TCONS_00073716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073716
Unique NameTCONS_00073716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073716 ID=TCONS_00073716|Name=TCONS_00073716|organism=Clytia hemisphaerica|type=transcript|length=1156bp
ATCAATTGTTATTATTCAGTTTTTGGGGTTTTAAGAATTAAACTTTAACC
CGGAAACCTTAAAAACGCCCGGTCGGTTCACGATTTCTTGGAACTAGACG
TAAACAAAGAGCGAAGCGAGCGCATAAGAAGCGTCAGACGTTTTTATGGT
TTTTTACCCAAAAGAAATAAAATGGATCTCAAGTGGAACTTTTTAACTAT
TTTACTCCTTGAAATCATCTTTCTTTTACACCATGGATGGAAAGCCGATG
CAACTCTTtcgaaatcaaagaaaaagaaagacacCTGTAAAAGCAATGAC
TGCAAAGAAAAGATGCAGAAAGTGGTTGGTCCAATCACTTCATCAGTGTT
CACAAATAATCTGGTCAGCAAAAACATTAAGTATCAAGATATTTTGAAAT
ACAACAAAGCCTATTTTGATGATGTTTATGAAAGGAAGTTCATGGGTGAT
GTCCTTGGTTATGTTACACCTtggaatAATCATGGATATGATGTTGCCAA
AACATTCCCAAAGTTTACCTTAATTTCACCAGTCTGGTTACAAATTTTGC
AACCACAGCTTGGAGTTTACAAAATCAAGGGTACGCATGACATTGATGAG
AAATGGATAAGAGATGTTCGAAATAAAAACCATTTAGCTAAAATTGTACC
AAGGATGCTTTTAGATGGATGGAGTTTGGAAGGATTTGTTTctttattca
gtcaaagccaatACATGTATAAGTTTGTGGATACTATTGTCAATTTTGTG
GATGAAAGAAATTTGGATGGTATTGTATTGGAGATATGGTCACAACTTGG
TGGGAATTATAAATCAGAAGCATCACAACTGATCAAAGAGCTTGGGGAAG
CAATGATGTCACGAAAACAAAAACTTATACTGGTCATTCCACCGCCTTTG
GCTGCCAGAGATACACCAGGAATGTTTGATCGTAACGATTTTGAACTTTT
GGCACCAATCGTTGATGGGTTTAGTTTGATGACGTATGATTATCCTCACT
ATGGAAGcCCAGGAGCTGTTGCACCGTATGATTGGATTAAAGATTGCGTA
GAAAATCTTGTTCCAGAAAAAACATTATTTCGTCAAAAATTATTACTGGG
GTTGAACTTTTATGGATATACTTATAAAGGAAGAAGTCAAACACCTATCG
TTGGCC
Run BLAST on NCBI

protein sequence of TCONS_00073716-protein

>TCONS_00073716-protein ID=TCONS_00073716-protein|Name=TCONS_00073716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MDLKWNFLTILLLEIIFLLHHGWKADATLSKSKKKKDTCKSNDCKEKMQK
VVGPITSSVFTNNLVSKNIKYQDILKYNKAYFDDVYERKFMGDVLGYVTP
WNNHGYDVAKTFPKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVR
NKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDG
IVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLAARDTPG
MFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEK
TLFRQKLLLGLNFYGYTYKGRSQTPIVG
Run BLAST on NCBI

transcript from alignment at scaffold_97:352802..361049-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073716 ID=TCONS_00073716|Name=TCONS_00073716|organism=Clytia hemisphaerica|type=transcript|length=8248bp|location=Sequence derived from alignment at scaffold_97:352802..361049- (Clytia hemisphaerica)
ATCAATTGTTATTATTCAGTTTTTGGGGTTTTAAGAATTAAACTTTAACC
CGGAAACCTTAAAAACGCCCGGTCGGTTCACGATTTCTTGGAACTAGACG
TAAACAAAGAGCGAAGCGAGCGCATAAGAAGCGTCAGACGTTTTTATGGT
TTTTTACCCAAAAGAAATAAAATGGATCTCAAGTGGAACTTTTTAACTAT
TTTACTCCTTGAAATCATCTTTCTTTTACACCATGGATGGAAAGCCGATG
CAACTCTTTCGAAATCAAAGAAAAAGAAAGACACCTGTAAAAGCAATGAC
TGCAAAGAAAAGATGCAGAAAGTGGTATGCGAAAGATCTAGCTTTTTTAT
AAATACTTTTTATTTTTGTACGCTACTAAACAAATATTCAGATATTTTGA
AAAATTTCTTCAGCTGATTTTTGGAATTTTATGACAGGCTAGCTAGCTCT
AAAAGCTCTAAAACAGCATATGCTAGCATCTAATAACATGAAAACCAGAA
TATGATTCTTCAATGGGAATCAAAACTATAAAGTGCACTTACAAACATCA
GTTTGTCAGACCTAACAAAATTAATAACCGCACTGTCATCATTGACAATA
AAACAAACAATTTTCTGTCAAGAGCCTTGTAAACATCCAGACGATGTCGA
TCGAACGAATCGAACGCCGAATCAATTGAACGCAATCGAACGCAATCGAA
TGATTGAAATTCGATTGCCGAACGCAATCGAATGCCAATCGAATATTACC
GCGATTTTCTCGATTGATTAGATTGCGTTCGATTAGTGCCTGGATTTGAT
AGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGCA
GAAAAGCAATGATGCGTAATTATTACAATATGCATGATAAAGTACACTAT
CATTGTTTCTATGGCTGGACTACATAATTATTCAACAGGACGTCCTCTTT
GAAAAAAGGTCTATTGATTCGATTGATTCGATTGCGTTCGATTGACTAAT
GTATTCGATTGATTCAACTACGTTCGGTTGGCTTATGCATTCGACTGGTT
CGACTAATTGATTTGATTCTCGTTCAACATTTGAATAGTTAAACGAGATG
ATATGAATCATTTTAGCCTGGATTCTAGAAAATGCAGATCATGCAGGCCC
ACATGTTTACTGCAAGTTGTGTGTCAAAGCCCGTTCGTTGCGTTGATTGA
TCTATCGTATCGCGATACTTAACCTCCCTAATAAGAGGCGCTCGAAATTG
AAAGGAATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTA
GTCCAGCAGAAAAACAATGATAAAACCATGCTTAATTATTACAATATGCA
TGATATAGTAATTATGCATGGCTCTATCATTGTTTTTTATGGCTGGACTA
CATAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTCTATTGAGGTAA
ATTGGAATCTAATTTAATCAACCACCCGTCGAATGCAGTCGAACGTAATC
GAACATCAATCAACGTAATCAAATATCAATCGAACGTAATCGAATATCAA
TCGAATCAATCGAATTTTACCCAGAATTTTACGTTCGATTGATATTCGAT
TGCGTTCGGCAATCGAATCGCAATCATTCGATTGCGTTCGATTGCGTTCG
ATTGATTCGATTGGAATTTTCGTTCGATTCCGTTCGATTGACATCGTCTG
GAAACATTCCAACAACTTCCATCGAAATGATCTATCACGGCTCAGTCTAC
CATTTTTAGGATTGAGACGAGAATGCTTGCAGAACGCCTGCAGAACGCCT
GCGAGCTCCAGCGCGTGTGAAAAACTTCAATCTGTCAATCATTTTCTCAT
ACTGAATTTGAAAGATCTTCTAGTATATATGTGGCGTTTTTTTTGCAAAC
TTCAAACAACTGATTTTTGTTCCGCCTTTGTGGGACTTTGCTTGGCTTAA
GTGCTTGGGTGCAGCATAGGGTACAAAGTCTAAACATGCGTCTCCCGTAA
TTTTTGAAGAGTTAGGTCTATACTGTATGGTGAAGCACGCACATGCAAGT
CGGTTGGGGTTGGGTTATTCAGACCTGCCATCTTTCTTACCGTCTTACTT
GCTTACTTGGGACGATTGGTCGAAACATGGGACTGTTGATATCTGGCCTG
TATTTTCACTCACTGTTAAATCTCTTTGACAATAAATTTGTTTTGATAAC
TCCACCAAGTTTATCAATCATACTTTCACTGATAGCGCGCCCTTTTCTGT
TTTCATTCAAAATGACCGGACGCAGATTGGAGAATTAGAGAACGTCTGCC
GCCTATCGCCCGATGGGATTAACAAATAACGAGTGTGTAACTTGCTGTGC
GAGTGTGTGCGAGTGACGTCAGACGCTCCATCGTTTTGCCTCTAATTTGT
TCTTCTTCGTTCACGACACTCGCGTATGTTTCGCTAGGGATTTTTTTCAT
ATTTCCATTTAAAAGCCTACTCGGTGCGAAAGAGAAATTGTGTATTTTTT
AATACGCCGTTCATTAAATCAAATCAATTGCCGTCCCATGTTTTGTCAGA
TAGTCCCTGCCAAGTTAGAGCAGTTGACGGTAGCTGTCAACTCTCCTGCA
TGCCAATGTTTTCTCCCACGGAAATTGTGTATTTTTTAATACGCCGTTCA
TTAAATCAAATCAATTGCCGTCCCATGTTTTGTCAGATAGTCCCTGCCAA
GTTAGAGCAGTTGACGGTAGCTGTCAACTCTCCTGCATGCCAATGTTTTC
TCCCACGGAAATTGTGTATTTTTTAATACGCCGTTCATTAACTCAAATCA
ATTGCCGTCCCATGTTTTGTCAGATAGTCCCTGCCAAGTTAGAAAGAGAA
ATTGTGTATTTTTTAATACGCCGTTCATTAACTCAAATCAATTGCCGTCC
CATGTTTTGTCAGATAGTCCCTGCCAAGTTAGAGCAGTTGACGGTAGCTG
TCAACTCTCCTGCATGCCAATGTTTTCTCCCACGGGAAAAAATTCAGTCA
GATCTCAAGCATTTTCAAGATTTTCTCCAGCATCTCCGGCATTTCCAAAA
ATTTCCTGAAAAAAATTCAGATTTTGAAAAAACAGAATGGCAAAATTTCC
TGATCTTGGAAAATTAGGACAAAAAAATCCCCGAGTTCTCCCCCTATACC
ACTAGGCTTTATAATTTGATTTTAACTACACCTACGTTTTGAGGGCCCTA
AACCTGCGTTTTGACAACCAGGGGTATGCCGTGAAAATTTCTATCAAACT
AATTTATGCCCAAAACCCTCTAAATCACGTTTCCAAACTATGGTCAAAAT
TTTATATTCACATCTTAAAGATATCTGGAGAAATCGCTAAAATTGCAAAC
CTCTGTTTTGGGGGCCATTAGAAAAAAGCTACCTCTCTTTAAGCGATTGA
AATATTGTTGAAATTGAAGGTTTTGAAAAAGAACTTCCGGGAAATAAAGT
AGAGATGTTAAAGTTTTTCATGCAGCAAAAATTTTTGTAAAACCTTTTTT
CCTCTAGATTTCAGAGAAATTTTAAATTTGATCGACGTTTTGGGGGCCAC
ATACTGTATAAAAAATGTGTGAGAAATCAAACTTTTCAAACATTGCATAA
GACAGTGTGGAATATAGGCCAAGGATCACAAATAAATTGTGTTTGTGTTG
CTTGACCGACTGATACATGATAATCTTTCTTAATTCTCCAATTCTTTTGA
TTCAGAAGGTTGCAAAATTTCCTATAGGTTAGCGGAAATGTGTTATTATG
TCCCTAGTCATAAAAACAGAGATATTACATTTGAAAAAAGATGACCTGTA
TTGTGAAACTCAAGGACAGCATTGACGGACCATCTACATAAACAAGGCAA
AACTGTGAGCAAATGTGAGCCGTTTACTTACATTTTTTGATAGTTTGGAA
ATCTATTATGCCGACTGACTCTTTTTTTTTTTACCTAAAAATGATGCAAA
CACAAGTTATCGGTGATGGTGGCCTAATTATCCTATGGATAGGATTTAGG
GCTTGGTAGTTAAGAAGGGGTTTGGTTGAAATGACTGAAATGACTGGCTA
AACCAAAGATTTATCTACTTTTCTATCAACAAGAATCTCTTGGATCATTT
GAAAATTTCTTTATTATATATACAGGTTGGTCCAATCACTTCATCAGTGT
TCACAAATAATCTGGTCAGCAAAAACATTAAGTATCAAGATATTTTGAAA
TACAACAAAGCCTATTTTGATGATGTTTATGAAAGGAAGTTCATGGGTGA
TGTCCTTGGTTATGTTACACCTGTAAGTATGAGTTCTGTCACTTCAGAAG
GTCAGAAAAGTGTTGGAGATATTAAGTTCGCAGTTCGGTGCCTTTTAAAC
GTCCCACTCCCTGTTTATTAATTTATTAGAGCTTATTAGGATCACCTTTT
TATAATATAGACTAAGCAAAAAAAAATTAACTAATTTTATGCTTCAAACT
CCATCAGCCCTGAGATATGTAAAACCCTCAAAAGCCCTAAAACAAAACAA
CTGTATAAGAGATCGTACTTTGTGTGCATCTCCCATGTCCCTTAGCTTTT
GATGTTCTTGACTTTCTCACTTTTTTGAGCCTAAAAATGTTCTTAATTTC
ACCATTTTTTGAACATGTTTGTGCAATTTCCTAAAATTGGGCATTTTAGA
GTCCCTTAATAAGCCTTAAAATGTTCTTAACCTATTCTTAATATTTTAGC
CATTTGCTCTTACAGTATAGTAGGGGGGAGTTTGTTCGATTTTTTGAGGT
CGTTCGACTTTTTTAGTCAAAGCACTTGGTATTCCAAAAATGAATAAGAA
GTGCTTTGACTAAAAAAGTCGATCGATTTTGTAGAGCTGAAATTTCACTT
TCCTTTCTTCCGTTTTAATTTCCCTTTTTCCTTTTTTTTTCAGTGGAATA
ATCATGGATATGATGTTGCCAAAACATTCCCAAAGTTTACCTTAATTTCA
CCAGTCTGGTTACAAATTTTGCAACCACAGCTTGGAGTTTACAAAATCAA
GGGTACGCATGACATTGATGAGAAATGGATAAGAGATGTTCGAAATAAAA
ACCATTTAGCTAAAATTGTACCAAGGATGCTTTTAGATGGATGGAGTTTG
GAAGGATTTGTTTCTTTATTCAGTCAAAGCCAATACATGTATAAGTTTGT
GGATACTATTGTCAATTTTGTGGATGAAAGAAATTTGGATGGTATTGTAT
TGGAGATATGGTCACAACTTGGTGGGAATTATAAATCGTGAGCAACATTT
TATGCTTTTGCTATCTATCTATTTTTCTTTTCTAAGATGTGTTTACTTGT
TTGATAAAATCTTCTTTTTTATTGATAATTTGGACATTTCATAGCAGGAC
CTGTATATATATTTTTAAACCAAGCGACTATACAAAGCTCAACACTTAGT
GTTTTGATCACTTTAGTGCGACAGCAGTCTATGCTAGCTTACTCGAGCCT
CGTTGATGAGTCCTAGGAAGGACGAAGCACGTGTCTGTGGTTAAATATAA
CATTTTTAACCACGATATCATGTTATTTTTGTTCTCTTATGTAGAGAAGC
ATCACAACTGATCAAAGAGCTTGGGGAAGCAATGATGTCACGAAAACAAA
AACTTATACTGGTCATTCCACCGCCTTTGGCTGCCAGGTATGATGATTTT
GACATAACTTCAATCGGATAGATTTTTGCGAGATTTGGTTTTGCGCGTTC
GCGAATTTTTTCATTCGAATTACGGAAAATCTTTGTTAGAAATTTCCAAA
ATGAGGTTTGATAGGCCCTATACAATTGGTTGTATGATCAGAACACTTGT
GCCTTGGACTTCAAATAAACGCCCCTTTNGGTCTAAGTCCGTTCACCCGC
ATACCATATTACTTCAAATAAACGCCCCTTCTTTAAACGCCCCCTCATAA
AACAATTTTATAGAAAAATTTAATGAACGCCAGGGGCGTTTATCGAAGTA
GGTATCGAAGGTATTGTCAAATTTCGAATTTTGCGTGCAGCCTAGCGTAG
TGCTAGCGTGCCGGGCTCAGAATTGCTCATGAAATAACTTAACTTGTTCG
AGTCAAATCTAGGGTTTTGTCTCGAGGTGTTCTGAGCATTTAGTTACGTG
TTACCAAATGTTTTCATTGACTTAAATAAATTTTAAAATTTAGAGAAAAT
AGATCGCTTTGTTCGTGAAATTCCTCGACCATCTTTCCCATTTTTTTCAA
CATACAGAGATACACCAGGAATGTTTGATCGTAACGATTTTGAACTTTTG
GCACCAATCGTTGATGGGTTTAGTTTGATGACGTATGATTATCCTCACTA
TGGAAGGTAAGAAAGTACAACATCTGTTCTGTGATCACAGATCAACCTCG
TCCCCGTGTATTCAAGGCACGTGACCAAGCTTTTTTAAATATTTATCGAA
GCAAATACACATGTACACTACGAACATATATTACAAAACACTACTTAAAC
ATAAAATATAGTCCCTCACCCCGCTAGGAACTAACGTTATATCGCCACGC
TTTATCTAACTTCCATCTTTGATCAGAGTTTCTTTTAAGTGGTATCCGCA
AAGAAGCCATTGCAGTGTTAAAAATCAACTTCTAACTACGCTGTATCATC
AAAATTATTCAAGGAAAAGTAGATTTAGTGCTCTCGATGCATTTACAATG
CTATTGAGTAGTGCTACAATTAGGGTACCACTTTCAAGAAAACTCCGATC
AAATATTTTACTTGACCATTTTACTTGGGTTGAGAAACTTGATCTCTAGG
GTATATAAAGGTCAATGACTCCAGGTTTTATTTACCTTAAGGCCGGTTTT
CACTTGCGCGTGCTACGATCGCACCTTTTAGCTTCAATCGTCATAAAAAT
GTAGCGTGCGCTCGAAAAAAAAATTGACTCCATTACGTCAGGTCGCGCCA
ATAGAATTGTTTCATTTTTCTTTTGACCAATAGAGTGGAAGCTTTGTTCG
AAAAAGTGTGATCGAAGCGCGCGCAAGTGGAGACCGGCCTTTACAGACAT
TGCAAAGTAATGATCGTTACACTGCAATGCAACAGCTTTAAAATATAAGA
ACAAATGAAATCTGACAAAATGAAATCTACTGAAATTTTCCTCTTTGACG
ATAAGGATAAAATTTACTGTAGAAATTATGCGAAGTTCCATCAATTGTGG
TTTCAGTACATTTGAACGATTAAAACTTTTATGCACCGAAAACTTGAATT
TTCTACTTAAAACATACCTAATTCGCGAGCATAAACAAAGCAAAAGTTTA
TACTCGTCGCGAAAAAATTTTATGTCAAATTCGCAAAAGTAAATGTCGTA
GATTTCGCAATTTTTCGACCTCGCGAAGGTTTGTACGCCTAAAGTAGGTC
CATTCAGCATGTATGGTAACTTGTTTTCTTTTTTATATCTTTTAGCCCAG
GAGCTGTTGCACCGTATGATTGGATTAAAGATTGCGTAGAAAATCTTGTT
CCAGAAAAAACATTATTTCGTCAAAAATTATTACTGGGGTTGAACTTTTA
TGGATATACTTATAAAGGAAGAAGTCAAACACGTAAGTAACCCTTGGCGC
TTTTTTCAAAAATGGTTATTTTGCAAAATGCATAAGTATTTCTTTTTTAA
TTTTTTTAAAGTTTTTTCTCGAAAGCATTTTGTTTTGAGGGCACTTTCAA
GCAATCTAGAGCTCAATCTTCAAAACTTTCCCTAAACTGTGTCGGTGTCA
CTAAACTTCAGCTCCCCAATATGAAAATGCTTCCTACGGCACTGCTGTTA
TTGTTATTGGAATACCGTTATCACATTATCGCACAATGAGCTATTTTTTC
TTATTTGGCGCTCCTTCAAAGGGAGCAATTAATCATTAATCACACTCTTC
GATGCCGCACCAATGCTTACAAAATACTACATAGTAAATCATACTTATCC
TACTTGAAACCTCTGAAATCTACACAGCCAGAACAATAAAACATGATTGC
GTTCTGAAAATTGTATTATTTCAAAGATTACCTTATTACACAAATATTAC
TAGGCTAGTATTTAATAAAATGACTAGTAATATTCGTGTAATAAGGTAAT
ATAAAAATCGATCTATAAAGAGAAGAACAACAATGTTATTTTATTTAAGT
GTCTTGGACTGTTTGAAACGGATAGTTAGAACAAACTTTCTAACGATTAG
ATTTCTTAGGTCAAAATTATGAATTTAGGCTTGGAATTTTAGACTTAATC
ACTATAAACTATGTTTCTACTTTTTTTCTGTTTCAGCTATCGTTGGCC

Coding sequence (CDS) from alignment at scaffold_97:352802..361049-

>TCONS_00073716 ID=TCONS_00073716|Name=TCONS_00073716|organism=Clytia hemisphaerica|type=CDS|length=6888bp|location=Sequence derived from alignment at scaffold_97:352802..361049- (Clytia hemisphaerica)
CTATCGTTGGCCCCAGGAGCTGTTGCACCGTATGATTGGATTAAAGATTG
CGTAGAAAATCTTGTTCCAGAAAAAACATTATTTCGTCAAAAATTATTAC
TGGGGTTGAACTTTTATGGATATACTTATAAAGGAAGAAGTCAAACACAG
ATACACCAGGAATGTTTGATCGTAACGATTTTGAACTTTTGGCACCAATC
GTTGATGGGTTTAGTTTGATGACGTATGATTATCCTCACTATGGAAGAGA
AGCATCACAACTGATCAAAGAGCTTGGGGAAGCAATGATGTCACGAAAAC
AAAAACTTATACTGGTCATTCCACCGCCTTTGGCTGCCAGTGGAATAATC
ATGGATATGATGTTGCCAAAACATTCCCAAAGTTTACCTTAATTTCACCA
GTCTGGTTACAAATTTTGCAACCACAGCTTGGAGTTTACAAAATCAAGGG
TACGCATGACATTGATGAGAAATGGATAAGAGATGTTCGAAATAAAAACC
ATTTAGCTAAAATTGTACCAAGGATGCTTTTAGATGGATGGAGTTTGGAA
GGATTTGTTTCTTTATTCAGTCAAAGCCAATACATGTATAAGTTTGTGGA
TACTATTGTCAATTTTGTGGATGAAAGAAATTTGGATGGTATTGTATTGG
AGATATGGTCACAACTTGGTGGGAATTATAAATCGTTGGTCCAATCACTT
CATCAGTGTTCACAAATAATCTGGTCAGCAAAAACATTAAGTATCAAGAT
ATTTTGAAATACAACAAAGCCTATTTTGATGATGTTTATGAAAGGAAGTT
CATGGGTGATGTCCTTGGTTATGTTACACCTATGGATCTCAAGTGGAACT
TTTTAACTATTTTACTCCTTGAAATCATCTTTCTTTTACACCATGGATGG
AAAGCCGATGCAACTCTTTCGAAATCAAAGAAAAAGAAAGACACCTGTAA
AAGCAATGACTGCAAAGAAAAGATGCAGAAAGTGCTATCGTTGGCCCCAG
GAGCTGTTGCACCGTATGATTGGATTAAAGATTGCGTAGAAAATCTTGTT
CCAGAAAAAACATTATTTCGTCAAAAATTATTACTGGGGTTGAACTTTTA
TGGATATACTTATAAAGGAAGAAGTCAAACACAGATACACCAGGAATGTT
TGATCGTAACGATTTTGAACTTTTGGCACCAATCGTTGATGGGTTTAGTT
TGATGACGTATGATTATCCTCACTATGGAAGAGAAGCATCACAACTGATC
AAAGAGCTTGGGGAAGCAATGATGTCACGAAAACAAAAACTTATACTGGT
CATTCCACCGCCTTTGGCTGCCAGTGGAATAATCATGGATATGATGTTGC
CAAAACATTCCCAAAGTTTACCTTAATTTCACCAGTCTGGTTACAAATTT
TGCAACCACAGCTTGGAGTTTACAAAATCAAGGGTACGCATGACATTGAT
GAGAAATGGATAAGAGATGTTCGAAATAAAAACCATTTAGCTAAAATTGT
ACCAAGGATGCTTTTAGATGGATGGAGTTTGGAAGGATTTGTTTCTTTAT
TCAGTCAAAGCCAATACATGTATAAGTTTGTGGATACTATTGTCAATTTT
GTGGATGAAAGAAATTTGGATGGTATTGTATTGGAGATATGGTCACAACT
TGGTGGGAATTATAAATCGTTGGTCCAATCACTTCATCAGTGTTCACAAA
TAATCTGGTCAGCAAAAACATTAAGTATCAAGATATTTTGAAATACAACA
AAGCCTATTTTGATGATGTTTATGAAAGGAAGTTCATGGGTGATGTCCTT
GGTTATGTTACACCTATGGATCTCAAGTGGAACTTTTTAACTATTTTACT
CCTTGAAATCATCTTTCTTTTACACCATGGATGGAAAGCCGATGCAACTC
TTTCGAAATCAAAGAAAAAGAAAGACACCTGTAAAAGCAATGACTGCAAA
GAAAAGATGCAGAAAGTGCTATCGTTGGCCCCAGGAGCTGTTGCACCGTA
TGATTGGATTAAAGATTGCGTAGAAAATCTTGTTCCAGAAAAAACATTAT
TTCGTCAAAAATTATTACTGGGGTTGAACTTTTATGGATATACTTATAAA
GGAAGAAGTCAAACACAGATACACCAGGAATGTTTGATCGTAACGATTTT
GAACTTTTGGCACCAATCGTTGATGGGTTTAGTTTGATGACGTATGATTA
TCCTCACTATGGAAGAGAAGCATCACAACTGATCAAAGAGCTTGGGGAAG
CAATGATGTCACGAAAACAAAAACTTATACTGGTCATTCCACCGCCTTTG
GCTGCCAGTGGAATAATCATGGATATGATGTTGCCAAAACATTCCCAAAG
TTTACCTTAATTTCACCAGTCTGGTTACAAATTTTGCAACCACAGCTTGG
AGTTTACAAAATCAAGGGTACGCATGACATTGATGAGAAATGGATAAGAG
ATGTTCGAAATAAAAACCATTTAGCTAAAATTGTACCAAGGATGCTTTTA
GATGGATGGAGTTTGGAAGGATTTGTTTCTTTATTCAGTCAAAGCCAATA
CATGTATAAGTTTGTGGATACTATTGTCAATTTTGTGGATGAAAGAAATT
TGGATGGTATTGTATTGGAGATATGGTCACAACTTGGTGGGAATTATAAA
TCGTTGGTCCAATCACTTCATCAGTGTTCACAAATAATCTGGTCAGCAAA
AACATTAAGTATCAAGATATTTTGAAATACAACAAAGCCTATTTTGATGA
TGTTTATGAAAGGAAGTTCATGGGTGATGTCCTTGGTTATGTTACACCTA
TGGATCTCAAGTGGAACTTTTTAACTATTTTACTCCTTGAAATCATCTTT
CTTTTACACCATGGATGGAAAGCCGATGCAACTCTTTCGAAATCAAAGAA
AAAGAAAGACACCTGTAAAAGCAATGACTGCAAAGAAAAGATGCAGAAAG
TGCTATCGTTGGCCCCAGGAGCTGTTGCACCGTATGATTGGATTAAAGAT
TGCGTAGAAAATCTTGTTCCAGAAAAAACATTATTTCGTCAAAAATTATT
ACTGGGGTTGAACTTTTATGGATATACTTATAAAGGAAGAAGTCAAACAC
AGATACACCAGGAATGTTTGATCGTAACGATTTTGAACTTTTGGCACCAA
TCGTTGATGGGTTTAGTTTGATGACGTATGATTATCCTCACTATGGAAGA
GAAGCATCACAACTGATCAAAGAGCTTGGGGAAGCAATGATGTCACGAAA
ACAAAAACTTATACTGGTCATTCCACCGCCTTTGGCTGCCAGTGGAATAA
TCATGGATATGATGTTGCCAAAACATTCCCAAAGTTTACCTTAATTTCAC
CAGTCTGGTTACAAATTTTGCAACCACAGCTTGGAGTTTACAAAATCAAG
GGTACGCATGACATTGATGAGAAATGGATAAGAGATGTTCGAAATAAAAA
CCATTTAGCTAAAATTGTACCAAGGATGCTTTTAGATGGATGGAGTTTGG
AAGGATTTGTTTCTTTATTCAGTCAAAGCCAATACATGTATAAGTTTGTG
GATACTATTGTCAATTTTGTGGATGAAAGAAATTTGGATGGTATTGTATT
GGAGATATGGTCACAACTTGGTGGGAATTATAAATCGTTGGTCCAATCAC
TTCATCAGTGTTCACAAATAATCTGGTCAGCAAAAACATTAAGTATCAAG
ATATTTTGAAATACAACAAAGCCTATTTTGATGATGTTTATGAAAGGAAG
TTCATGGGTGATGTCCTTGGTTATGTTACACCTATGGATCTCAAGTGGAA
CTTTTTAACTATTTTACTCCTTGAAATCATCTTTCTTTTACACCATGGAT
GGAAAGCCGATGCAACTCTTTCGAAATCAAAGAAAAAGAAAGACACCTGT
AAAAGCAATGACTGCAAAGAAAAGATGCAGAAAGTGCTATCGTTGGCCCC
AGGAGCTGTTGCACCGTATGATTGGATTAAAGATTGCGTAGAAAATCTTG
TTCCAGAAAAAACATTATTTCGTCAAAAATTATTACTGGGGTTGAACTTT
TATGGATATACTTATAAAGGAAGAAGTCAAACACAGATACACCAGGAATG
TTTGATCGTAACGATTTTGAACTTTTGGCACCAATCGTTGATGGGTTTAG
TTTGATGACGTATGATTATCCTCACTATGGAAGAGAAGCATCACAACTGA
TCAAAGAGCTTGGGGAAGCAATGATGTCACGAAAACAAAAACTTATACTG
GTCATTCCACCGCCTTTGGCTGCCAGTGGAATAATCATGGATATGATGTT
GCCAAAACATTCCCAAAGTTTACCTTAATTTCACCAGTCTGGTTACAAAT
TTTGCAACCACAGCTTGGAGTTTACAAAATCAAGGGTACGCATGACATTG
ATGAGAAATGGATAAGAGATGTTCGAAATAAAAACCATTTAGCTAAAATT
GTACCAAGGATGCTTTTAGATGGATGGAGTTTGGAAGGATTTGTTTCTTT
ATTCAGTCAAAGCCAATACATGTATAAGTTTGTGGATACTATTGTCAATT
TTGTGGATGAAAGAAATTTGGATGGTATTGTATTGGAGATATGGTCACAA
CTTGGTGGGAATTATAAATCGTTGGTCCAATCACTTCATCAGTGTTCACA
AATAATCTGGTCAGCAAAAACATTAAGTATCAAGATATTTTGAAATACAA
CAAAGCCTATTTTGATGATGTTTATGAAAGGAAGTTCATGGGTGATGTCC
TTGGTTATGTTACACCTATGGATCTCAAGTGGAACTTTTTAACTATTTTA
CTCCTTGAAATCATCTTTCTTTTACACCATGGATGGAAAGCCGATGCAAC
TCTTTCGAAATCAAAGAAAAAGAAAGACACCTGTAAAAGCAATGACTGCA
AAGAAAAGATGCAGAAAGTGCTATCGTTGGCCCCAGGAGCTGTTGCACCG
TATGATTGGATTAAAGATTGCGTAGAAAATCTTGTTCCAGAAAAAACATT
ATTTCGTCAAAAATTATTACTGGGGTTGAACTTTTATGGATATACTTATA
AAGGAAGAAGTCAAACACAGATACACCAGGAATGTTTGATCGTAACGATT
TTGAACTTTTGGCACCAATCGTTGATGGGTTTAGTTTGATGACGTATGAT
TATCCTCACTATGGAAGAGAAGCATCACAACTGATCAAAGAGCTTGGGGA
AGCAATGATGTCACGAAAACAAAAACTTATACTGGTCATTCCACCGCCTT
TGGCTGCCAGTGGAATAATCATGGATATGATGTTGCCAAAACATTCCCAA
AGTTTACCTTAATTTCACCAGTCTGGTTACAAATTTTGCAACCACAGCTT
GGAGTTTACAAAATCAAGGGTACGCATGACATTGATGAGAAATGGATAAG
AGATGTTCGAAATAAAAACCATTTAGCTAAAATTGTACCAAGGATGCTTT
TAGATGGATGGAGTTTGGAAGGATTTGTTTCTTTATTCAGTCAAAGCCAA
TACATGTATAAGTTTGTGGATACTATTGTCAATTTTGTGGATGAAAGAAA
TTTGGATGGTATTGTATTGGAGATATGGTCACAACTTGGTGGGAATTATA
AATCGTTGGTCCAATCACTTCATCAGTGTTCACAAATAATCTGGTCAGCA
AAAACATTAAGTATCAAGATATTTTGAAATACAACAAAGCCTATTTTGAT
GATGTTTATGAAAGGAAGTTCATGGGTGATGTCCTTGGTTATGTTACACC
TATGGATCTCAAGTGGAACTTTTTAACTATTTTACTCCTTGAAATCATCT
TTCTTTTACACCATGGATGGAAAGCCGATGCAACTCTTTCGAAATCAAAG
AAAAAGAAAGACACCTGTAAAAGCAATGACTGCAAAGAAAAGATGCAGAA
AGTGCTATCGTTGGCCCCAGGAGCTGTTGCACCGTATGATTGGATTAAAG
ATTGCGTAGAAAATCTTGTTCCAGAAAAAACATTATTTCGTCAAAAATTA
TTACTGGGGTTGAACTTTTATGGATATACTTATAAAGGAAGAAGTCAAAC
ACAGATACACCAGGAATGTTTGATCGTAACGATTTTGAACTTTTGGCACC
AATCGTTGATGGGTTTAGTTTGATGACGTATGATTATCCTCACTATGGAA
GAGAAGCATCACAACTGATCAAAGAGCTTGGGGAAGCAATGATGTCACGA
AAACAAAAACTTATACTGGTCATTCCACCGCCTTTGGCTGCCAGTGGAAT
AATCATGGATATGATGTTGCCAAAACATTCCCAAAGTTTACCTTAATTTC
ACCAGTCTGGTTACAAATTTTGCAACCACAGCTTGGAGTTTACAAAATCA
AGGGTACGCATGACATTGATGAGAAATGGATAAGAGATGTTCGAAATAAA
AACCATTTAGCTAAAATTGTACCAAGGATGCTTTTAGATGGATGGAGTTT
GGAAGGATTTGTTTCTTTATTCAGTCAAAGCCAATACATGTATAAGTTTG
TGGATACTATTGTCAATTTTGTGGATGAAAGAAATTTGGATGGTATTGTA
TTGGAGATATGGTCACAACTTGGTGGGAATTATAAATCGTTGGTCCAATC
ACTTCATCAGTGTTCACAAATAATCTGGTCAGCAAAAACATTAAGTATCA
AGATATTTTGAAATACAACAAAGCCTATTTTGATGATGTTTATGAAAGGA
AGTTCATGGGTGATGTCCTTGGTTATGTTACACCTATGGATCTCAAGTGG
AACTTTTTAACTATTTTACTCCTTGAAATCATCTTTCTTTTACACCATGG
ATGGAAAGCCGATGCAACTCTTTCGAAATCAAAGAAAAAGAAAGACACCT
GTAAAAGCAATGACTGCAAAGAAAAGATGCAGAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045772XLOC_045772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073716-proteinTCONS_00073716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073716-exon-scaffold_97-1575043694:360726..361049TCONS_00073716-exon-scaffold_97-1575043694:360726..361049Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:356778..356924TCONS_00073716-exon-scaffold_97-1575043694:356778..356924Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:355813..356156TCONS_00073716-exon-scaffold_97-1575043694:355813..356156Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:355413..355505TCONS_00073716-exon-scaffold_97-1575043694:355413..355505Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:354744..354842TCONS_00073716-exon-scaffold_97-1575043694:354744..354842Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:353518..353654TCONS_00073716-exon-scaffold_97-1575043694:353518..353654Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1575043694:352802..352813TCONS_00073716-exon-scaffold_97-1575043694:352802..352813Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:360726..361049TCONS_00073716-exon-scaffold_97-1510915933:360726..361049Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:356778..356924TCONS_00073716-exon-scaffold_97-1510915933:356778..356924Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:355813..356156TCONS_00073716-exon-scaffold_97-1510915933:355813..356156Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:355413..355505TCONS_00073716-exon-scaffold_97-1510915933:355413..355505Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:354744..354842TCONS_00073716-exon-scaffold_97-1510915933:354744..354842Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:353518..353654TCONS_00073716-exon-scaffold_97-1510915933:353518..353654Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1510915933:352802..352813TCONS_00073716-exon-scaffold_97-1510915933:352802..352813Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:360726..361049TCONS_00073716-exon-scaffold_97-1491911889:360726..361049Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:356778..356924TCONS_00073716-exon-scaffold_97-1491911889:356778..356924Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:355813..356156TCONS_00073716-exon-scaffold_97-1491911889:355813..356156Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:355413..355505TCONS_00073716-exon-scaffold_97-1491911889:355413..355505Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:354744..354842TCONS_00073716-exon-scaffold_97-1491911889:354744..354842Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:353518..353654TCONS_00073716-exon-scaffold_97-1491911889:353518..353654Clytia hemisphaericaexon
TCONS_00073716-exon-scaffold_97-1491911889:352802..352813TCONS_00073716-exon-scaffold_97-1491911889:352802..352813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:352802..361049 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.5495	53.0088	37.5398	38.5528	11.2663	9.02252	19.1697	21.2832	14.8061	15.7589	13.626	12.5251	9.29354	9.57381	11.8703	13.7431	15.3273	17.209	6.57101	8.95975	10.2869	9.43452	34.7074	30.0701	13.4746	15.2566	10.4794	6.9077	23.535	25.3765
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011583Chitinase_II
IPR001223Glyco_hydro18_cat
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0008061 chitin binding
Blast
[Close]
BLAST of TCONS_00073716 vs. Swiss-Prot (Human)
Match: CHID1 (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.283e-64
Identity = 109/272 (40.07%), Postives = 161/272 (59.19%), Query Frame = 1 
Query:  355 NNLVSKNIKYQDILKYNKAYFD-DVYERKFMGDVLGYVTPWNNHGYDVAKTF-PKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVRNKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDGIVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLA-ARDTPGMFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEKTLFRQKLLLGLNFYGYTYKGR--SQTPIVG 1155
              LV  ++K + ++  +++Y      +R F GDVLGYVTPWN+HGYDV K F  KFT ISPVWLQ+ +    ++++ G HD+D+ W+R VR       IVPR+L + W+ + F ++      + +   T+V     ++ DG V+E+W+QL    +     ++  L EA+   +   +LVIPP +    D  GMF   +FE LAP++DGFSLMTYDY     PG  AP  W++ CV+ L P K+ +R K+LLGLNFYG  Y     ++ P+VG
Sbjct:   48 RGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDP-KSKWRSKILLGLNFYGMDYATSKDAREPVVG 318
The following BLAST results are available for this feature:
BLAST of TCONS_00073716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHID11.283e-6440.07Chitinase domain-containing protein 1 OS=Homo sapi... [more]
back to top