TCONS_00073770-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073770-protein
Unique Name	TCONS_00073770-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	709

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073770-protein ID=TCONS_00073770-protein|Name=TCONS_00073770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=709bp
MMRKSFRLRTAKESVGLKDSHKHVHTRTAQRKFASNVHTPFENPVQPIDT
ESVPEVVDQTPPKTEDFINFLCTRDLSYLPKDLEIFANPSNAVIPDEEMD
KFFKDETNLESVIEPHNATPPVNKFQPTLPPTTGDNETHSPATTKHQEKE
PSLEPKLKKPYFIESKEKEPQNSFIMVEEIKPTSNEMSALFPFVGKLFEE
TESTHRSIVVIQPDQTWKCFSYVQENLKFEVEVYHVHRLKHPAGSNFTTL
QCLRKCFEKNEKEPFKIPSVGLVEVDLPYLMEVVSNFGGVDSVNSDQSWK
ELAEQLHIPRSASRRAIQLEKIYMQYVLPYELLTDAEKSRIASAAKNEAR
KHDEKSNICSKKVSIETFHRMACNVATCYEIKDMSAETIENHFWKVVNSS
NRHTATYAGTLDLLSDPQSYQNAKAKVFWKLSTVYNHELSALKYLGKVSQ
VSSPFLLTESVFSTSGFWEIDEYGFYILSYLHSGSDKIWYVIETPESKIE
QTKLQKLIDENQIHNTFSMPNEILEKGFTVKRCVQKEGQFLILEPNCYYF
TISTGYSLSEIINFAPMSWLEDFNGFEFDEDSFIETRMLLNYTNDILKSE
KSTSFNKDFLKEKLDQLKKLILNLQQKCQKAGITRTKYTKNATRDAAHCF
DCECNCYVLVISLPDKPDEFYCNIHGFKLKRSLRTNAVATFLISPTKLSQ
LINRIDALS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045816	XLOC_045816	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073770	TCONS_00073770	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003347	JmjC_dom
IPR001606	ARID_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 607..634
None	No IPR available	SMART	SM01014	ARID_2	coord: 238..331 e-value: 9.1E-15 score: 65.1
None	No IPR available	GENE3D	1.10.150.60		coord: 217..356 e-value: 9.0E-18 score: 63.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..153
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 357..573
IPR003347	JmjC domain	SMART	SM00558	cupin_9	coord: 424..580 e-value: 1.2E-5 score: 34.8
IPR003347	JmjC domain	PFAM	PF02373	JmjC	coord: 463..564 e-value: 1.8E-15 score: 57.3
IPR003347	JmjC domain	PROSITE	PS51184	JMJC	coord: 426..581 score: 15.96
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 242..336 e-value: 3.2E-14 score: 63.2
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 250..331 e-value: 1.6E-12 score: 47.7
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 243..335 score: 19.718
IPR001606	ARID DNA-binding domain	SUPERFAMILY	46774	ARID-like	coord: 226..335

Blast

[Close]

BLAST of TCONS_00073770-protein vs. Swiss-Prot (Human)
Match: JARD2 (Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.477e-27
Identity = 72/230 (31.30%), Postives = 114/230 (49.57%), Query Frame = 0

Query:  360 SKKVSIETFHRMACNVAT-CYEIKDMSAETIENHFWKVVNSSNRHTATYAGTLDLLSDPQSYQNAKAKVF----WKLSTVYNHELSALKYLGKVSQVSSPFLLTESVFSTSGFWEIDEYGFYILSYLHSGSDKIWYVIETPESKIEQTKLQKLIDENQI-------HNTFSMPNEILEKGFTVKRCVQKEGQFLILEPNCYYFTISTGYSLSEIINFAPMSWLEDFNGFE 577
             + VS+ TF+R A N+ + C+  +   AE IE  +W++V   + H A + G +D  +    +   K++ F    W L+ + N+  S L++LG V  V+ P+L    VFSTS  W  D+     + YLH+G+D IWY I   E    +  +  L+  N          N    P  + ++G  V R VQ+ GQF++  P  +   +  GYS+SE ++FA   W     GFE
Sbjct:  817 GRSVSLTTFYRTARNIMSMCFSKEPAPAE-IEQEYWRLVEEKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTS-CWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANGTPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTS--MGFE 1042

HSP 2 Score: 83.5741 bits (205), Expect = 2.051e-16
Identity = 42/162 (25.93%), Postives = 82/162 (50.62%), Query Frame = 0

Query:  180 IKPTSNEMSALFPFVGKLFEETESTHRSIVVIQPDQTWKCFSYVQENLKFEVEVYHVHRLKHPAGSNFTTLQCLRKCFEKNEKEPFKIPSVGLVEVDLPYLMEVVSNFGGVDSVNSDQSWKELAEQLHIPRSASRRAIQLEKIYMQYVLPYELLTDAEKSRI 341
            ++P++ E      ++  +  + E      V+  PD  W+    + + ++F  ++ H+H+L    G N   L C++K  +       ++P +G  E+DL     +++  GG+  V   + W +LA+ L IPR+A  R  +L++ Y QY+L Y+ L+  E  R+
Sbjct:  560 LRPSAKEFHDPLIYIESVRAQVEKFGMCRVIPPPD--WRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRL 719

The following BLAST results are available for this feature:

BLAST of TCONS_00073770-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073770-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
JARD2	3.477e-27	31.30	Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=...	[more]

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TCONS_00073770-protein (polypeptide) - C. hemisphaerica