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TCONS_00073837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073837
Unique NameTCONS_00073837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=transcript|length=1453bp
TTTCTGTGAGATATAGTATCGTATGCCGTTTGACGCAGAGCTTTTGCAAA
AGATCTCAATTCAATATATGTAAATTTGGCTGGAAAAATAATCAATGCAA
AGAAAAAGTGTGGTgctatttcaagaaaaaaaatcttagtGGTTTAAGAA
gaggaattttgaaaatttcaaaaccgAACACTTGGAGGAAAGGGAAAAAG
AGTTGTATCAAAAATTTCGACATTTGGTTATTCGTGATAAAGGAACTGAA
AAAAGTAACAGACTCAAACACAAATACGAGAGGCTTTAAAAGAACTTTTT
ACATGATGTCAGCATCTCAAACAAAACAAACCAGCTGTAAATTTTCAGCT
TACCATCCAGTCATTCCGAAGAATTATACTCCAGCATGGAAACAAGATAT
GAAAAACAGAACACTGATCACCGAGAATGCTAAACTTGCAAATATTGAAT
ACAATGGGACACAGTCGACATTATATCTAGAGAAACGTGAACGAGTGGTC
CCAAGCGAACCTATAAGAGATACAAAAGCATTGGGTACAAGTACTGAGGG
TTTTATTCCGCCAATGCATTCATCTCTCTCTAAATACCAAAGTTCTCTAA
TGTTTAGAACATCCCATGGAATTTGAATTGGCTATAGCCCTAGAATAGTG
TGGCGAAGTTAATCTTTTTGTATATTATCAAAATCACTTGAAAGAGTTAC
CtttgaatttttagaaaatacCTTTTGTCATCTTTTACTATTGTATCACA
TTATAATAATGGTATAAGTTTTCATGGGGATTATACTTCGCAGTTgagct
tattcgcgaaattttaagattttgctggaatcaaatttcgcggatgaggg
gtagaaatgacaattttcgaAAAGGGCCGAAACCTTGAAATAGATTTTTT
acaggaaaaatgaaaaagcttTCTTTCAAATTAAATGATATGAAGAGTTA
TCTGCTTTGGAATGGATCCCTCACGTaaacacaaaatgaaaaaacgataa
aaatagaaagtttCGTGGATTGTAAAAAAGAATTcacattttttcacatt
tttagatgaaatttaAGATGATGGGACTTAACTtggcggatgacacccaa
atccgcgagaTCCGCGAAATGTACaacattgattttgattttagccaaag
gaaataaaataaacaCAATAGTAGCTATAAGGGAGAGAAATCCATTTTTT
AGGTGATGAGGATTTTAGGTTATATTGTTTACACTTCCATTGATAAAACC
AGCAAAGATTTCAAATGTTTAAGGTATATTTCTCGACGttctgatttttt
gtccaatttcTTTCGGTGGTAGTCTTCTTCTAGGGGTttatataaaaaac
aacaacaaattaaaAAGTAGGATTCAacggaaaaagaaaaattgaaacaa
aaaacagTTCAAAAGAATGAAACTAATTATGGACTATAAAGCCCACATGT
AGG
Run BLAST on NCBI

protein sequence of TCONS_00073837-protein

>TCONS_00073837-protein ID=TCONS_00073837-protein|Name=TCONS_00073837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
SVRYSIVCRLTQSFCKRSQFNICKFGWKNNQCKEKVWCYFKKKNLSGLRR
GILKISKPNTWRKGKKSCIKNFDIWLFVIKELKKVTDSNTNTRGFKRTFY
MMSASQTKQTSCKFSAYHPVIPKNYTPAWKQDMKNRTLITENAKLANIEY
NGTQSTLYLEKRERVVPSEPIRDTKALGTSTEGFIPPMHSSLSKYQSSLM
FRTSHGI
Run BLAST on NCBI

transcript from alignment at scaffold_98:109775..111227

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at scaffold_98:109775..111227 (Clytia hemisphaerica)
CCTACATGTGGGCTTTATAGTCCATAATTAGTTTCATTCTTTTGAActgt tttttgtttcaatttttctttttccgtTGAATCCTACTTtttaatttgtt gttgttttttatataaACCCCTAGAAGAAGACTACCACCGAAAgaaattg gacaaaaaatcagaaCGTCGAGAAATATACCTTAAACATTTGAAATCTTT GCTGGTTTTATCAATGGAAGTGTAAACAATATAACCTAAAATCCTCATCA CCTAAAAAATGGATTTCTCTCCCTTATAGCTACTATTGtgtttattttat ttcctttggctaaaatcaaaatcaatgttGTACATTTCGCGGAtctcgcg gatttgggtgtcatccgccaAGTTAAGTCCCATCATCTtaaatttcatct aaaaatgtgaaaaaatgtgAATTCTTTTTTACAATCCACGaaactttcta tttttatcgttttttcattttgtgtttACGTGAGGGATCCATTCCAAAGC AGATAACTCTTCATATCATTTAATTTGAAAGAaagctttttcatttttcc tgtAAAAAATCTATTTCAAGGTTTCGGCCCTTTtcgaaaattgtcatttc tacccctcatccgcgaaatttgattccagcaaaatcttaaaatttcgcga ataagctcAACTGCGAAGTATAATCCCCATGAAAACTTATACCATTATTA TAATGTGATACAATAGTAAAAGATGACAAAAGgtattttctaaaaattca aaGGTAACTCTTTCAAGTGATTTTGATAATATACAAAAAGATTAACTTCG CCACACTATTCTAGGGCTATAGCCAATTCAAATTCCATGGGATGTTCTAA ACATTAGAGAACTTTGGTATTTAGAGAGAGATGAATGCATTGGCGGAATA AAACCCTCAGTACTTGTACCCAATGCTTTTGTATCTCTTATAGGTTCGCT TGGGACCACTCGTTCACGTTTCTCTAGATATAATGTCGACTGTGTCCCAT TGTATTCAATATTTGCAAGTTTAGCATTCTCGGTGATCAGTGTTCTGTTT TTCATATCTTGTTTCCATGCTGGAGTATAATTCTTCGGAATGACTGGATG GTAAGCTGAAAATTTACAGCTGGTTTGTTTTGTTTGAGATGCTGACATCA TGTAAAAAGTTCTTTTAAAGCCTCTCGTATTTGTGTTTGAGTCTGTTACT TTTTTCAGTTCCTTTATCACGAATAACCAAATGTCGAAATTTTTGATACA ACTCTTTTTCCCTTTCCTCCAAGTGTTcggttttgaaattttcaaaattc ctcTTCTTAAACCactaagattttttttcttgaaatagcACCACACTTTT TCTTTGCATTGATTATTTTTCCAGCCAAATTTACATATATTGAATTGAGA TCTTTTGCAAAAGCTCTGCGTCAAACGGCATACGATACTATATCTCACAG AAA

Coding sequence (CDS) from alignment at scaffold_98:109775..111227

>TCONS_00073837 ID=TCONS_00073837|Name=TCONS_00073837|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_98:109775..111227 (Clytia hemisphaerica)
TCAAATTCCATGGGATGTTCTAAACATTAGAGAACTTTGGTATTTAGAGA
GAGATGAATGCATTGGCGGAATAAAACCCTCAGTACTTGTACCCAATGCT
TTTGTATCTCTTATAGGTTCGCTTGGGACCACTCGTTCACGTTTCTCTAG
ATATAATGTCGACTGTGTCCCATTGTATTCAATATTTGCAAGTTTAGCAT
TCTCGGTGATCAGTGTTCTGTTTTTCATATCTTGTTTCCATGCTGGAGTA
TAATTCTTCGGAATGACTGGATGGTAAGCTGAAAATTTACAGCTGGTTTG
TTTTGTTTGAGATGCTGACATCATGTAAAAAGTTCTTTTAAAGCCTCTCG
TATTTGTGTTTGAGTCTGTTACTTTTTTCAGTTCCTTTATCACGAATAAC
CAAATGTCGAAATTTTTGATACAACTCTTTTTCCCTTTCCTCCAAGTGTT
cggttttgaaattttcaaaattcctcTTCTTAAACCactaagattttttt
tcttgaaatagcACCACACTTTTTCTTTGCATTGATTATTTTTCCAGCCA
AATTTACATATATTGAATTGAGATCTTTTGCAAAAGCTCTGCGTCAAACG
GCATACGATACTATATCTCACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045855XLOC_045855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073837-proteinTCONS_00073837-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073837-exon-scaffold_98-1491911889:109775..111227TCONS_00073837-exon-scaffold_98-1491911889:109775..111227Clytia hemisphaericaexon
TCONS_00073837-exon-scaffold_98-1510915933:109775..111227TCONS_00073837-exon-scaffold_98-1510915933:109775..111227Clytia hemisphaericaexon
TCONS_00073837-exon-scaffold_98-1575043694:109775..111227TCONS_00073837-exon-scaffold_98-1575043694:109775..111227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:109775..111227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 130.916 89.3807 73.9549 72.7026 37.3705 40.5144 23.375 25.6223 0.303474 0.196976 0.0323882 0.0173787 2.41924 2.50158 1.00044 0.412411 2.9504 2.29988 2.06006 1.78371 2.78639 2.65075 0.899423 1.54417 0.0949619 0.0322504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027965DUF4513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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