TCONS_00073770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073770
Unique NameTCONS_00073770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073770 ID=TCONS_00073770|Name=TCONS_00073770|organism=Clytia hemisphaerica|type=transcript|length=2352bp
CTTGAGAATAGGAAATTTTCAGCAAATCCTGGTAAATCACcttaaaaata
atattcaaatcaaaaaaatttcttctctacATGTAAGACATTCGAAGGAA
ATTACATAGAGCAGCTATGAAAAGAATTTACAGTTAAGGATTTGTCTACC
AGTCTCAAAGATTTTCCAATCTAACTCAAAGCATCGATGCGATTGATCAA
TTGTGAGAGTTTTGTCGGTGAAATGAGAAACGTCGCTACAGCATTAGTCC
TCAATGAACGTTTCAATTTAAAACCATGGATATTACAATAAAATTCATCA
GGTTTGTCAGGTAATGAGATGACTAAAACGTAACAGTTACATTCACAATC
AAAACAATGAGCAGCATCTCTAGTTGCGTTCTTGGTGTATTTAGTTCTGG
TGATTCCAGCTTTCTGACATTTCTGTTGCAAGTTTAGAATCAGTTTTTTC
AACTGGTCAAGTTTCTCTTTCAAGAAATCTTTATTAAAACTAGTAGATTT
TTCACTCTTTAAAATATCATTTGTATAATTCAAAAGCATTCTCGTTTCTA
TGAAAGAATCTTCGTCGAATTCGAAACCATTGAAATCTTCTAACCATGAC
ATTGGTGCAAAATTGATTATCTCCGATAGCGAATAACCAGTACTGATAGT
GAAATAATAACAATTTGGTTCTAGAATCAAGAATTGTCCTTCTTTTTGTA
CGcaacgtttcactgtaaaaccTTTTTCCAGAATTTCATTTGGCATTGAG
AATGTATTATGTATTTGATTCTCATCTATAAGCTTTTGTAACTTTGTTTG
TTCAATCTTAGATTCTGGTGTTTCGATAACGTACCAGATCTTATCAGATC
CTGAGTGTAGATAAGATAGAATGTAAAATCCGTATTCATCTATCTCCCAG
AATCCACTGGTTGAAAACACACTCTCAGTTAACAAAAACGGTGAGCTAAC
TTGTGAAACCTTTCCAAGGTATTTTAAAGCAGACAACTCATGATTATAAA
CTGTGGATAATTTCCAAAATACTTTTGCTTTGGCATTCTGGTAAGATTGG
GGATCAGATAATAAATCTAAAGTACCCGCATATGTTGCTGTATGTCGATT
ACTAGAATTGACAACTTTCCAGAAATGATTTTCAATAGTTTCTGCAGACA
TGTCTTTAATTTCGTAACACGTTGCAACGTTACAAGCCATTCGATGGAAA
GTCTCTATAGATACCTTCTTTGAACAAATATTACTTTTTTCATCATGCTT
CCTGGCTTCATTTTTAGCTGCAGATGCAATTCGACTTTTCTCTGCATCAG
TGAGTAACTCGTACGGTAAAACATACTGCATATAAATTTTCTCTAGCTGT
ATAGCACGCCGAGATGCTGATCTAGGTATATGTAATTGTTCTGCAAGTTC
TTTCCAACTCTGGTCAGAATTGACAGAATCGACACCACCAAAATTACTAA
CAACCTCCATCAAATAGGGTAAATCAACTTCAACCAGACCAACAGATGGA
ATCTTAAAAGGTTCCTTTTCATTCTTCTCAAAACATTTCCGCAAACATTG
TAGTGTTGTGAAATTACTACCAGCAGGATGCTTTAATCGATGGACATGGT
ATACTTCAACTTCAAATTTTAGATTCTCTTGAACGTATGAGAAACATTTC
CATGTTTGATCTGGTTGAATAACAACGATACTTCTATGTGTTGATTCAGT
TTCCTCAAATAATTTACCAACAAAAGGAAACAAGGCAGACATTTCATTAC
TAGTGGGTTTTATTTCCTCTACCATAATAAATGAATTCTGTGGTTCTTTC
TCTTTTGATTCAATAAAATATGGCTTTTTAAGTTTTGGTTCAAGTGATGG
TTCTTTCTCTTGGTGCTTTGTTGTTGCTGGTGAATGTGTTTCATTGTCAC
CAGTTGTGGGCGGTAGGGTGGGTTGAAATTTATTGACGGGTGGAGTGGCA
TTATGTGGTTCTATAACGCTCTCAAGGTTAGTTTCGTCTTTAAAGAATTT
GTCCATTTCTTCATCGGGGATAACAGCATTAGACGGGTTGGCAAATATTT
CCAAATCCTTTGGAAGGTATGATAAATctcttgtacacaaaaaattgata
aaatcttCAGTTTTAGGTGGAGTTTGATCAACAACCTCAGGAACAGATTC
TGTATCGATGGGTTGTACTGGGTTTTCGAATGGTGTATGAACATTACTGG
CAAATTTACGTTGAGCTGTCCGTGTGTGTACATGCTTATGAGAATCTTTC
AAACCAACTGATTCCTTGGCTGTTCTCAACCGAAAACTTTTCCTCATCAT
TGTTGTTGatgatattttattttgttatttttttgtaatttagaCACTGT
TG
Run BLAST on NCBI

protein sequence of TCONS_00073770-protein

>TCONS_00073770-protein ID=TCONS_00073770-protein|Name=TCONS_00073770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
MMRKSFRLRTAKESVGLKDSHKHVHTRTAQRKFASNVHTPFENPVQPIDT
ESVPEVVDQTPPKTEDFINFLCTRDLSYLPKDLEIFANPSNAVIPDEEMD
KFFKDETNLESVIEPHNATPPVNKFQPTLPPTTGDNETHSPATTKHQEKE
PSLEPKLKKPYFIESKEKEPQNSFIMVEEIKPTSNEMSALFPFVGKLFEE
TESTHRSIVVIQPDQTWKCFSYVQENLKFEVEVYHVHRLKHPAGSNFTTL
QCLRKCFEKNEKEPFKIPSVGLVEVDLPYLMEVVSNFGGVDSVNSDQSWK
ELAEQLHIPRSASRRAIQLEKIYMQYVLPYELLTDAEKSRIASAAKNEAR
KHDEKSNICSKKVSIETFHRMACNVATCYEIKDMSAETIENHFWKVVNSS
NRHTATYAGTLDLLSDPQSYQNAKAKVFWKLSTVYNHELSALKYLGKVSQ
VSSPFLLTESVFSTSGFWEIDEYGFYILSYLHSGSDKIWYVIETPESKIE
QTKLQKLIDENQIHNTFSMPNEILEKGFTVKRCVQKEGQFLILEPNCYYF
TISTGYSLSEIINFAPMSWLEDFNGFEFDEDSFIETRMLLNYTNDILKSE
KSTSFNKDFLKEKLDQLKKLILNLQQKCQKAGITRTKYTKNATRDAAHCF
DCECNCYVLVISLPDKPDEFYCNIHGFKLKRSLRTNAVATFLISPTKLSQ
LINRIDALS
Run BLAST on NCBI

transcript from alignment at scaffold_97:720478..722829

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073770 ID=TCONS_00073770|Name=TCONS_00073770|organism=Clytia hemisphaerica|type=transcript|length=2352bp|location=Sequence derived from alignment at scaffold_97:720478..722829 (Clytia hemisphaerica)
CAACAGTGtctaaattacaaaaaaataacaaaataaaatatcatCAACAA
CAATGATGAGGAAAAGTTTTCGGTTGAGAACAGCCAAGGAATCAGTTGGT
TTGAAAGATTCTCATAAGCATGTACACACACGGACAGCTCAACGTAAATT
TGCCAGTAATGTTCATACACCATTCGAAAACCCAGTACAACCCATCGATA
CAGAATCTGTTCCTGAGGTTGTTGATCAAACTCCACCTAAAACTGaagat
tttatcaattttttgtgtacaagagATTTATCATACCTTCCAAAGGATTT
GGAAATATTTGCCAACCCGTCTAATGCTGTTATCCCCGATGAAGAAATGG
ACAAATTCTTTAAAGACGAAACTAACCTTGAGAGCGTTATAGAACCACAT
AATGCCACTCCACCCGTCAATAAATTTCAACCCACCCTACCGCCCACAAC
TGGTGACAATGAAACACATTCACCAGCAACAACAAAGCACCAAGAGAAAG
AACCATCACTTGAACCAAAACTTAAAAAGCCATATTTTATTGAATCAAAA
GAGAAAGAACCACAGAATTCATTTATTATGGTAGAGGAAATAAAACCCAC
TAGTAATGAAATGTCTGCCTTGTTTCCTTTTGTTGGTAAATTATTTGAGG
AAACTGAATCAACACATAGAAGTATCGTTGTTATTCAACCAGATCAAACA
TGGAAATGTTTCTCATACGTTCAAGAGAATCTAAAATTTGAAGTTGAAGT
ATACCATGTCCATCGATTAAAGCATCCTGCTGGTAGTAATTTCACAACAC
TACAATGTTTGCGGAAATGTTTTGAGAAGAATGAAAAGGAACCTTTTAAG
ATTCCATCTGTTGGTCTGGTTGAAGTTGATTTACCCTATTTGATGGAGGT
TGTTAGTAATTTTGGTGGTGTCGATTCTGTCAATTCTGACCAGAGTTGGA
AAGAACTTGCAGAACAATTACATATACCTAGATCAGCATCTCGGCGTGCT
ATACAGCTAGAGAAAATTTATATGCAGTATGTTTTACCGTACGAGTTACT
CACTGATGCAGAGAAAAGTCGAATTGCATCTGCAGCTAAAAATGAAGCCA
GGAAGCATGATGAAAAAAGTAATATTTGTTCAAAGAAGGTATCTATAGAG
ACTTTCCATCGAATGGCTTGTAACGTTGCAACGTGTTACGAAATTAAAGA
CATGTCTGCAGAAACTATTGAAAATCATTTCTGGAAAGTTGTCAATTCTA
GTAATCGACATACAGCAACATATGCGGGTACTTTAGATTTATTATCTGAT
CCCCAATCTTACCAGAATGCCAAAGCAAAAGTATTTTGGAAATTATCCAC
AGTTTATAATCATGAGTTGTCTGCTTTAAAATACCTTGGAAAGGTTTCAC
AAGTTAGCTCACCGTTTTTGTTAACTGAGAGTGTGTTTTCAACCAGTGGA
TTCTGGGAGATAGATGAATACGGATTTTACATTCTATCTTATCTACACTC
AGGATCTGATAAGATCTGGTACGTTATCGAAACACCAGAATCTAAGATTG
AACAAACAAAGTTACAAAAGCTTATAGATGAGAATCAAATACATAATACA
TTCTCAATGCCAAATGAAATTCTGGAAAAAggttttacagtgaaacgttg
CGTACAAAAAGAAGGACAATTCTTGATTCTAGAACCAAATTGTTATTATT
TCACTATCAGTACTGGTTATTCGCTATCGGAGATAATCAATTTTGCACCA
ATGTCATGGTTAGAAGATTTCAATGGTTTCGAATTCGACGAAGATTCTTT
CATAGAAACGAGAATGCTTTTGAATTATACAAATGATATTTTAAAGAGTG
AAAAATCTACTAGTTTTAATAAAGATTTCTTGAAAGAGAAACTTGACCAG
TTGAAAAAACTGATTCTAAACTTGCAACAGAAATGTCAGAAAGCTGGAAT
CACCAGAACTAAATACACCAAGAACGCAACTAGAGATGCTGCTCATTGTT
TTGATTGTGAATGTAACTGTTACGTTTTAGTCATCTCATTACCTGACAAA
CCTGATGAATTTTATTGTAATATCCATGGTTTTAAATTGAAACGTTCATT
GAGGACTAATGCTGTAGCGACGTTTCTCATTTCACCGACAAAACTCTCAC
AATTGATCAATCGCATCGATGCTTTGAGTTAGATTGGAAAATCTTTGAGA
CTGGTAGACAAATCCTTAACTGTAAATTCTTTTCATAGCTGCTCTATGTA
ATTTCCTTCGAATGTCTTACATgtagagaagaaatttttttgatttgaat
attatttttaagGTGATTTACCAGGATTTGCTGAAAATTTCCTATTCTCA
AG

Coding sequence (CDS) from alignment at scaffold_97:720478..722829

>TCONS_00073770 ID=TCONS_00073770|Name=TCONS_00073770|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_97:720478..722829 (Clytia hemisphaerica)
ATGATGAGGAAAAGTTTTCGGTTGAGAACAGCCAAGGAATCAGTTGGTTT
GAAAGATTCTCATAAGCATGTACACACACGGACAGCTCAACGTAAATTTG
CCAGTAATGTTCATACACCATTCGAAAACCCAGTACAACCCATCGATACA
GAATCTGTTCCTGAGGTTGTTGATCAAACTCCACCTAAAACTGaagattt
tatcaattttttgtgtacaagagATTTATCATACCTTCCAAAGGATTTGG
AAATATTTGCCAACCCGTCTAATGCTGTTATCCCCGATGAAGAAATGGAC
AAATTCTTTAAAGACGAAACTAACCTTGAGAGCGTTATAGAACCACATAA
TGCCACTCCACCCGTCAATAAATTTCAACCCACCCTACCGCCCACAACTG
GTGACAATGAAACACATTCACCAGCAACAACAAAGCACCAAGAGAAAGAA
CCATCACTTGAACCAAAACTTAAAAAGCCATATTTTATTGAATCAAAAGA
GAAAGAACCACAGAATTCATTTATTATGGTAGAGGAAATAAAACCCACTA
GTAATGAAATGTCTGCCTTGTTTCCTTTTGTTGGTAAATTATTTGAGGAA
ACTGAATCAACACATAGAAGTATCGTTGTTATTCAACCAGATCAAACATG
GAAATGTTTCTCATACGTTCAAGAGAATCTAAAATTTGAAGTTGAAGTAT
ACCATGTCCATCGATTAAAGCATCCTGCTGGTAGTAATTTCACAACACTA
CAATGTTTGCGGAAATGTTTTGAGAAGAATGAAAAGGAACCTTTTAAGAT
TCCATCTGTTGGTCTGGTTGAAGTTGATTTACCCTATTTGATGGAGGTTG
TTAGTAATTTTGGTGGTGTCGATTCTGTCAATTCTGACCAGAGTTGGAAA
GAACTTGCAGAACAATTACATATACCTAGATCAGCATCTCGGCGTGCTAT
ACAGCTAGAGAAAATTTATATGCAGTATGTTTTACCGTACGAGTTACTCA
CTGATGCAGAGAAAAGTCGAATTGCATCTGCAGCTAAAAATGAAGCCAGG
AAGCATGATGAAAAAAGTAATATTTGTTCAAAGAAGGTATCTATAGAGAC
TTTCCATCGAATGGCTTGTAACGTTGCAACGTGTTACGAAATTAAAGACA
TGTCTGCAGAAACTATTGAAAATCATTTCTGGAAAGTTGTCAATTCTAGT
AATCGACATACAGCAACATATGCGGGTACTTTAGATTTATTATCTGATCC
CCAATCTTACCAGAATGCCAAAGCAAAAGTATTTTGGAAATTATCCACAG
TTTATAATCATGAGTTGTCTGCTTTAAAATACCTTGGAAAGGTTTCACAA
GTTAGCTCACCGTTTTTGTTAACTGAGAGTGTGTTTTCAACCAGTGGATT
CTGGGAGATAGATGAATACGGATTTTACATTCTATCTTATCTACACTCAG
GATCTGATAAGATCTGGTACGTTATCGAAACACCAGAATCTAAGATTGAA
CAAACAAAGTTACAAAAGCTTATAGATGAGAATCAAATACATAATACATT
CTCAATGCCAAATGAAATTCTGGAAAAAggttttacagtgaaacgttgCG
TACAAAAAGAAGGACAATTCTTGATTCTAGAACCAAATTGTTATTATTTC
ACTATCAGTACTGGTTATTCGCTATCGGAGATAATCAATTTTGCACCAAT
GTCATGGTTAGAAGATTTCAATGGTTTCGAATTCGACGAAGATTCTTTCA
TAGAAACGAGAATGCTTTTGAATTATACAAATGATATTTTAAAGAGTGAA
AAATCTACTAGTTTTAATAAAGATTTCTTGAAAGAGAAACTTGACCAGTT
GAAAAAACTGATTCTAAACTTGCAACAGAAATGTCAGAAAGCTGGAATCA
CCAGAACTAAATACACCAAGAACGCAACTAGAGATGCTGCTCATTGTTTT
GATTGTGAATGTAACTGTTACGTTTTAGTCATCTCATTACCTGACAAACC
TGATGAATTTTATTGTAATATCCATGGTTTTAAATTGAAACGTTCATTGA
GGACTAATGCTGTAGCGACGTTTCTCATTTCACCGACAAAACTCTCACAA
TTGATCAATCGCATCGATGCTTTGAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045816XLOC_045816Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073770-proteinTCONS_00073770-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073770-exon-scaffold_97-1491911889:720478..722829TCONS_00073770-exon-scaffold_97-1491911889:720478..722829Clytia hemisphaericaexon
TCONS_00073770-exon-scaffold_97-1510915933:720478..722829TCONS_00073770-exon-scaffold_97-1510915933:720478..722829Clytia hemisphaericaexon
TCONS_00073770-exon-scaffold_97-1575043694:720478..722829TCONS_00073770-exon-scaffold_97-1575043694:720478..722829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:720478..722829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3237	10.5743	6.78555	6.29017	5.51442	3.51075	5.06566	5.14093	1.9531	2.29827	3.11971	1.34513	1.53044	1.42929	1.72031	2.15889	1.96361	3.15907	0.844729	0.976026	1.7287	1.66298	14.8818	11.7004	3.16387	3.96584	1.65713	1.76854	7.22136	8.14371
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
IPR001606ARID_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
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BLAST of TCONS_00073770 vs. Swiss-Prot (Human)
Match: JARD2 (Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.777e-26
Identity = 72/230 (31.30%), Postives = 114/230 (49.57%), Query Frame = -2 
Query:  570 SKKVSIETFHRMACNVAT-CYEIKDMSAETIENHFWKVVNSSNRHTATYAGTLDLLSDPQSYQNAKAKVF----WKLSTVYNHELSALKYLGKVSQVSSPFLLTESVFSTSGFWEIDEYGFYILSYLHSGSDKIWYVIETPESKIEQTKLQKLIDENQI-------HNTFSMPNEILEKGFTVKRCVQKEGQFLILEPNCYYFTISTGYSLSEIINFAPMSWLEDFNGFE 1223
             + VS+ TF+R A N+ + C+  +   AE IE  +W++V   + H A + G +D  +    +   K++ F    W L+ + N+  S L++LG V  V+ P+L    VFSTS  W  D+     + YLH+G+D IWY I   E    +  +  L+  N          N    P  + ++G  V R VQ+ GQF++  P  +   +  GYS+SE ++FA   W     GFE
Sbjct:  817 GRSVSLTTFYRTARNIMSMCFSKEPAPAE-IEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTS-CWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTS--MGFE 1042

HSP 2 Score: 83.9593 bits (206), Expect = 2.042e-16
Identity = 42/162 (25.93%), Postives = 82/162 (50.62%), Query Frame = -2 
Query: 1278 IKPTSNEMSALFPFVGKLFEETESTHRSIVVIQPDQTWKCFSYVQENLKFEVEVYHVHRLKHPAGSNFTTLQCLRKCFEKNEKEPFKIPSVGLVEVDLPYLMEVVSNFGGVDSVNSDQSWKELAEQLHIPRSASRRAIQLEKIYMQYVLPYELLTDAEKSRI 1763
            ++P++ E      ++  +  + E      V+  PD  W+    + + ++F  ++ H+H+L    G N   L C++K  +       ++P +G  E+DL     +++  GG+  V   + W +LA+ L IPR+A  R  +L++ Y QY+L Y+ L+  E  R+
Sbjct:  560 LRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPD--WRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRL 719
The following BLAST results are available for this feature:
BLAST of TCONS_00073770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JARD21.777e-2631.30Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=... [more]
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