TCONS_00073716-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073716-protein
Unique NameTCONS_00073716-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073716-protein ID=TCONS_00073716-protein|Name=TCONS_00073716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MDLKWNFLTILLLEIIFLLHHGWKADATLSKSKKKKDTCKSNDCKEKMQK
VVGPITSSVFTNNLVSKNIKYQDILKYNKAYFDDVYERKFMGDVLGYVTP
WNNHGYDVAKTFPKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVR
NKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDG
IVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLAARDTPG
MFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEK
TLFRQKLLLGLNFYGYTYKGRSQTPIVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045772XLOC_045772Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073716TCONS_00073716Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011583Chitinase_II
IPR001223Glyco_hydro18_cat
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0008061 chitin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011583Chitinase IISMARTSM006362g34coord: 92..327
e-value: 0.0093
score: -59.4
NoneNo IPR availableGENE3D3.20.20.80coord: 80..326
e-value: 1.1E-43
score: 149.5
IPR001223Glycoside hydrolase family 18, catalytic domainPFAMPF00704Glyco_hydro_18coord: 94..323
e-value: 9.3E-15
score: 55.0
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 94..314

Blast
[Close]
BLAST of TCONS_00073716-protein vs. Swiss-Prot (Human)
Match: CHID1 (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.178e-69
Identity = 121/307 (39.41%), Postives = 175/307 (57.00%), Query Frame = 0 
Query:   27 ATLSKSKKKKDTCKSNDCKEKMQKVVGPITSSVFTNNLVSKNIKYQDILKYNKAYFD-DVYERKFMGDVLGYVTPWNNHGYDVAKTF-PKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVRNKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDGIVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLA-ARDTPGMFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEKTLFRQKLLLGLNFYG--YTYKGRSQTPIVG 328
             TLSKS  KK   K+    EK Q    P+        LV  ++K + ++  +++Y      +R F GDVLGYVTPWN+HGYDV K F  KFT ISPVWLQ+ +    ++++ G HD+D+ W+R VR       IVPR+L + W+ + F ++      + +   T+V     ++ DG V+E+W+QL    +     ++  L EA+   +   +LVIPP +    D  GMF   +FE LAP++DGFSLMTYDY     PG  AP  W++ CV+ L P K+ +R K+LLGLNFYG  Y     ++ P+VG
Sbjct:   19 TTLSKSDAKKAASKT--LLEKSQFSDKPVQD----RGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDP-KSKWRSKILLGLNFYGMDYATSKDAREPVVG 318
The following BLAST results are available for this feature:
BLAST of TCONS_00073716-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHID14.178e-6939.41Chitinase domain-containing protein 1 OS=Homo sapi... [more]
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