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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=transcript|length=1453bp
TTTCTGTGAGATATAGTATCGTATGCCGTTTGACGCAGAGCTTTTGCAAA
AGATCTCAATTCAATATATGTAAATTTGGCTGGAAAAATAATCAATGCAA
AGAAAAAGTGTGGTgctatttcaagaaaaaaaatcttagtGGTTTAAGAA
gaggaattttgaaaatttcaaaaccgAACACTTGGAGGAAAGGGAAAAAG
AGTTGTATCAAAAATTTCGACATTTGGTTATTCGTGATAAAGGAACTGAA
AAAAGTAACAGACTCAAACACAAATACGAGAGGCTTTAAAAGAACTTTTT
ACATGATGTCAGCATCTCAAACAAAACAAACCAGCTGTAAATTTTCAGCT
TACCATCCAGTCATTCCGAAGAATTATACTCCAGCATGGAAACAAGATAT
GAAAAACAGAACACTGATCACCGAGAATGCTAAACTTGCAAATATTGAAT
ACAATGGGACACAGTCGACATTATATCTAGAGAAACGTGAACGAGTGGTC
CCAAGCGAACCTATAAGAGATACAAAAGCATTGGGTACAAGTACTGAGGG
TTTTATTCCGCCAATGCATTCATCTCTCTCTAAATACCAAAGTTCTCTAA
TGTTTAGAACATCCCATGGAATTTGAATTGGCTATAGCCCTAGAATAGTG
TGGCGAAGTTAATCTTTTTGTATATTATCAAAATCACTTGAAAGAGTTAC
CtttgaatttttagaaaatacCTTTTGTCATCTTTTACTATTGTATCACA
TTATAATAATGGTATAAGTTTTCATGGGGATTATACTTCGCAGTTgagct
tattcgcgaaattttaagattttgctggaatcaaatttcgcggatgaggg
gtagaaatgacaattttcgaAAAGGGCCGAAACCTTGAAATAGATTTTTT
acaggaaaaatgaaaaagcttTCTTTCAAATTAAATGATATGAAGAGTTA
TCTGCTTTGGAATGGATCCCTCACGTaaacacaaaatgaaaaaacgataa
aaatagaaagtttCGTGGATTGTAAAAAAGAATTcacattttttcacatt
tttagatgaaatttaAGATGATGGGACTTAACTtggcggatgacacccaa
atccgcgagaTCCGCGAAATGTACaacattgattttgattttagccaaag
gaaataaaataaacaCAATAGTAGCTATAAGGGAGAGAAATCCATTTTTT
AGGTGATGAGGATTTTAGGTTATATTGTTTACACTTCCATTGATAAAACC
AGCAAAGATTTCAAATGTTTAAGGTATATTTCTCGACGttctgatttttt
gtccaatttcTTTCGGTGGTAGTCTTCTTCTAGGGGTttatataaaaaac
aacaacaaattaaaAAGTAGGATTCAacggaaaaagaaaaattgaaacaa
aaaacagTTCAAAAGAATGAAACTAATTATGGACTATAAAGCCCACATGT
AGG Run BLAST on NCBI protein sequence of TCONS_00073837-protein >TCONS_00073837-protein ID=TCONS_00073837-protein|Name=TCONS_00073837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
SVRYSIVCRLTQSFCKRSQFNICKFGWKNNQCKEKVWCYFKKKNLSGLRR
GILKISKPNTWRKGKKSCIKNFDIWLFVIKELKKVTDSNTNTRGFKRTFY
MMSASQTKQTSCKFSAYHPVIPKNYTPAWKQDMKNRTLITENAKLANIEY
NGTQSTLYLEKRERVVPSEPIRDTKALGTSTEGFIPPMHSSLSKYQSSLM
FRTSHGI Run BLAST on NCBI transcript from alignment at scaffold_98:109775..111227 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at scaffold_98:109775..111227 (Clytia hemisphaerica)
CCTACATGTGGGCTTTATAGTCCATAATTAGTTTCATTCTTTTGAActgt
tttttgtttcaatttttctttttccgtTGAATCCTACTTtttaatttgtt
gttgttttttatataaACCCCTAGAAGAAGACTACCACCGAAAgaaattg
gacaaaaaatcagaaCGTCGAGAAATATACCTTAAACATTTGAAATCTTT
GCTGGTTTTATCAATGGAAGTGTAAACAATATAACCTAAAATCCTCATCA
CCTAAAAAATGGATTTCTCTCCCTTATAGCTACTATTGtgtttattttat
ttcctttggctaaaatcaaaatcaatgttGTACATTTCGCGGAtctcgcg
gatttgggtgtcatccgccaAGTTAAGTCCCATCATCTtaaatttcatct
aaaaatgtgaaaaaatgtgAATTCTTTTTTACAATCCACGaaactttcta
tttttatcgttttttcattttgtgtttACGTGAGGGATCCATTCCAAAGC
AGATAACTCTTCATATCATTTAATTTGAAAGAaagctttttcatttttcc
tgtAAAAAATCTATTTCAAGGTTTCGGCCCTTTtcgaaaattgtcatttc
tacccctcatccgcgaaatttgattccagcaaaatcttaaaatttcgcga
ataagctcAACTGCGAAGTATAATCCCCATGAAAACTTATACCATTATTA
TAATGTGATACAATAGTAAAAGATGACAAAAGgtattttctaaaaattca
aaGGTAACTCTTTCAAGTGATTTTGATAATATACAAAAAGATTAACTTCG
CCACACTATTCTAGGGCTATAGCCAATTCAAATTCCATGGGATGTTCTAA
ACATTAGAGAACTTTGGTATTTAGAGAGAGATGAATGCATTGGCGGAATA
AAACCCTCAGTACTTGTACCCAATGCTTTTGTATCTCTTATAGGTTCGCT
TGGGACCACTCGTTCACGTTTCTCTAGATATAATGTCGACTGTGTCCCAT
TGTATTCAATATTTGCAAGTTTAGCATTCTCGGTGATCAGTGTTCTGTTT
TTCATATCTTGTTTCCATGCTGGAGTATAATTCTTCGGAATGACTGGATG
GTAAGCTGAAAATTTACAGCTGGTTTGTTTTGTTTGAGATGCTGACATCA
TGTAAAAAGTTCTTTTAAAGCCTCTCGTATTTGTGTTTGAGTCTGTTACT
TTTTTCAGTTCCTTTATCACGAATAACCAAATGTCGAAATTTTTGATACA
ACTCTTTTTCCCTTTCCTCCAAGTGTTcggttttgaaattttcaaaattc
ctcTTCTTAAACCactaagattttttttcttgaaatagcACCACACTTTT
TCTTTGCATTGATTATTTTTCCAGCCAAATTTACATATATTGAATTGAGA
TCTTTTGCAAAAGCTCTGCGTCAAACGGCATACGATACTATATCTCACAG
AAA Coding sequence (CDS) from alignment at scaffold_98:109775..111227 >TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_98:109775..111227 (Clytia hemisphaerica)
TCAAATTCCATGGGATGTTCTAAACATTAGAGAACTTTGGTATTTAGAGA
GAGATGAATGCATTGGCGGAATAAAACCCTCAGTACTTGTACCCAATGCT
TTTGTATCTCTTATAGGTTCGCTTGGGACCACTCGTTCACGTTTCTCTAG
ATATAATGTCGACTGTGTCCCATTGTATTCAATATTTGCAAGTTTAGCAT
TCTCGGTGATCAGTGTTCTGTTTTTCATATCTTGTTTCCATGCTGGAGTA
TAATTCTTCGGAATGACTGGATGGTAAGCTGAAAATTTACAGCTGGTTTG
TTTTGTTTGAGATGCTGACATCATGTAAAAAGTTCTTTTAAAGCCTCTCG
TATTTGTGTTTGAGTCTGTTACTTTTTTCAGTTCCTTTATCACGAATAAC
CAAATGTCGAAATTTTTGATACAACTCTTTTTCCCTTTCCTCCAAGTGTT
cggttttgaaattttcaaaattcctcTTCTTAAACCactaagattttttt
tcttgaaatagcACCACACTTTTTCTTTGCATTGATTATTTTTCCAGCCA
AATTTACATATATTGAATTGAGATCTTTTGCAAAAGCTCTGCGTCAAACG
GCATACGATACTATATCTCACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073837-exon-scaffold_98-1491911889:109775..111227 | TCONS_00073837-exon-scaffold_98-1491911889:109775..111227 | Clytia hemisphaerica | exon |
| TCONS_00073837-exon-scaffold_98-1510915933:109775..111227 | TCONS_00073837-exon-scaffold_98-1510915933:109775..111227 | Clytia hemisphaerica | exon |
| TCONS_00073837-exon-scaffold_98-1575043694:109775..111227 | TCONS_00073837-exon-scaffold_98-1575043694:109775..111227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:109775..111227 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027965 | DUF4513 |
Blast
The following BLAST results are available for this feature:
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