TCONS_00010322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010322
Unique NameTCONS_00010322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010322 ID=TCONS_00010322|Name=TCONS_00010322|organism=Clytia hemisphaerica|type=transcript|length=1866bp
TGATCTTCAATCCATTTGATCGTTAATAAtgtgtttttttaataatacTA
TCAGGGAAGTCATAAAGCTTTTGCGATTTGTTTTGCTCCAGTCAGGAATC
AATAATGATTATACAGAAATGCACTTTTTTTAGCTTATGTTATTCCTTTT
TCAAACCAATTCTtcagattttattttttgatggcAACCTATAGAAATCA
GCAAATAAATGTTCTGTTCAAATACTTGTTTTTAGATTCAACTGAAAAAA
TGAACCCTTCATCTGCTTCACTTGATACATTGAATATGAATTATCTATTG
AACGATTTCATTGATGTGATTGTCAATTCTGAGAACTTGCTGGTTCTCAT
TGGAGCTCTTTATGTGTCCAAAGTATCTCTGAAAATAATTTATCGAGTTG
CAAATGCTATTAAGACATATGTTATTCCAAGGTATTCTCCAAACTCTGAG
TTTGCCAAACATTATAAAGGTAGATGGGCTGTTGTAACTGGTGCTTCTGA
AGGGATTGGTCGTGGATATGCAATCCAACTTGCAGCACGTAACATGAATG
TGTTTTTGATCAGCAGAAATGTTGTCAAACTTCAAAATGTGCAACAAGAA
ATTTTTAGGTTGTATGGAAACAAAGTCAAAACCATTTGTTATCCGTTAGA
TATGACAAAACTCAGTGATAGCTCAGTATATGATGCTTTAAAAAGCAAGT
TGGATGAGCTTGATGTTGGTATTTTAGTTAACAATGTCGGATTATTCTTT
AAGCGTATGCAATTTTTCTTGACCGTCCCAAGAGAAACACATGATGGAAT
TATCAACTTGAATATGTCTGCTTTGACAACAATGACTCATATGGTTCTAC
CAGGGATGATCTCAAGTGGTAAAGGAGCTATCATCAATATTGGATCTGGT
GCTTGTGCTCATCCAACACCAACCATGTCCAGCTATTCAGCATCTAAGAA
ATATGTGGATTATTTGACCAAAACCTTGCAATACGAATATGCCGAGGAAA
ACATAACATTCCAATGCATTCACCCATTTTATGTTAGCACTAACATGACT
AACAATGCTAAACCAAGTTTTTTCATTCCAGATCCGGTAACTTATGCAAA
TAGTGCATTGAGTACTTTAGGTTATAGCAACACCAATTATGGTTATTGGT
CTCATGGTTTGTTTGGTTACCTTGGTGAGTGGTTACCAGATTGTGTTTAT
AATTTCTTAGCTGTTCATATTAATATTCATTTGTGGAGCTGGTTGACTGG
TGTCACTATTGATAAGAAGAAACAGTAAAAATTCCACATGATTCCTCTTG
aatataaaaataacaaaccTTACTGAATTGTTTGGTATTCAACACTCGAC
TTCACACTTTGGTTGGGAATATCAACTAATGTTTTTTTCTGTAACTTGGA
AtagttattttttattgtttttacacAACCTGATTCAAATAATTATTAAT
GACATGTGTGTCTTTTTGTAACACTTCTTTGTTTGTCGGAACGCCAACAG
GACGACTTATTTGGTTTTGATATATAAATTTTAGTATCCGAAACTTTTAG
ACATGATTTGATTGATATCTCAACGGTGCTATATTGGTATGTttgtatta
ttatattattagtATATTACTATATAGTTTGAAGGCTCACTGTCCCATTA
TTAGCTTATTTTTGATACAAACTCTTGTACATATTATATCAAcctatttg
aaataaaaatgaaaagaactgttagtgattttatttttatcacaACAGAA
AATTAAGATTGTAAATTGATTTAAATGAACATTGAATTGTAAAATAGATA
TATCAAAGAATGTTACCTTAAGGTAGGTTTATTTGGATAAGAGCTAATTT
AGCAAACAGAAAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00010322-protein

>TCONS_00010322-protein ID=TCONS_00010322-protein|Name=TCONS_00010322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MATYRNQQINVLFKYLFLDSTEKMNPSSASLDTLNMNYLLNDFIDVIVNS
ENLLVLIGALYVSKVSLKIIYRVANAIKTYVIPRYSPNSEFAKHYKGRWA
VVTGASEGIGRGYAIQLAARNMNVFLISRNVVKLQNVQQEIFRLYGNKVK
TICYPLDMTKLSDSSVYDALKSKLDELDVGILVNNVGLFFKRMQFFLTVP
RETHDGIINLNMSALTTMTHMVLPGMISSGKGAIINIGSGACAHPTPTMS
SYSASKKYVDYLTKTLQYEYAEENITFQCIHPFYVSTNMTNNAKPSFFIP
DPVTYANSALSTLGYSNTNYGYWSHGLFGYLGEWLPDCVYNFLAVHINIH
LWSWLTGVTIDKKKQ
Run BLAST on NCBI

transcript from alignment at sc0000104:430522..432702-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010322 ID=TCONS_00010322|Name=TCONS_00010322|organism=Clytia hemisphaerica|type=transcript|length=2181bp|location=Sequence derived from alignment at sc0000104:430522..432702- (Clytia hemisphaerica)
TGATCTTCAATCCATTTGATCGTTAATAATGTGTTTTTTTAATAATACTA
TCAGGGAAGTCATAAAGCTTTTGCGATTTGTTTTGCTCCAGTCAGGAATC
AATAATGATTATACAGAAATGCACTTTTTTTAGCTTATGTTATTCCTTTT
TCAAACCAATTCTTCAGATTTTATTTTTTGATGGCAACCTATAGAAATCA
GCAAATAAATGTTCTGTTCAAATACTTGTTTTTAGATTCAACTGAAAAAA
TGAACCCTTCATCTGCTTCACTTGATACATTGAATATGAATTATCTATTG
AACGATTTCATTGATGTGATTGTCAATTCTGAGAACTTGCTGGTTCTCAT
TGGAGCTCTTTATGTGTCCAAAGTATCTCTGAAAATAATTTATCGAGTTG
CAAATGCTATTAAGACATATGTTATTCCAAGGTTAGTTTTGATTAAACTT
ACAAATAACTTTTATTACTAAAACTTTTGATAACTGATACACTGTTAAAA
ACTATTAAAAAGGGGAGAATATTTTATCAAAAAGTAAAATAAATCGTCAT
TTTAGTTGAACTCTAACTTTTGTGTTCACAAGAAAAGATTTGGGATCCAT
AACTTTCAAGAAACTAACAAAGAACTATTTTTTCCGTATAACACAAAGAC
AAAGCTTTAGTGTCTTACTTTTATCACATTACTTTAATTTCGATCAAGGT
TTACAAATTGGCCATTATACATTTATCCATATTTTCAATATTCTAGGTAT
TCTCCAAACTCTGAGTTTGCCAAACATTATAAAGGTAGATGGGCTGTTGT
AACTGGTGCTTCTGAAGGGATTGGTCGTGGATATGCAATCCAACTTGCAG
CACGTAACATGAATGTGTTTTTGATCAGCAGAAATGTTGTCAAACTTCAA
AATGTGCAACAAGAAATTTTTAGGTTGTATGGAAACAAAGTCAAAACCAT
TTGTTATCCGTTAGATATGACAAAACTCAGTGATAGCTCAGTATATGATG
CTTTAAAAAGCAAGTTGGATGAGCTTGATGTTGGTATTTTAGTTAACAAT
GTCGGATTATTCTTTAAGCGTATGCAATTTTTCTTGACCGTCCCAAGAGA
AACACATGATGGAATTATCAACTTGAATATGTCTGCTTTGACAACAATGA
CTCATATGGTTCTACCAGGGATGATCTCAAGTGGTAAAGGAGCTATCATC
AATATTGGATCTGGTGCTTGTGCTCATCCAACACCAACCATGTCCAGCTA
TTCAGCATCTAAGAAATATGTGGATTATTTGACCAAAACCTTGCAATACG
AATATGCCGAGGAAAACATAACATTCCAATGCATTCACCCATTTTATGTT
AGCACTAACATGACTAACAATGCTAAACCAAGTTTTTTCATTCCAGATCC
GGTAACTTATGCAAATAGTGCATTGAGTACTTTAGGTTATAGCAACACCA
ATTATGGTTATTGGTCTCATGGTTTGTTTGGTTACCTTGGTGAGTGGTTA
CCAGATTGTGTTTATAATTTCTTAGCTGTTCATATTAATATTCATTTGTG
GAGCTGGTTGACTGGTGTCACTATTGATAAGAAGAAACAGTAAAAATTCC
ACATGATTCCTCTTGAATATAAAAATAACAAACCTTACTGAATTGTTTGG
TATTCAACACTCGACTTCACACTTTGGTTGGGAATATCAACTAATGTTTT
TTTCTGTAACTTGGAATAGTTATTTTTTATTGTTTTTACACAACCTGATT
CAAATAATTATTAATGACATGTGTGTCTTTTTGTAACACTTCTTTGTTTG
TCGGAACGCCAACAGGACGACTTATTTGGTTTTGATATATAAATTTTAGT
ATCCGAAACTTTTAGACATGATTTGATTGATATCTCAACGGTGCTATATT
GGTATGTTTGTATTATTATATTATTAGTATATTACTATATAGTTTGAAGG
CTCACTGTCCCATTATTAGCTTATTTTTGATACAAACTCTTGTACATATT
ATATCAACCTATTTGAAATAAAAATGAAAAGAACTGTTAGTGATTTTATT
TTTATCACAACAGAAAATTAAGATTGTAAATTGATTTAAATGAACATTGA
ATTGTAAAATAGATATATCAAAGAATGTTACCTTAAGGTAGGTTTATTTG
GATAAGAGCTAATTTAGCAAACAGAAAAAAG

Coding sequence (CDS) from alignment at sc0000104:430522..432702-

>TCONS_00010322 ID=TCONS_00010322|Name=TCONS_00010322|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000104:430522..432702- (Clytia hemisphaerica)
GTATTCTCCAAACTCTGAGTTTGCCAAACATTATAAAGGTAGATGGGCTG
TTGTAACTGGTGCTTCTGAAGGGATTGGTCGTGGATATGCAATCCAACTT
GCAGCACGTAACATGAATGTGTTTTTGATCAGCAGAAATGTTGTCAAACT
TCAAAATGTGCAACAAGAAATTTTTAGGTTGTATGGAAACAAAGTCAAAA
CCATTTGTTATCCGTTAGATATGACAAAACTCAGTGATAGCTCAGTATAT
GATGCTTTAAAAAGCAAGTTGGATGAGCTTGATGTTGGTATTTTAGTTAA
CAATGTCGGATTATTCTTTAAGCGTATGCAATTTTTCTTGACCGTCCCAA
GAGAAACACATGATGGAATTATCAACTTGAATATGTCTGCTTTGACAACA
ATGACTCATATGGTTCTACCAGGGATGATCTCAAGTGGTAAAGGAGCTAT
CATCAATATTGGATCTGGTGCTTGTGCTCATCCAACACCAACCATGTCCA
GCTATTCAGCATCTAAGAAATATGTGGATTATTTGACCAAAACCTTGCAA
TACGAATATGCCGAGGAAAACATAACATTCCAATGCATTCACCCATTTTA
TGTTAGCACTAACATGACTAACAATGCTAAACCAAGTTTTTTCATTCCAG
ATCCGGTAACTTATGCAAATAGTGCATTGAGTACTTTAGGTTATAGCAAC
ACCAATTATGGTTATTGGTCTCATGGTTTGTTTGGTTACCTTGGTGAGTG
GTTACCAGATTGTGTTTATAATTTCTTAGCTGTTCATATTAATATTCATT
TGTGGAGCTGGTTGACTGGTGTCACTATTGATAAGAAGAAACAGTAAATG
GCAACCTATAGAAATCAGCAAATAAATGTTCTGTTCAAATACTTGTTTTT
AGATTCAACTGAAAAAATGAACCCTTCATCTGCTTCACTTGATACATTGA
ATATGAATTATCTATTGAACGATTTCATTGATGTGATTGTCAATTCTGAG
AACTTGCTGGTTCTCATTGGAGCTCTTTATGTGTCCAAAGTATCTCTGAA
AATAATTTATCGAGTTGCAAATGCTATTAAGACATATGTTATTCCAAGGT
ATTCTCCAAACTCTGAGTTTGCCAAACATTATAAAGGTAGATGGGCTGTT
GTAACTGGTGCTTCTGAAGGGATTGGTCGTGGATATGCAATCCAACTTGC
AGCACGTAACATGAATGTGTTTTTGATCAGCAGAAATGTTGTCAAACTTC
AAAATGTGCAACAAGAAATTTTTAGGTTGTATGGAAACAAAGTCAAAACC
ATTTGTTATCCGTTAGATATGACAAAACTCAGTGATAGCTCAGTATATGA
TGCTTTAAAAAGCAAGTTGGATGAGCTTGATGTTGGTATTTTAGTTAACA
ATGTCGGATTATTCTTTAAGCGTATGCAATTTTTCTTGACCGTCCCAAGA
GAAACACATGATGGAATTATCAACTTGAATATGTCTGCTTTGACAACAAT
GACTCATATGGTTCTACCAGGGATGATCTCAAGTGGTAAAGGAGCTATCA
TCAATATTGGATCTGGTGCTTGTGCTCATCCAACACCAACCATGTCCAGC
TATTCAGCATCTAAGAAATATGTGGATTATTTGACCAAAACCTTGCAATA
CGAATATGCCGAGGAAAACATAACATTCCAATGCATTCACCCATTTTATG
TTAGCACTAACATGACTAACAATGCTAAACCAAGTTTTTTCATTCCAGAT
CCGGTAACTTATGCAAATAGTGCATTGAGTACTTTAGGTTATAGCAACAC
CAATTATGGTTATTGGTCTCATGGTTTGTTTGGTTACCTTGGTGAGTGGT
TACCAGATTGTGTTTATAATTTCTTAGCTGTTCATATTAATATTCATTTG
TGGAGCTGGTTGACTGGTGTCACTATTGATAAGAAGAAACAGTAAATGGC
AACCTATAGAAATCAGCAAATAAATGTTCTGTTCAAATACTTGTTTTTAG
ATTCAACTGAAAAAATGAACCCTTCATCTGCTTCACTTGATACATTGAAT
ATGAATTATCTATTGAACGATTTCATTGATGTGATTGTCAATTCTGAGAA
CTTGCTGGTTCTCATTGGAGCTCTTTATGTGTCCAAAGTATCTCTGAAAA
TAATTTATCGAGTTGCAAATGCTATTAAGACATATGTTATTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005791XLOC_005791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010322-proteinTCONS_00010322-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010322-exon-sc0000104-1575043694:432272..432702TCONS_00010322-exon-sc0000104-1575043694:432272..432702Clytia hemisphaericaexon
TCONS_00010322-exon-sc0000104-1575043694:430522..431956TCONS_00010322-exon-sc0000104-1575043694:430522..431956Clytia hemisphaericaexon
TCONS_00010322-exon-sc0000104-1510915933:432272..432702TCONS_00010322-exon-sc0000104-1510915933:432272..432702Clytia hemisphaericaexon
TCONS_00010322-exon-sc0000104-1510915933:430522..431956TCONS_00010322-exon-sc0000104-1510915933:430522..431956Clytia hemisphaericaexon
TCONS_00010322-exon-sc0000104-1491911889:432272..432702TCONS_00010322-exon-sc0000104-1491911889:432272..432702Clytia hemisphaericaexon
TCONS_00010322-exon-sc0000104-1491911889:430522..431956TCONS_00010322-exon-sc0000104-1491911889:430522..431956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:430522..432702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.22891	6.8883	2.45668	1.21861	3.84161	2.55244	2.66062	3.064	2.67532	2.49637	1.93931	1.65075	1.04092	1.42909	2.6413	2.63094	3.07447	3.00464	1.94106	1.40026	3.65894	3.88379	17.5897	15.864	1.30888	1.33729	2.15789	1.48039	9.11946	10.54
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00010322 vs. Swiss-Prot (Human)
Match: HSDL1 (Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Homo sapiens GN=HSDL1 PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.171e-72
Identity = 127/290 (43.79%), Postives = 185/290 (63.79%), Query Frame = 1 
Query:  340 LVLIGALYVSKVSLKIIYRVANAIKTYVIPRYSPNSEFAKHYKGRWAVVTGASEGIGRGYAIQLAARNMNVFLISRNVVKLQNVQQEIFRLYGNKVKTICYPLDMTKLSDSSVYDALKSKLDELDVGILVNNVGLFFKRMQFFLTVPRETHDGIINLNMSALTTMTHMVLPGMISSGKGAIINIGSGACAHPTPTMSSYSASKKYVDYLTKTLQYEYAEENITFQCIHPFYVSTNMTNNA----KPSFFIPDPVTYANSALSTLGYSNTNYGYWSHG---LFG-YLGEWL 1185
            L L+GA Y ++ S+ +I    + I+ + IPR    ++  K Y GRWAVV+GA++GIG+ YA +LA+R +N+ LISRN  KLQ V ++I   Y  KV+T     D +  S   +Y  ++  L + DVGILVNNVG+F+   Q+F  +  +    IIN+N++A + M H+VLPGM+   KGAI+ I SG+C  PTP ++++SASK Y+D+ ++ LQYEYA + I  Q + PFYV+T+MT  +    + S+ +P P  YA+ A+STLG S    GYWSH    LF  Y+ EWL
Sbjct:   25 LALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRADLIKQY-GRWAVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTY--KVETDIIVADFS--SGREIYLPIREALKDKDVGILVNNVGVFYPYPQYFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCSWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00010322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HSDL11.171e-7243.79Inactive hydroxysteroid dehydrogenase-like protein... [more]
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