TCONS_00010322-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00010322-protein
Unique Name	TCONS_00010322-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	365

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00010322-protein ID=TCONS_00010322-protein|Name=TCONS_00010322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MATYRNQQINVLFKYLFLDSTEKMNPSSASLDTLNMNYLLNDFIDVIVNS
ENLLVLIGALYVSKVSLKIIYRVANAIKTYVIPRYSPNSEFAKHYKGRWA
VVTGASEGIGRGYAIQLAARNMNVFLISRNVVKLQNVQQEIFRLYGNKVK
TICYPLDMTKLSDSSVYDALKSKLDELDVGILVNNVGLFFKRMQFFLTVP
RETHDGIINLNMSALTTMTHMVLPGMISSGKGAIINIGSGACAHPTPTMS
SYSASKKYVDYLTKTLQYEYAEENITFQCIHPFYVSTNMTNNAKPSFFIP
DPVTYANSALSTLGYSNTNYGYWSHGLFGYLGEWLPDCVYNFLAVHINIH
LWSWLTGVTIDKKKQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_005791	XLOC_005791	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00010322	TCONS_00010322	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR020904	Sc_DH/Rdtase_CS
IPR016040	NAD(P)-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 232..240 score: 54.33 coord: 177..188 score: 39.37 coord: 252..271 score: 36.36
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 177..188 score: 38.37 coord: 273..290 score: 25.38 coord: 252..271 score: 37.79 coord: 226..242 score: 33.17 coord: 99..116 score: 43.09
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 99..293 e-value: 3.4E-42 score: 144.0
None	No IPR available	GENE3D	3.40.50.720		coord: 63..294 e-value: 4.8E-42 score: 143.2
None	No IPR available	PIRSF	PIRSF000126	11-beta-HSD1	coord: 46..352 e-value: 5.4E-85 score: 282.9
None	No IPR available	CDD	cd05356	17beta-HSD1_like_SDR_c	coord: 97..336 e-value: 5.42692E-92 score: 277.177
IPR020904	Short-chain dehydrogenase/reductase, conserved site	PROSITE	PS00061	ADH_SHORT	coord: 239..267
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 94..351

Blast

[Close]

BLAST of TCONS_00010322-protein vs. Swiss-Prot (Human)
Match: HSDL1 (Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Homo sapiens GN=HSDL1 PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 6.552e-77
Identity = 127/290 (43.79%), Postives = 185/290 (63.79%), Query Frame = 0

Query:   54 LVLIGALYVSKVSLKIIYRVANAIKTYVIPRYSPNSEFAKHYKGRWAVVTGASEGIGRGYAIQLAARNMNVFLISRNVVKLQNVQQEIFRLYGNKVKTICYPLDMTKLSDSSVYDALKSKLDELDVGILVNNVGLFFKRMQFFLTVPRETHDGIINLNMSALTTMTHMVLPGMISSGKGAIINIGSGACAHPTPTMSSYSASKKYVDYLTKTLQYEYAEENITFQCIHPFYVSTNMTNNA----KPSFFIPDPVTYANSALSTLGYSNTNYGYWSHG---LFG-YLGEWL 335
            L L+GA Y ++ S+ +I    + I+ + IPR    ++  K Y GRWAVV+GA++GIG+ YA +LA+R +N+ LISRN  KLQ V ++I   Y  KV+T     D +  S   +Y  ++  L + DVGILVNNVG+F+   Q+F  +  +    IIN+N++A + M H+VLPGM+   KGAI+ I SG+C  PTP ++++SASK Y+D+ ++ LQYEYA + I  Q + PFYV+T+MT  +    + S+ +P P  YA+ A+STLG S    GYWSH    LF  Y+ EWL
Sbjct:   25 LALVGAWYTARKSITVICDFYSLIRLHFIPRLGSRADLIKQY-GRWAVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTY--KVETDIIVADFS--SGREIYLPIREALKDKDVGILVNNVGVFYPYPQYFTQLSEDKLWDIINVNIAAASLMVHVVLPGMVERKKGAIVTISSGSCCKPTPQLAAFSASKAYLDHFSRALQYEYASKGIFVQSLIPFYVATSMTAPSNFLHRCSWLVPSPKVYAHHAVSTLGISKRTTGYWSHSIQFLFAQYMPEWL 309

The following BLAST results are available for this feature:

BLAST of TCONS_00010322-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00010322-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HSDL1	6.552e-77	43.79	Inactive hydroxysteroid dehydrogenase-like protein...	[more]

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TCONS_00010322-protein (polypeptide) - C. hemisphaerica