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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00073716-protein ID=TCONS_00073716-protein|Name=TCONS_00073716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MDLKWNFLTILLLEIIFLLHHGWKADATLSKSKKKKDTCKSNDCKEKMQK
VVGPITSSVFTNNLVSKNIKYQDILKYNKAYFDDVYERKFMGDVLGYVTP
WNNHGYDVAKTFPKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVR
NKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDG
IVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLAARDTPG
MFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEK
TLFRQKLLLGLNFYGYTYKGRSQTPIVG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0008061 |
chitin binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011583 | Chitinase II | SMART | SM00636 | 2g34 | coord: 92..327
e-value: 0.0093
score: -59.4 |
| None | No IPR available | GENE3D | 3.20.20.80 | | coord: 80..326
e-value: 1.1E-43
score: 149.5 |
| IPR001223 | Glycoside hydrolase family 18, catalytic domain | PFAM | PF00704 | Glyco_hydro_18 | coord: 94..323
e-value: 9.3E-15
score: 55.0 |
| IPR017853 | Glycoside hydrolase superfamily | SUPERFAMILY | 51445 | (Trans)glycosidases | coord: 94..314 |
Blast
BLAST of TCONS_00073716-protein vs. Swiss-Prot (Human)
Match: CHID1 (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 4.178e-69 Identity = 121/307 (39.41%), Postives = 175/307 (57.00%), Query Frame = 0 Query: 27 ATLSKSKKKKDTCKSNDCKEKMQKVVGPITSSVFTNNLVSKNIKYQDILKYNKAYFD-DVYERKFMGDVLGYVTPWNNHGYDVAKTF-PKFTLISPVWLQILQPQLGVYKIKGTHDIDEKWIRDVRNKNHLAKIVPRMLLDGWSLEGFVSLFSQSQYMYKFVDTIVNFVDERNLDGIVLEIWSQLGGNYKSEASQLIKELGEAMMSRKQKLILVIPPPLA-ARDTPGMFDRNDFELLAPIVDGFSLMTYDYPHYGSPGAVAPYDWIKDCVENLVPEKTLFRQKLLLGLNFYG--YTYKGRSQTPIVG 328
TLSKS KK K+ EK Q P+ LV ++K + ++ +++Y +R F GDVLGYVTPWN+HGYDV K F KFT ISPVWLQ+ + ++++ G HD+D+ W+R VR IVPR+L + W+ + F ++ + + T+V ++ DG V+E+W+QL + ++ L EA+ + +LVIPP + D GMF +FE LAP++DGFSLMTYDY PG AP W++ CV+ L P K+ +R K+LLGLNFYG Y ++ P+VG
Sbjct: 19 TTLSKSDAKKAASKT--LLEKSQFSDKPVQD----RGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDP-KSKWRSKILLGLNFYGMDYATSKDAREPVVG 318
The following BLAST results are available for this feature:
BLAST of TCONS_00073716-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| CHID1 | 4.178e-69 | 39.41 | Chitinase domain-containing protein 1 OS=Homo sapi... | [more] |
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