182E-79
score: 241.94
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 90..153
e-value: 8.4E-33
score: 111.6
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 24..89
e-value: 1.7E-27
score: 94.5
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 24..147

Blast
BLAST of TCONS_00000178-protein vs. Swiss-Prot (Human)
Match: PAX2 (Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 PE=1 SV=4)

HSP 1 Score: 213.386 bits (542), Expect = 2.321e-65
Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0
Query:   23 GGVNQLGGVFVNGRPLPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKVVHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILR 145
            GGVNQLGGVFVNGRPLPD +R RI+ELA  GVRP +ISRQL VSHGCVSKILGRYYETGS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LLAEGICDN  VPSVSSINRI+R
Sbjct:   18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR 140          
The following BLAST results are available for this feature:
BLAST of TCONS_00000178-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAX22.321e-6579.67Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 P... [more]
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