|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000178-protein ID=TCONS_00000178-protein|Name=TCONS_00000178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MTGGIQYHETKYSAISNKIEDPGGVNQLGGVFVNGRPLPDYMRHRIIELA
QCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKV
VHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILRNHAAE
KETKEAKMKQEELQKQNGFGMLNNFNFGNFATAPFNGLNTITGTQDAATN
AAAANAAYSQFPFFNTSFPILTGPLQQQTTAQQLLSLPLNQMSPERKFKT
PTNDGVSYQTIDDTTGNPFHDHLQGSVVTSAAISDYAQVLSEESLRSTGE
PDLHTGHAQHQQQHQVKDISPNSSVLVDDHHHHRNDLLLSKEDHTKLIQH
LEQGSNQLGAANHQDGPSNLTHVDPTGLXLSNT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 144..166 |
| IPR001523 | Paired domain | PRINTS | PR00027 | PAIREDBOX | coord: 63..80
score: 87.58
coord: 81..98
score: 79.78
coord: 25..40
score: 93.82
coord: 43..61
score: 61.44 |
| IPR001523 | Paired domain | SMART | SM00351 | pax3 | coord: 21..145
e-value: 6.6E-89
score: 311.3 |
| IPR001523 | Paired domain | PFAM | PF00292 | PAX | coord: 23..145
e-value: 4.7E-65
score: 217.1 |
| IPR001523 | Paired domain | PROSITE | PS51057 | PAIRED_2 | coord: 21..147
score: 60.578 |
| IPR001523 | Paired domain | CDD | cd00131 | PAX | coord: 23..148
e-value: 1.26182E-79
score: 241.94 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 90..153
e-value: 8.4E-33
score: 111.6 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 24..89
e-value: 1.7E-27
score: 94.5 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 24..147 |
Blast
BLAST of TCONS_00000178-protein vs. Swiss-Prot (Human)
Match: PAX2 (Paired box protein Pax-2 OS=Homo sapiens GN=PAX2 PE=1 SV=4) HSP 1 Score: 213.386 bits (542), Expect = 2.321e-65 Identity = 98/123 (79.67%), Postives = 108/123 (87.80%), Query Frame = 0 Query: 23 GGVNQLGGVFVNGRPLPDYMRHRIIELAQCGVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKVVHRIVKLKEENPCMFAWEIRNSLLAEGICDNGNVPSVSSINRILR 145
GGVNQLGGVFVNGRPLPD +R RI+ELA GVRP +ISRQL VSHGCVSKILGRYYETGS++PG IGGSKPKVATPKVV +I + K +NP MFAWEIR+ LLAEGICDN VPSVSSINRI+R
Sbjct: 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR 140
The following BLAST results are available for this feature:
|
